CB304739

Overview
NameCB304739
Unique NameCB304739
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length586
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13111 contig Csv1_Contig13111:80..665. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304739 vs. ExPASy Swiss-Prot
Match: H2B3_MEDTR (Probable histone H2B.3 OS=Medicago truncatula PE=3 SV=3)

HSP 1 Score: 177.178 bits (448), Expect = 5.343e-44
Identity = 94/109 (86.24%), Postives = 99/109 (90.83%), Query Frame = -1
Query:  179 ISKDGGGVEXXXXXXXKNVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 505
            ISK+G   +       K+VETYKIYIFKVLKQVHPDIG+SSKAMGIMNSFINDIFEKLAQE+SRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   31 ISKEGSS-DKKKKRTKKSVETYKIYIFKVLKQVHPDIGVSSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 138          
BLAST of CB304739 vs. ExPASy Swiss-Prot
Match: H2B1_ARATH (Histone H2B.1 OS=Arabidopsis thaliana GN=At1g07790 PE=1 SV=3)

HSP 1 Score: 177.178 bits (448), Expect = 5.343e-44
Identity = 90/92 (97.83%), Postives = 92/92 (100.00%), Query Frame = -1
Query:  179 NVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 454
            NVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQE+S+LARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   57 NVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 148          
BLAST of CB304739 vs. ExPASy Swiss-Prot
Match: H2B9_ARATH (Histone H2B.9 OS=Arabidopsis thaliana GN=At5g02570 PE=1 SV=3)

HSP 1 Score: 174.866 bits (442), Expect = 2.652e-43
Identity = 93/111 (83.78%), Postives = 97/111 (87.39%), Query Frame = -1
Query:  179 ISKDGGGVEXXXXXXXK--NVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 505
            I+K+GG  E          + ETYKIYIFKVLKQVHPDIGIS KAMGIMNSFINDIFEKLAQE+SRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   22 IAKEGGTSEIVKKKKKTKKSTETYKIYIFKVLKQVHPDIGISGKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 132          
BLAST of CB304739 vs. ExPASy Swiss-Prot
Match: H2B7_ARATH (Histone H2B.7 OS=Arabidopsis thaliana GN=At3g46030 PE=1 SV=3)

HSP 1 Score: 174.481 bits (441), Expect = 3.463e-43
Identity = 91/105 (86.67%), Postives = 95/105 (90.48%), Query Frame = -1
Query:  179 GGGVEXXXXXXXKNVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 493
            G G +       K+VETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLA E+S+LARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   41 GAGGDKKKKMKKKSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLASESSKLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 145          
BLAST of CB304739 vs. ExPASy Swiss-Prot
Match: H2B6_ARATH (Histone H2B.6 OS=Arabidopsis thaliana GN=H2B PE=1 SV=3)

HSP 1 Score: 174.481 bits (441), Expect = 3.463e-43
Identity = 91/105 (86.67%), Postives = 95/105 (90.48%), Query Frame = -1
Query:  179 GGGVEXXXXXXXKNVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 493
            G G +       K+VETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLA E+S+LARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   46 GAGGDKKKKMKKKSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLASESSKLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 150          
BLAST of CB304739 vs. ExPASy Swiss-Prot
Match: H2B1_ORYSJ (Histone H2B.1 OS=Oryza sativa subsp. japonica GN=H2B1 PE=2 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 3.463e-43
Identity = 93/109 (85.32%), Postives = 99/109 (90.83%), Query Frame = -1
Query:  179 SKDGG-GVEXXXXXXXKNVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 502
            SK+GG G +       K+VETYKIYIFKVLKQVHPDIGISSKAM IMNSFINDIFEKLAQEA+RLARYNKKPTITSREIQT+VRLVLPGELAKHAVSEGTKAVTKFTS+
Sbjct:   44 SKEGGAGDKKGRKKAKKSVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAQEAARLARYNKKPTITSREIQTSVRLVLPGELAKHAVSEGTKAVTKFTSN 152          
BLAST of CB304739 vs. ExPASy Swiss-Prot
Match: H2B1_ORYSI (Histone H2B.1 OS=Oryza sativa subsp. indica GN=OsI_010709 PE=3 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 3.463e-43
Identity = 93/109 (85.32%), Postives = 99/109 (90.83%), Query Frame = -1
Query:  179 SKDGG-GVEXXXXXXXKNVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 502
            SK+GG G +       K+VETYKIYIFKVLKQVHPDIGISSKAM IMNSFINDIFEKLAQEA+RLARYNKKPTITSREIQT+VRLVLPGELAKHAVSEGTKAVTKFTS+
Sbjct:   44 SKEGGAGDKKGRKKAKKSVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAQEAARLARYNKKPTITSREIQTSVRLVLPGELAKHAVSEGTKAVTKFTSN 152          
BLAST of CB304739 vs. ExPASy Swiss-Prot
Match: H2B10_ARATH (Histone H2B.10 OS=Arabidopsis thaliana GN=At5g22880 PE=1 SV=3)

HSP 1 Score: 174.481 bits (441), Expect = 3.463e-43
Identity = 89/92 (96.74%), Postives = 91/92 (98.91%), Query Frame = -1
Query:  179 NVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 454
            NVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLA E+S+LARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   54 NVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAGESSKLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 145          
BLAST of CB304739 vs. ExPASy Swiss-Prot
Match: H2B2_MEDTR (Probable histone H2B.2 OS=Medicago truncatula PE=3 SV=3)

HSP 1 Score: 174.096 bits (440), Expect = 4.523e-43
Identity = 93/111 (83.78%), Postives = 97/111 (87.39%), Query Frame = -1
Query:  179 ISKDGGGV--EXXXXXXXKNVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 505
            + K+GG    E       K+VETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKL QE+SRLARYNKKPTITSREIQTAVRLVLPGELAKH VSEGTKAVTKFTSS
Sbjct:   38 LPKEGGSAAGEKKKKRSKKSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLTQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHDVSEGTKAVTKFTSS 148          
BLAST of CB304739 vs. ExPASy Swiss-Prot
Match: H2B1_MAIZE (Histone H2B.1 OS=Zea mays PE=2 SV=3)

HSP 1 Score: 172.555 bits (436), Expect = 1.316e-42
Identity = 90/108 (83.33%), Postives = 97/108 (89.81%), Query Frame = -1
Query:  179 SKDGGGVEXXXXXXXKNVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 502
            SK+GG  +       K+VETYKIYIFKVLKQVHPDIGISSKAM IMNSFINDIFEKLA E+++LARYNKKPTITSREIQT+VRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   44 SKEGGEGKKGKKKAKKSVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAAESAKLARYNKKPTITSREIQTSVRLVLPGELAKHAVSEGTKAVTKFTSS 151          
The following BLAST results are available for this feature:
BLAST of CB304739 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 205
Match NameE-valueIdentityDescription
H2B3_MEDTR5.343e-4486.24Probable histone H2B.3 OS=Medicago truncatula PE=3... [more]
H2B1_ARATH5.343e-4497.83Histone H2B.1 OS=Arabidopsis thaliana GN=At1g07790... [more]
H2B9_ARATH2.652e-4383.78Histone H2B.9 OS=Arabidopsis thaliana GN=At5g02570... [more]
H2B7_ARATH3.463e-4386.67Histone H2B.7 OS=Arabidopsis thaliana GN=At3g46030... [more]
H2B6_ARATH3.463e-4386.67Histone H2B.6 OS=Arabidopsis thaliana GN=H2B PE=1 ... [more]
H2B1_ORYSJ3.463e-4385.32Histone H2B.1 OS=Oryza sativa subsp. japonica GN=H... [more]
H2B1_ORYSI3.463e-4385.32Histone H2B.1 OS=Oryza sativa subsp. indica GN=OsI... [more]
H2B10_ARATH3.463e-4396.74Histone H2B.10 OS=Arabidopsis thaliana GN=At5g2288... [more]
H2B2_MEDTR4.523e-4383.78Probable histone H2B.2 OS=Medicago truncatula PE=3... [more]
H2B1_MAIZE1.316e-4283.33Histone H2B.1 OS=Zea mays PE=2 SV=3[more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IIaR_B09 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IIaR_B09 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304739 ID=CB304739; Name=CB304739; organism=Citrus sinensis; type=EST; length=586bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTATAGAAGACAATAAGTTTTC
ATTAATCTGTCCATAAGAAGCATTATCAGGAGCAAACCCTAGGCTAGGCG
GGGCGGCTAAAAAGTAACGAAAGGAACAATTTCAAAAGAACACGGAACAC
TAACAAGACAAAAAATTGCACAAAATCAAGAGCTCGTGAACTTGGTAACG
GCCTTGGTCCCCTCCGACACGGCGTGCTTGGCCAATTCACCGGGCAAGAC
CAATCTCACGGCGGTCTGGATCTCCCTCGACGTGATCGTCGGCTTCTTGT
TGTACCTAGCGAGACGAGACGCCTCTTGGGCTAATTTCTCGAAGATATCG
TTGATGAAACTGTTCATGATGCCCATGGCCTTGCTGGAGATACCGATATC
GGGATGAACCTGCTTCAGGACCTTGAAAATGTAGATCTTGTACGTCTCCA
CATTCTTCTTCAACTTCCTCTTCTTTTTCTCGACGCCGCCGCCATCTTTC
GAGATCTTCTTCTCGGCTTTCGGCCTCTTCTCGGCTGGGGCTTTCTCGGC
TACCGGCTTTTTCTCCGCTGGCTTCTTCTCGGCTTT
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