CB304885

Overview
NameCB304885
Unique NameCB304885
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length603
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB304885 vs. ExPASy Swiss-Prot
Match: RLA3_SCHPO (60S acidic ribosomal protein P1-alpha 3 OS=Schizosaccharomyces pombe GN=rpa3 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.964e-12
Identity = 34/61 (55.74%), Postives = 47/61 (77.05%), Query Frame = -3
Query:  410 MSASELACTYACLILHDDGIAITTDKIAQLVKAANVSIESYWPSLFAKLLEKRNLDDLIMN 592
            MSASELA +Y+ LIL D+GI IT+DK+  L KAANV +E  W ++FAK LE ++L +L++N
Sbjct:    1 MSASELATSYSALILADEGIEITSDKLLSLTKAANVDVEPIWATIFAKALEGKDLKELLLN 61          
BLAST of CB304885 vs. ExPASy Swiss-Prot
Match: RLA1_SCHPO (60S acidic ribosomal protein P1-alpha 1 OS=Schizosaccharomyces pombe GN=rpa1 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.964e-12
Identity = 34/61 (55.74%), Postives = 47/61 (77.05%), Query Frame = -3
Query:  410 MSASELACTYACLILHDDGIAITTDKIAQLVKAANVSIESYWPSLFAKLLEKRNLDDLIMN 592
            MSASELA +Y+ LIL D+GI IT+DK+  L KAANV +E  W ++FAK LE ++L +L++N
Sbjct:    1 MSASELATSYSALILADEGIEITSDKLLSLTKAANVDVEPIWATIFAKALEGKDLKELLLN 61          
BLAST of CB304885 vs. ExPASy Swiss-Prot
Match: RLA5_SCHPO (60S acidic ribosomal protein P1-alpha 5 OS=Schizosaccharomyces pombe GN=rpa5 PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.565e-12
Identity = 34/61 (55.74%), Postives = 46/61 (75.41%), Query Frame = -3
Query:  410 MSASELACTYACLILHDDGIAITTDKIAQLVKAANVSIESYWPSLFAKLLEKRNLDDLIMN 592
            MSASELA +YA LIL D+GI IT+DK+  L KA NV +E  W ++FAK LE ++L +L++N
Sbjct:    1 MSASELATSYAALILADEGIEITSDKLLSLTKAGNVEVEPIWATIFAKALEGKDLKELLLN 61          
BLAST of CB304885 vs. ExPASy Swiss-Prot
Match: RLA1_CHICK (60S acidic ribosomal protein P1 OS=Gallus gallus GN=RPLP1 PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.565e-12
Identity = 33/60 (55.00%), Postives = 42/60 (70.00%), Query Frame = -3
Query:  410 SASELACTYACLILHDDGIAITTDKIAQLVKAANVSIESYWPSLFAKLLEKRNLDDLIMN 589
            S SELAC Y+ LILHDD + +T DKI  L+KAA V++E +WP LFAK L   ++  LI N
Sbjct:    3 SVSELACIYSALILHDDEVTVTEDKINALIKAAGVNVEPFWPGLFAKALANIDIGSLICN 62          
BLAST of CB304885 vs. ExPASy Swiss-Prot
Match: RLA1_OSCBR (60S acidic ribosomal protein P1 OS=Oscheius brevesophaga GN=rpl-21 PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.349e-12
Identity = 35/58 (60.34%), Postives = 42/58 (72.41%), Query Frame = -3
Query:  416 SASELACTYACLILHDDGIAITTDKIAQLVKAANVSIESYWPSLFAKLLEKRNLDDLI 589
            S  ELAC YA LIL DD +AIT DKIA L+KAAN+  E +WP LFAK LE  ++ +LI
Sbjct:    3 SPQELACVYAALILQDDEVAITGDKIATLLKAANIEFEPFWPGLFAKALEGVDVKNLI 60          
BLAST of CB304885 vs. ExPASy Swiss-Prot
Match: RLA1_CAEEL (60S acidic ribosomal protein P1 OS=Caenorhabditis elegans GN=rla-1 PE=1 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 3.349e-12
Identity = 36/58 (62.07%), Postives = 42/58 (72.41%), Query Frame = -3
Query:  416 SASELACTYACLILHDDGIAITTDKIAQLVKAANVSIESYWPSLFAKLLEKRNLDDLI 589
            S  ELAC YA LIL DD +AIT +KIA L+KAANV  E YWP LFAK LE  ++ +LI
Sbjct:    3 SNQELACVYAALILQDDEVAITGEKIATLLKAANVEFEPYWPGLFAKALEGVDVKNLI 60          
BLAST of CB304885 vs. ExPASy Swiss-Prot
Match: RLA1_PIG (60S acidic ribosomal protein P1 OS=Sus scrofa GN=RPLP1 PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 9.746e-12
Identity = 32/60 (53.33%), Postives = 40/60 (66.67%), Query Frame = -3
Query:  410 SASELACTYACLILHDDGIAITTDKIAQLVKAANVSIESYWPSLFAKLLEKRNLDDLIMN 589
            S SELAC Y+ LILHDD + +  DKI  L+KAA V++E +WP  FAK L   N+  LI N
Sbjct:    3 SVSELACIYSALILHDDEVTVPEDKINALIKAAGVNVEPFWPGFFAKALANVNIGSLICN 62          
BLAST of CB304885 vs. ExPASy Swiss-Prot
Match: RLA1_POLPE (60S acidic ribosomal protein P1 OS=Polyorchis penicillatus PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.273e-11
Identity = 35/60 (58.33%), Postives = 45/60 (75.00%), Query Frame = -3
Query:  410 SASELACTYACLILHDDGIAITTDKIAQLVKAANVSIESYWPSLFAKLLEKRNLDDLIMN 589
            S SELAC Y+ LILHDD  AIT +K+ +++ AANV++E YWP LFA  LE +N+ DLI N
Sbjct:    5 STSELACVYSALILHDD--AITAEKMNKIISAANVNVEPYWPGLFA--LEGKNIGDLICN 60          
BLAST of CB304885 vs. ExPASy Swiss-Prot
Match: RLA1_DICDI (60S acidic ribosomal protein P1 OS=Dictyostelium discoideum GN=rplp1 PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.273e-11
Identity = 30/61 (49.18%), Postives = 45/61 (73.77%), Query Frame = -3
Query:  410 MSASELACTYACLILHDDGIAITTDKIAQLVKAANVSIESYWPSLFAKLLEKRNLDDLIMN 592
            +   ELAC Y+ L+L DDGI IT DKI  L++AAN+++ S+WP L+A+ L K N+ +L++N
Sbjct:    4 IKTEELACIYSGLLLQDDGIEITADKIKTLLEAANITVASHWPGLYARSLAKVNIPELLLN 64          
BLAST of CB304885 vs. ExPASy Swiss-Prot
Match: RLA1_ASPFU (60S acidic ribosomal protein P1 OS=Aspergillus fumigatus GN=AFUA_1G06830 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.836e-11
Identity = 35/62 (56.45%), Postives = 45/62 (72.58%), Query Frame = -3
Query:  410 MSASELACTYACLILHDDGIAITTDKIAQLVKAANVS-IESYWPSLFAKLLEKRNLDDLIMN 592
            MS +ELAC+YA LIL DDG+ IT DKI  L+ AA V+ +E  W SLFAK LE +++ DL+ N
Sbjct:    1 MSTAELACSYAALILADDGVEITADKIQTLLGAAKVADVEPIWTSLFAKALEGKDIKDLLTN 62          
The following BLAST results are available for this feature:
BLAST of CB304885 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
RLA3_SCHPO1.964e-1255.7460S acidic ribosomal protein P1-alpha 3 OS=Schizos... [more]
RLA1_SCHPO1.964e-1255.7460S acidic ribosomal protein P1-alpha 1 OS=Schizos... [more]
RLA5_SCHPO2.565e-1255.7460S acidic ribosomal protein P1-alpha 5 OS=Schizos... [more]
RLA1_CHICK2.565e-1255.0060S acidic ribosomal protein P1 OS=Gallus gallus G... [more]
RLA1_OSCBR3.349e-1260.3460S acidic ribosomal protein P1 OS=Oscheius breves... [more]
RLA1_CAEEL3.349e-1262.0760S acidic ribosomal protein P1 OS=Caenorhabditis ... [more]
RLA1_PIG9.746e-1253.3360S acidic ribosomal protein P1 OS=Sus scrofa GN=R... [more]
RLA1_POLPE1.273e-1158.3360S acidic ribosomal protein P1 OS=Polyorchis peni... [more]
RLA1_DICDI1.273e-1149.1860S acidic ribosomal protein P1 OS=Dictyostelium d... [more]
RLA1_ASPFU2.836e-1156.4560S acidic ribosomal protein P1 OS=Aspergillus fum... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IaR_E08 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IaR_E08 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304885 ID=CB304885; Name=CB304885; organism=Citrus sinensis; type=EST; length=603bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGCAATCAATGACAAAGAAAA
TAAAAATTGATCCACAATACTTGTATACATCCAGAATCTCGAACACACAA
TGCAGAACCAAAGCAACTACTTAACACTTTCTGTTCACTCAGGGTTACCT
ATACTTCAAATCTTAACAAACAAAGATAGATACTACTAATAGGTCAAAAA
GACAATTAATCTTAAGAGTTGTAAACCAGCACCAGACCAAATCATTCTGA
AAGGAGCTCCTAATCAAACAAGCTGAAGCCCATATCTTCGTCACTTTCTT
CCTTGGGTTCTTCCTTCTTCTCCTCCGGGGGGGGAGCAGCAGCATCAGCC
CCAGCACCTCCAGCAGGAGCTGCAACAGCAACTGCACCACCGCCACCACC
AGACCCCACATTCATTATAAGATCATCTAAGTTCCGCTTCTCTAAGAGCT
TAGCAAACAAACTGGGCCAGTAAGATTCAATAGACACGTTGGCAGCCTTC
ACCAGTTGTGCAATCTTATCCGTAGTAATGGCGATGCCGTCATCGTGGAG
GATCAAACAGGCATAAGTACAAGCAAGCTCCGAAGCCGACATTGCTTTGA
CTC
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