BQ623302

Overview
NameBQ623302
Unique NameBQ623302
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length459
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623302 vs. ExPASy Swiss-Prot
Match: SODC_YARLI (Superoxide dismutase [Cu-Zn] OS=Yarrowia lipolytica GN=SOD1 PE=3 SV=3)

HSP 1 Score: 87.8113 bits (216), Expect = 1.897e-20
Identity = 41/71 (57.75%), Postives = 52/71 (73.24%), Query Frame = 2
Query:   95 GDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKGGHELSLTTGNAGGRLACGVVGLT 307
            GDLGN+  ++ GVA+  + D+ + L G N++VGR  V+H  EDDLGKGGH  SL TGNAG R ACGV+GLT
Sbjct:   83 GDLGNVKTDSEGVAKGVLKDSLLKLTGDNSIVGRTVVIHGGEDDLGKGGHADSLKTGNAGPRPACGVIGLT 153          

HSP 2 Score: 31.9574 bits (71), Expect = 1.897e-20
Identity = 12/20 (60.00%), Postives = 12/20 (60.00%), Query Frame = 1
Query:    1 DTTNGCISTGAHFNPNNMTH 60
            D TNGC S G HFNP    H
Sbjct:   53 DNTNGCTSAGPHFNPFKKNH 72          
BLAST of BQ623302 vs. ExPASy Swiss-Prot
Match: SODC_PODAN (Superoxide dismutase [Cu-Zn] OS=Podospora anserina GN=SOD1 PE=3 SV=3)

HSP 1 Score: 84.3445 bits (207), Expect = 1.897e-20
Identity = 41/71 (57.75%), Postives = 50/71 (70.42%), Query Frame = 2
Query:   95 GDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKGGHELSLTTGNAGGRLACGVVGLT 307
            GDLGNI  +A G ++ T+ DN I L GP +V+GR  VVH   DDLGKG  E SL TGNAG R ACGV+G++
Sbjct:   83 GDLGNIETDAQGNSKGTVTDNLIKLIGPESVIGRTVVVHAGTDDLGKGDTEESLKTGNAGARPACGVIGIS 153          

HSP 2 Score: 35.4242 bits (80), Expect = 1.897e-20
Identity = 13/20 (65.00%), Postives = 14/20 (70.00%), Query Frame = 1
Query:    1 DTTNGCISTGAHFNPNNMTH 60
            D TNGC S G HFNP+  TH
Sbjct:   53 DNTNGCTSAGPHFNPHGKTH 72          
BLAST of BQ623302 vs. ExPASy Swiss-Prot
Match: SODC_PONPY (Superoxide dismutase [Cu-Zn] OS=Pongo pygmaeus GN=SOD1 PE=2 SV=3)

HSP 1 Score: 90.8929 bits (224), Expect = 2.468e-20
Identity = 42/70 (60.00%), Postives = 53/70 (75.71%), Query Frame = 2
Query:   95 GDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKGGHELSLTTGNAGGRLACGVVGL 304
            GDLGN+ A+ +GVA  +I D+ ISL G + ++GR  VVHE  DDLGKGG+E S  TGNAG RLACGV+G+
Sbjct:   84 GDLGNVTADKDGVASVSIEDSVISLSGDHCIIGRTLVVHEKADDLGKGGNEESTKTGNAGSRLACGVIGI 153          

HSP 2 Score: 28.4906 bits (62), Expect = 2.468e-20
Identity = 11/20 (55.00%), Postives = 12/20 (60.00%), Query Frame = 1
Query:    1 DTTNGCISTGAHFNPNNMTH 60
            D T GC S G HFNP +  H
Sbjct:   54 DNTVGCTSAGPHFNPLSRKH 73          
BLAST of BQ623302 vs. ExPASy Swiss-Prot
Match: SODC_ASHGO (Superoxide dismutase [Cu-Zn] OS=Ashbya gossypii GN=SOD1 PE=3 SV=3)

HSP 1 Score: 84.3445 bits (207), Expect = 2.468e-20
Identity = 39/70 (55.71%), Postives = 53/70 (75.71%), Query Frame = 2
Query:   95 GDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKGGHELSLTTGNAGGRLACGVVGL 304
            GD+GN++A+ANGVA  +  D  I + GP +++GR  VVH  +DDLG+GG+E SL TGNAG R ACGV+G+
Sbjct:   83 GDMGNVLADANGVAVGSAKDPLIKIFGPTSILGRTVVVHAGKDDLGRGGNEESLKTGNAGPRPACGVIGI 152          

HSP 2 Score: 35.039 bits (79), Expect = 2.468e-20
Identity = 13/20 (65.00%), Postives = 15/20 (75.00%), Query Frame = 1
Query:    1 DTTNGCISTGAHFNPNNMTH 60
            D TNGC S+G+HFNP   TH
Sbjct:   53 DVTNGCTSSGSHFNPFKKTH 72          
BLAST of BQ623302 vs. ExPASy Swiss-Prot
Match: SODC_DROER (Superoxide dismutase [Cu-Zn] OS=Drosophila erecta GN=Sod PE=3 SV=3)

HSP 1 Score: 85.1149 bits (209), Expect = 2.471e-20
Identity = 39/73 (53.42%), Postives = 53/73 (72.60%), Query Frame = 2
Query:   95 GDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKGGHELSLTTGNAGGRLACGVVGLTPV 313
            GDLGNI A  +   + +I D++I+L G ++++GR  VVH   DDLGKGGHELS +TGNAG R+ CGV+G+  V
Sbjct:   81 GDLGNIEATGDCPTKVSITDSKITLFGADSIIGRTVVVHADADDLGKGGHELSKSTGNAGARIGCGVIGIAKV 153          

HSP 2 Score: 34.2686 bits (77), Expect = 2.471e-20
Identity = 12/20 (60.00%), Postives = 15/20 (75.00%), Query Frame = 1
Query:    1 DTTNGCISTGAHFNPNNMTH 60
            D TNGC+S+G HFNP+   H
Sbjct:   51 DNTNGCMSSGPHFNPHGKEH 70          
BLAST of BQ623302 vs. ExPASy Swiss-Prot
Match: SODC_CAPHI (Superoxide dismutase [Cu-Zn] OS=Capra hircus GN=SOD1 PE=2 SV=3)

HSP 1 Score: 89.3521 bits (220), Expect = 3.214e-20
Identity = 43/72 (59.72%), Postives = 52/72 (72.22%), Query Frame = 2
Query:   95 GDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKGGHELSLTTGNAGGRLACGVVGLTP 310
            GDLGN+ A+ NGVA   IVD  ISL G  +++GR  VVHE  DDLG+GG+E S  TGNAG  LACGV+G+ P
Sbjct:   81 GDLGNVKADKNGVAIVDIVDPLISLSGEYSIIGRTMVVHEKPDDLGRGGNEESTKTGNAGSCLACGVIGIAP 152          

HSP 2 Score: 29.6462 bits (65), Expect = 3.214e-20
Identity = 11/20 (55.00%), Postives = 12/20 (60.00%), Query Frame = 1
Query:    1 DTTNGCISTGAHFNPNNMTH 60
            D T GC S G HFNP +  H
Sbjct:   51 DNTQGCTSAGPHFNPLSKKH 70          
BLAST of BQ623302 vs. ExPASy Swiss-Prot
Match: SODC_CRYGA (Superoxide dismutase [Cu-Zn] OS=Cryptococcus gattii GN=SOD1 PE=2 SV=3)

HSP 1 Score: 85.1149 bits (209), Expect = 4.176e-20
Identity = 39/71 (54.93%), Postives = 49/71 (69.01%), Query Frame = 2
Query:   95 GDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKGGHELSLTTGNAGGRLACGVVGLT 307
            GDLGN+  + NGVA   I D  +SL GP +++GR  VVH   DD GKGG+  SL TGNAG R ACGV+G++
Sbjct:   83 GDLGNVKTDGNGVASVNISDKSLSLFGPYSIIGRTIVVHAGTDDFGKGGNAESLKTGNAGARAACGVIGIS 153          

HSP 2 Score: 33.4982 bits (75), Expect = 4.176e-20
Identity = 12/20 (60.00%), Postives = 13/20 (65.00%), Query Frame = 1
Query:    1 DTTNGCISTGAHFNPNNMTH 60
            D TNGC S G HFNP+   H
Sbjct:   53 DNTNGCTSAGPHFNPHGKNH 72          
BLAST of BQ623302 vs. ExPASy Swiss-Prot
Match: SODC1_DICDI (Superoxide dismutase [Cu-Zn] 1 OS=Dictyostelium discoideum GN=sodA PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 4.181e-20
Identity = 42/71 (59.15%), Postives = 50/71 (70.42%), Query Frame = 2
Query:   95 GDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKGGHELSLTTGNAGGRLACGVVGLT 307
            GDLGNIVA+     + TI D  ISL G +T+VGR  VVH  +DDLGKGG   SLTTG AG RL CGV+G++
Sbjct:   82 GDLGNIVADGESNTKGTISDKIISLFGEHTIVGRTMVVHADQDDLGKGGKPDSLTTGAAGARLGCGVIGVS 152          

HSP 2 Score: 35.4242 bits (80), Expect = 4.181e-20
Identity = 13/20 (65.00%), Postives = 14/20 (70.00%), Query Frame = 1
Query:    1 DTTNGCISTGAHFNPNNMTH 60
            DTTNGC+S G HFNP    H
Sbjct:   52 DTTNGCVSAGPHFNPFGKNH 71          
BLAST of BQ623302 vs. ExPASy Swiss-Prot
Match: SODC_CORMI (Superoxide dismutase [Cu-Zn] OS=Cordyceps militaris GN=SOD1 PE=2 SV=3)

HSP 1 Score: 82.8037 bits (203), Expect = 5.432e-20
Identity = 40/70 (57.14%), Postives = 51/70 (72.86%), Query Frame = 2
Query:   95 GDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKGGHELSLTTGNAGGRLACGVVGL 304
            GDLGNI  +  G A+ ++ D+ + L GP++VVGR  VVH   DDLGKGG+E SL TGNAG R ACGV+G+
Sbjct:   83 GDLGNIKTDGQGNAKGSVQDSHVKLIGPHSVVGRTVVVHGGTDDLGKGGNEESLKTGNAGPRPACGVIGV 152          

HSP 2 Score: 35.4242 bits (80), Expect = 5.432e-20
Identity = 13/20 (65.00%), Postives = 14/20 (70.00%), Query Frame = 1
Query:    1 DTTNGCISTGAHFNPNNMTH 60
            D TNGC S G HFNP+  TH
Sbjct:   53 DNTNGCTSAGPHFNPHGKTH 72          
BLAST of BQ623302 vs. ExPASy Swiss-Prot
Match: SODC_DROYA (Superoxide dismutase [Cu-Zn] OS=Drosophila yakuba GN=Sod PE=3 SV=3)

HSP 1 Score: 85.1149 bits (209), Expect = 5.438e-20
Identity = 39/73 (53.42%), Postives = 53/73 (72.60%), Query Frame = 2
Query:   95 GDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKGGHELSLTTGNAGGRLACGVVGLTPV 313
            GDLGNI A  +   + +I D++I+L G ++++GR  VVH   DDLGKGGHELS +TGNAG R+ CGV+G+  V
Sbjct:   81 GDLGNIEATGDCPTKVSITDSKITLFGADSIIGRTVVVHADADDLGKGGHELSKSTGNAGARIGCGVIGIAKV 153          

HSP 2 Score: 33.113 bits (74), Expect = 5.438e-20
Identity = 12/20 (60.00%), Postives = 14/20 (70.00%), Query Frame = 1
Query:    1 DTTNGCISTGAHFNPNNMTH 60
            D TNGC+S+G HFNP    H
Sbjct:   51 DNTNGCMSSGPHFNPYGKEH 70          
The following BLAST results are available for this feature:
BLAST of BQ623302 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 135
Match NameE-valueIdentityDescription
SODC_YARLI1.897e-2057.75Superoxide dismutase [Cu-Zn] OS=Yarrowia lipolytic... [more]
SODC_PODAN1.897e-2057.75Superoxide dismutase [Cu-Zn] OS=Podospora anserina... [more]
SODC_PONPY2.468e-2060.00Superoxide dismutase [Cu-Zn] OS=Pongo pygmaeus GN=... [more]
SODC_ASHGO2.468e-2055.71Superoxide dismutase [Cu-Zn] OS=Ashbya gossypii GN... [more]
SODC_DROER2.471e-2053.42Superoxide dismutase [Cu-Zn] OS=Drosophila erecta ... [more]
SODC_CAPHI3.214e-2059.72Superoxide dismutase [Cu-Zn] OS=Capra hircus GN=SO... [more]
SODC_CRYGA4.176e-2054.93Superoxide dismutase [Cu-Zn] OS=Cryptococcus gatti... [more]
SODC1_DICDI4.181e-2059.15Superoxide dismutase [Cu-Zn] 1 OS=Dictyostelium di... [more]
SODC_CORMI5.432e-2057.14Superoxide dismutase [Cu-Zn] OS=Cordyceps militari... [more]
SODC_DROYA5.438e-2053.42Superoxide dismutase [Cu-Zn] OS=Drosophila yakuba ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00393 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00393 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623302 ID=BQ623302; Name=BQ623302; organism=Citrus sinensis; type=EST; length=459bp
GATACGACAAATGGGTGTATATCAACAGGAGCACATTTCAATCCTAATAA
CATGACACACCGGTGCCTCCTAAAGATGAAGTGCGACATCGCGTGGTGAC
CTGGGAAACATAGTTGCTAACGCCAATGGTGTGGCAGAAGCAACAATTGT
GGACAACCAGATATCACTGGATGGTCCAAACACAGTAGTTGGAAGAGCCT
TTGTGGTTCATGAGCTTGAGGATGACCTTGGAAAAGGTGGGCATGAACTT
AGTCTAACCACTGGCAATGCAGGTGGAAGACTGGCATGCGGTGTCGTTGG
CTTGACTCCGGTATGAGATCAGCAAAACCAGTGTGGTTGCACTATTTGCT
GCATGCTTTTTCCAGATTATCAATCGGAGCCAAGTACAATGTTGAAAGTG
AGAGCGTGTAACATAAATTTGTGCAGACAGCTGGTATTAATAAAATAATG
CTTGCGGGC
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