BQ623302

Overview
NameBQ623302
Unique NameBQ623302
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length459
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623302 vs. ExPASy Swiss-Prot
Match: SODE_MOUSE (Extracellular superoxide dismutase [Cu-Zn] OS=Mus musculus GN=Sod3 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 9.855e-14
Identity = 38/69 (55.07%), Postives = 44/69 (63.77%), Query Frame = 2
Query:   95 GDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKGGHELSLTTGNAGGRLACGVVG 301
            GD GN V   NG      V    SL GP+ ++GR+ VVH  EDDLGKGG++ SL  GNAG RLAC VVG
Sbjct:  158 GDFGNFVVR-NGQLWRHRVGLTASLAGPHAILGRSVVVHAGEDDLGKGGNQASLQNGNAGRRLACCVVG 225          

HSP 2 Score: 28.4906 bits (62), Expect = 9.855e-14
Identity = 10/20 (50.00%), Postives = 13/20 (65.00%), Query Frame = 1
Query:    1 DTTNGCISTGAHFNPNNMTH 60
            D + GC STG H+NP  + H
Sbjct:  134 DLSQGCDSTGPHYNPMEVPH 153          
BLAST of BQ623302 vs. ExPASy Swiss-Prot
Match: SODE_RAT (Extracellular superoxide dismutase [Cu-Zn] OS=Rattus norvegicus GN=Sod3 PE=1 SV=2)

HSP 1 Score: 65.4698 bits (158), Expect = 1.039e-12
Identity = 36/69 (52.17%), Postives = 45/69 (65.22%), Query Frame = 2
Query:   95 GDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKGGHELSLTTGNAGGRLACGVVG 301
            GD GN V   +G      +    SL GP++++GRA VVH  EDDLGKGG++ S+  GNAG RLAC VVG
Sbjct:  151 GDFGNFVVR-DGRLWKHRMGLATSLAGPHSILGRAVVVHAGEDDLGKGGNQASVQNGNAGRRLACCVVG 218          

HSP 2 Score: 28.1054 bits (61), Expect = 1.039e-12
Identity = 10/20 (50.00%), Postives = 13/20 (65.00%), Query Frame = 1
Query:    1 DTTNGCISTGAHFNPNNMTH 60
            D + GC STG H+NP  + H
Sbjct:  127 DLSQGCESTGPHYNPLGVPH 146          
BLAST of BQ623302 vs. ExPASy Swiss-Prot
Match: SODE_RABIT (Extracellular superoxide dismutase [Cu-Zn] OS=Oryctolagus cuniculus GN=SOD3 PE=2 SV=2)

HSP 1 Score: 62.3882 bits (150), Expect = 3.837e-12
Identity = 30/46 (65.22%), Postives = 36/46 (78.26%), Query Frame = 2
Query:  164 SLDGPNTVVGRAFVVHELEDDLGKGGHELSLTTGNAGGRLACGVVG 301
            SL GP+++VGRA VVH  EDDLG+GG+  S+  GNAG RLAC VVG
Sbjct:  170 SLAGPHSIVGRAVVVHAGEDDLGRGGNAASVENGNAGPRLACCVVG 215          

HSP 2 Score: 29.261 bits (64), Expect = 3.837e-12
Identity = 11/20 (55.00%), Postives = 14/20 (70.00%), Query Frame = 1
Query:    1 DTTNGCISTGAHFNPNNMTH 60
            D + GC STGAH+NP  + H
Sbjct:  124 DLSQGCDSTGAHYNPLAVQH 143          
BLAST of BQ623302 vs. ExPASy Swiss-Prot
Match: SODE_HUMAN (Extracellular superoxide dismutase [Cu-Zn] OS=Homo sapiens GN=SOD3 PE=1 SV=2)

HSP 1 Score: 64.3142 bits (155), Expect = 3.841e-12
Identity = 35/70 (50.00%), Postives = 44/70 (62.86%), Query Frame = 2
Query:   95 GDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKGGHELSLTTGNAGGRLACGVVGL 304
            GD GN     +G           SL GP+++VGRA VVH  EDDLG+GG++ S+  GNAG RLAC VVG+
Sbjct:  144 GDFGNFAVR-DGSLWRYRAGLAASLAGPHSIVGRAVVVHAGEDDLGRGGNQASVENGNAGRRLACCVVGV 212          

HSP 2 Score: 27.335 bits (59), Expect = 3.841e-12
Identity = 10/20 (50.00%), Postives = 13/20 (65.00%), Query Frame = 1
Query:    1 DTTNGCISTGAHFNPNNMTH 60
            D + GC STG H+NP  + H
Sbjct:  120 DLSQGCESTGPHYNPLAVPH 139          
BLAST of BQ623302 vs. ExPASy Swiss-Prot
Match: SODC_LAMCR (Superoxide dismutase [Cu-Zn] (Fragment) OS=Lampanyctus crocodilus GN=sod1 PE=1 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 5.009e-12
Identity = 34/64 (53.12%), Postives = 45/64 (70.31%), Query Frame = 2
Query:   95 GDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKGGHELSLTTGNAGGRLA 286
            GDLGN       VA+  I D  ++L+GP +++GR  V+HE  DDLGKGG++ SL TGNAGGR+A
Sbjct:   83 GDLGN-------VAKIDITDKMLTLNGPLSIIGRTMVIHEKADDLGKGGNDESLKTGNAGGRMA 139          
The following BLAST results are available for this feature:
BLAST of BQ623302 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 135
Match NameE-valueIdentityDescription
SODE_MOUSE9.855e-1455.07Extracellular superoxide dismutase [Cu-Zn] OS=Mus ... [more]
SODE_RAT1.039e-1252.17Extracellular superoxide dismutase [Cu-Zn] OS=Ratt... [more]
SODE_RABIT3.837e-1265.22Extracellular superoxide dismutase [Cu-Zn] OS=Oryc... [more]
SODE_HUMAN3.841e-1250.00Extracellular superoxide dismutase [Cu-Zn] OS=Homo... [more]
SODC_LAMCR5.009e-1253.13Superoxide dismutase [Cu-Zn] (Fragment) OS=Lampany... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00393 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00393 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623302 ID=BQ623302; Name=BQ623302; organism=Citrus sinensis; type=EST; length=459bp
GATACGACAAATGGGTGTATATCAACAGGAGCACATTTCAATCCTAATAA
CATGACACACCGGTGCCTCCTAAAGATGAAGTGCGACATCGCGTGGTGAC
CTGGGAAACATAGTTGCTAACGCCAATGGTGTGGCAGAAGCAACAATTGT
GGACAACCAGATATCACTGGATGGTCCAAACACAGTAGTTGGAAGAGCCT
TTGTGGTTCATGAGCTTGAGGATGACCTTGGAAAAGGTGGGCATGAACTT
AGTCTAACCACTGGCAATGCAGGTGGAAGACTGGCATGCGGTGTCGTTGG
CTTGACTCCGGTATGAGATCAGCAAAACCAGTGTGGTTGCACTATTTGCT
GCATGCTTTTTCCAGATTATCAATCGGAGCCAAGTACAATGTTGAAAGTG
AGAGCGTGTAACATAAATTTGTGCAGACAGCTGGTATTAATAAAATAATG
CTTGCGGGC
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