BQ623302

Overview
NameBQ623302
Unique NameBQ623302
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length459
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623302 vs. ExPASy Swiss-Prot
Match: SODC2_ORYSJ (Superoxide dismutase [Cu-Zn] 2 OS=Oryza sativa subsp. japonica GN=SODCC2 PE=1 SV=2)

HSP 1 Score: 100.138 bits (248), Expect = 1.041e-25
Identity = 46/70 (65.71%), Postives = 56/70 (80.00%), Query Frame = 2
Query:   95 GDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKGGHELSLTTGNAGGRLACGVVGL 304
            GDLGNI A A+GVA   + D+QI L G ++++GRA VVH   DDLGKGGHELS TTGNAGGR+ACG++GL
Sbjct:   81 GDLGNITAGADGVANVNVSDSQIPLTGAHSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGL 150          

HSP 2 Score: 37.3502 bits (85), Expect = 1.041e-25
Identity = 14/20 (70.00%), Postives = 15/20 (75.00%), Query Frame = 1
Query:    1 DTTNGCISTGAHFNPNNMTH 60
            DTTNGC+STG HFNP    H
Sbjct:   51 DTTNGCMSTGPHFNPTGKEH 70          
BLAST of BQ623302 vs. ExPASy Swiss-Prot
Match: SODC1_MESCR (Superoxide dismutase [Cu-Zn] 1 OS=Mesembryanthemum crystallinum GN=SODCC.1 PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.354e-25
Identity = 47/70 (67.14%), Postives = 55/70 (78.57%), Query Frame = 2
Query:   95 GDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKGGHELSLTTGNAGGRLACGVVGL 304
            GDLGNI    +G A  TI+D+QI L GPN++VGRA VVH   DDLG+GGHELS  TGNAGGR+ACGV+GL
Sbjct:   81 GDLGNITVGDDGTATFTIIDSQIPLTGPNSIVGRAVVVHADPDDLGRGGHELSKATGNAGGRVACGVIGL 150          

HSP 2 Score: 36.5798 bits (83), Expect = 1.354e-25
Identity = 14/20 (70.00%), Postives = 15/20 (75.00%), Query Frame = 1
Query:    1 DTTNGCISTGAHFNPNNMTH 60
            DTTNGC+STG HFNP    H
Sbjct:   51 DTTNGCMSTGPHFNPAGKEH 70          
BLAST of BQ623302 vs. ExPASy Swiss-Prot
Match: SODC_PEA (Superoxide dismutase [Cu-Zn] OS=Pisum sativum GN=SODCC PE=2 SV=2)

HSP 1 Score: 96.2857 bits (238), Expect = 1.354e-25
Identity = 45/70 (64.29%), Postives = 52/70 (74.29%), Query Frame = 2
Query:   95 GDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKGGHELSLTTGNAGGRLACGVVGL 304
            GDLGNI    +G    TI DN I L G N+++GRA VVH   DDLGKGGHELS TTGNAGGR+ACG++GL
Sbjct:   81 GDLGNINVGDDGTVSFTITDNHIPLTGTNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGL 150          

HSP 2 Score: 40.817 bits (94), Expect = 1.354e-25
Identity = 16/20 (80.00%), Postives = 16/20 (80.00%), Query Frame = 1
Query:    1 DTTNGCISTGAHFNPNNMTH 60
            DTTNGCISTG HFNPN   H
Sbjct:   51 DTTNGCISTGPHFNPNGKEH 70          
BLAST of BQ623302 vs. ExPASy Swiss-Prot
Match: SODC_PINSY (Superoxide dismutase [Cu-Zn] OS=Pinus sylvestris GN=SODCC PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.761e-25
Identity = 47/70 (67.14%), Postives = 55/70 (78.57%), Query Frame = 2
Query:   95 GDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKGGHELSLTTGNAGGRLACGVVGL 304
            GDLGN+    +G  E +I D+QI L GP+++VGRA VVH   DDLGKGGHELS +TGNAGGRLACGVVGL
Sbjct:   83 GDLGNVTVGTDGTVEFSITDSQIPLSGPHSIVGRAVVVHADPDDLGKGGHELSKSTGNAGGRLACGVVGL 152          

HSP 2 Score: 36.1946 bits (82), Expect = 1.761e-25
Identity = 14/20 (70.00%), Postives = 15/20 (75.00%), Query Frame = 1
Query:    1 DTTNGCISTGAHFNPNNMTH 60
            DTTNGC+STG HFNP    H
Sbjct:   53 DTTNGCMSTGPHFNPLGKEH 72          
BLAST of BQ623302 vs. ExPASy Swiss-Prot
Match: SODC_DANRE (Superoxide dismutase [Cu-Zn] OS=Danio rerio GN=sod1 PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 2.293e-25
Identity = 44/71 (61.97%), Postives = 58/71 (81.69%), Query Frame = 2
Query:   95 GDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKGGHELSLTTGNAGGRLACGVVGLT 307
            GDLGN+ A+A+GVA+  I D  ++L G ++++GR  V+HE EDDLGKGG+E SL TGNAGGRLACGV+G+T
Sbjct:   83 GDLGNVTADASGVAKIEIEDAMLTLSGQHSIIGRTMVIHEKEDDLGKGGNEESLKTGNAGGRLACGVIGIT 153          

HSP 2 Score: 37.7354 bits (86), Expect = 2.293e-25
Identity = 14/20 (70.00%), Postives = 16/20 (80.00%), Query Frame = 1
Query:    1 DTTNGCISTGAHFNPNNMTH 60
            D TNGCIS G HFNP++ TH
Sbjct:   53 DNTNGCISAGPHFNPHDKTH 72          
BLAST of BQ623302 vs. ExPASy Swiss-Prot
Match: SODC_ZANAE (Superoxide dismutase [Cu-Zn] OS=Zantedeschia aethiopica GN=SODCC PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 3.888e-25
Identity = 47/70 (67.14%), Postives = 53/70 (75.71%), Query Frame = 2
Query:   95 GDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKGGHELSLTTGNAGGRLACGVVGL 304
            GDLGN+    +G    T+ D+QI L G N+VVGRA VVH   DDLGKGGHELS TTGNAGGRLACGV+GL
Sbjct:   81 GDLGNVTVGEDGTVNFTVTDSQIPLTGLNSVVGRAVVVHADSDDLGKGGHELSKTTGNAGGRLACGVIGL 150          

HSP 2 Score: 36.5798 bits (83), Expect = 3.888e-25
Identity = 14/20 (70.00%), Postives = 15/20 (75.00%), Query Frame = 1
Query:    1 DTTNGCISTGAHFNPNNMTH 60
            DTTNGC+STG HFNP    H
Sbjct:   51 DTTNGCMSTGPHFNPAGKEH 70          
BLAST of BQ623302 vs. ExPASy Swiss-Prot
Match: SODC_CARPA (Superoxide dismutase [Cu-Zn] OS=Carica papaya GN=SODCC PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 5.060e-25
Identity = 46/70 (65.71%), Postives = 55/70 (78.57%), Query Frame = 2
Query:   95 GDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKGGHELSLTTGNAGGRLACGVVGL 304
            GDLGN+    +G    +I+D+QI L GPN++VGRA VVH   DDLGKGGHELS TTGNAGGR+ACGV+GL
Sbjct:   81 GDLGNVNVGDDGKVSFSIIDSQIPLTGPNSIVGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGVIGL 150          

HSP 2 Score: 36.5798 bits (83), Expect = 5.060e-25
Identity = 14/20 (70.00%), Postives = 15/20 (75.00%), Query Frame = 1
Query:    1 DTTNGCISTGAHFNPNNMTH 60
            DTTNGC+STG HFNP    H
Sbjct:   51 DTTNGCMSTGPHFNPAGKEH 70          
BLAST of BQ623302 vs. ExPASy Swiss-Prot
Match: SODC_PANGI (Superoxide dismutase [Cu-Zn] OS=Panax ginseng GN=SODCC PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 5.060e-25
Identity = 46/70 (65.71%), Postives = 53/70 (75.71%), Query Frame = 2
Query:   95 GDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKGGHELSLTTGNAGGRLACGVVGL 304
            GDLGN+    +G AE TIVD QI L G  +++GRA VVH   DDLGKGGHELS +TGNAGGRLACG +GL
Sbjct:   81 GDLGNVTVGEDGTAEFTIVDKQIPLIGSGSIIGRAVVVHADPDDLGKGGHELSKSTGNAGGRLACGFIGL 150          

HSP 2 Score: 38.1206 bits (87), Expect = 5.060e-25
Identity = 14/20 (70.00%), Postives = 16/20 (80.00%), Query Frame = 1
Query:    1 DTTNGCISTGAHFNPNNMTH 60
            DTTNGC+STG H+NP N  H
Sbjct:   51 DTTNGCLSTGPHYNPANKEH 70          
BLAST of BQ623302 vs. ExPASy Swiss-Prot
Match: SODCP_POPTM (Superoxide dismutase [Cu-Zn], chloroplastic OS=Populus tremuloides GN=SODCP PE=2 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 5.160e-25
Identity = 70/106 (66.04%), Postives = 74/106 (69.81%), Query Frame = 2
Query:    2 IRQMGVYQQEHISILIT*HTGAS*R*SATSRGDLGNIVANANGVAEATIVDNQISLDG--PNTVVGRAFVVHELEDDLGKGGHELSLTTGNAGGRLACGVVGLTPV 313
            I QMGV QQ+HI I     T  S        GDLGNIVANA GVAE      QI      PN+VVGRA VVHEL+DDLGKGGHELSL+TGNAGGRLACGVVGLTPV
Sbjct:   99 IPQMGVSQQDHILIQQV-DTWCS-EDEIRHAGDLGNIVANAEGVAECR-QSWQIRYHSLRPNSVVGRALVVHELQDDLGKGGHELSLSTGNAGGRLACGVVGLTPV 201          
BLAST of BQ623302 vs. ExPASy Swiss-Prot
Match: SODC2_BRAJU (Superoxide dismutase [Cu-Zn] 2 OS=Brassica juncea GN=SODCC2 PE=2 SV=3)

HSP 1 Score: 100.908 bits (250), Expect = 6.586e-25
Identity = 48/70 (68.57%), Postives = 55/70 (78.57%), Query Frame = 2
Query:   95 GDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKGGHELSLTTGNAGGRLACGVVGL 304
            GDLGNI+   +G A  TI D QI L GPN++VGRA VVH   D LGKGGHELSLTTGNAGGR+ACG++GL
Sbjct:   81 GDLGNIIVGDDGTATFTITDCQIPLSGPNSIVGRAVVVHADPDVLGKGGHELSLTTGNAGGRVACGIIGL 150          

HSP 2 Score: 33.8834 bits (76), Expect = 6.586e-25
Identity = 13/20 (65.00%), Postives = 15/20 (75.00%), Query Frame = 1
Query:    1 DTTNGCISTGAHFNPNNMTH 60
            DTTNG +STG HFNP+   H
Sbjct:   51 DTTNGSMSTGPHFNPDGKQH 70          
The following BLAST results are available for this feature:
BLAST of BQ623302 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 135
Match NameE-valueIdentityDescription
SODC2_ORYSJ1.041e-2565.71Superoxide dismutase [Cu-Zn] 2 OS=Oryza sativa sub... [more]
SODC1_MESCR1.354e-2567.14Superoxide dismutase [Cu-Zn] 1 OS=Mesembryanthemum... [more]
SODC_PEA1.354e-2564.29Superoxide dismutase [Cu-Zn] OS=Pisum sativum GN=S... [more]
SODC_PINSY1.761e-2567.14Superoxide dismutase [Cu-Zn] OS=Pinus sylvestris G... [more]
SODC_DANRE2.293e-2561.97Superoxide dismutase [Cu-Zn] OS=Danio rerio GN=sod... [more]
SODC_ZANAE3.888e-2567.14Superoxide dismutase [Cu-Zn] OS=Zantedeschia aethi... [more]
SODC_CARPA5.060e-2565.71Superoxide dismutase [Cu-Zn] OS=Carica papaya GN=S... [more]
SODC_PANGI5.060e-2565.71Superoxide dismutase [Cu-Zn] OS=Panax ginseng GN=S... [more]
SODCP_POPTM5.160e-2566.04Superoxide dismutase [Cu-Zn], chloroplastic OS=Pop... [more]
SODC2_BRAJU6.586e-2568.57Superoxide dismutase [Cu-Zn] 2 OS=Brassica juncea ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00393 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00393 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623302 ID=BQ623302; Name=BQ623302; organism=Citrus sinensis; type=EST; length=459bp
GATACGACAAATGGGTGTATATCAACAGGAGCACATTTCAATCCTAATAA
CATGACACACCGGTGCCTCCTAAAGATGAAGTGCGACATCGCGTGGTGAC
CTGGGAAACATAGTTGCTAACGCCAATGGTGTGGCAGAAGCAACAATTGT
GGACAACCAGATATCACTGGATGGTCCAAACACAGTAGTTGGAAGAGCCT
TTGTGGTTCATGAGCTTGAGGATGACCTTGGAAAAGGTGGGCATGAACTT
AGTCTAACCACTGGCAATGCAGGTGGAAGACTGGCATGCGGTGTCGTTGG
CTTGACTCCGGTATGAGATCAGCAAAACCAGTGTGGTTGCACTATTTGCT
GCATGCTTTTTCCAGATTATCAATCGGAGCCAAGTACAATGTTGAAAGTG
AGAGCGTGTAACATAAATTTGTGCAGACAGCTGGTATTAATAAAATAATG
CTTGCGGGC
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