CB304894
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CB304894 vs. ExPASy Swiss-Prot
Match: PABPX_ARATH (Probable polyadenylate-binding protein At2g36660 OS=Arabidopsis thaliana GN=At2g36660 PE=2 SV=1) HSP 1 Score: 175.252 bits (443), Expect = 2.238e-43 Identity = 82/193 (42.49%), Postives = 131/193 (67.88%), Query Frame = -2 Query: 33 NFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSPFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNGKKFDDREWYVGKA 611 N + LN K IR+M+S R P R++G GN+F+KNL +S+ + L D F FGNI+SCK+AT G+S+G+GFVQFE +++A AI LN ++ DK+++VG F++K +R V + K+ N+++KNLD +++ L++ F E+G I S + +D + + + FVNF+N +DA +A + +NG KF + YVG+A Sbjct: 86 NNSLLNGKMIRVMWSVRAPDARRNGVGNVFVKNLPESVTNAVLQDMFKKFGNIVSCKVATLEDGKSRGYGFVQFEQEDAAHAAIQTLNSTIVADKEIYVGKFMKKTDR--VKPEEKYTNLYMKNLDADVSEDLLREKFAEFGKIVSLAIAKDENRLCRGYAFVNFDNPEDARRAAETVNGTKFGSKCLYVGRA 276 HSP 2 Score: 119.783 bits (299), Expect = 1.116e-26 Identity = 65/178 (36.52%), Postives = 100/178 (56.18%), Query Frame = -2 Query: 33 NIFIKNLDKSIDHKALHDTFSPFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIK------------TKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNGKKFDDREWYVGKA 530 N+++KNLD + L + F+ FG I+S IA D + +G+ FV F+N E A+ A + +NG K ++VG +K ERE + + K +N++VKN++ + T+E+L+K F + GTITS +M D GKSK FGFV F ++A AV +G+ F + YV A Sbjct: 202 NLYMKNLDADVSEDLLREKFAEFGKIVSLAIAKDENRLCRGYAFVNFDNPEDARRAAETVNGTKFGSKCLYVGRAQKKAEREQLLREQFKEKHEEQKMIAKVSNIYVKNVNVAVTEEELRKHFSQCGTITSTKLMCDEKGKSKGFGFVCFSTPEEAIDAVKTFHGQMFHGKPLYVAIA 379 HSP 3 Score: 103.219 bits (256), Expect = 1.081e-21 Identity = 61/168 (36.31%), Postives = 94/168 (55.95%), Query Frame = -2 Query: 36 TGNIFIKNLDKSIDHKALHDTFSPFGNILSCKIATDGS-GQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNGKKFDDREWYVGK 536 T ++++ +L S+ L+D F+ F ++ S ++ D S G+S +G+ F +++ A AI+K N L+N K + V +R + A + NVFVKNL ES T+ L+ +F ++G I S V DGKS+ +GFV FE D A A+ LN D+E YVGK Sbjct: 23 TASLYVGDLHPSVTEGILYDAFAEFKSLTSVRLCKDASSGRSLCYGYANFLSRQDANLAIEKKNNSLLNGKMIRVMWSVRAPD----ARRNGVGNVFVKNLPESVTNAVLQDMFKKFGNIVSCKVATLEDGKSRGYGFVQFEQEDAAHAAIQTLNSTIVADKEIYVGK 186
BLAST of CB304894 vs. ExPASy Swiss-Prot
Match: PAP1B_DICDI (Polyadenylate-binding protein 1-B OS=Dictyostelium discoideum GN=pabpc1B PE=3 SV=1) HSP 1 Score: 156.377 bits (394), Expect = 1.076e-37 Identity = 84/175 (48.00%), Postives = 116/175 (66.29%), Query Frame = -2 Query: 93 LNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSPFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDL-KKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENVDDAAK 614 LN+T ++ K RIM+S+RDP+ RK+ GNIF+KNL+K +D+ L+DTFS FGNILSCK+ + G SKG+G+V FE +SA+ AI+K+NG LI K + V F+ K ER V N VF +N DES T E L +++ +G I S ++ D +GKSK G V F+N +DA K Sbjct: 247 LNYTLVHGKPCRIMWSYRDPTKRKTNVGNIFVKNLEKGVDNAMLYDTFSSFGNILSCKVEFE-KGISKGYGYVHFETNDSAEKAIEKVNGTLILGKPINVERFVSKVERYKVE-----NKVFFRNADESITIEILQQELSNRFGEIESCILKNDANGKSKGLGLVEFKNQEDAQK 415 HSP 2 Score: 98.2117 bits (243), Expect = 3.477e-20 Identity = 57/179 (31.84%), Postives = 96/179 (53.63%), Query Frame = -2 Query: 51 IFIKNLDKSIDHKALHDTFSP-FGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLI------------------NDKQVFVGHFLRKQERET-VAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNGKKFDDRE 527 +F +N D+SI + L S FG I SC + D +G+SKG G V+F+N+E AQ + + ++I N K + + K ER T KT ++F+ N+DES + +K+ F ++GTI +++D + ++K FGF++F + +A KA+D+LNG F ++ Sbjct: 361 VFFRNADESITIEILQQELSNRFGEIESCILKNDANGKSKGLGLVEFKNQEDAQKILTESGALIISTIDGTTTVSSNGGTIEINGKPITIDRIKSKVERFTEYRKKTTDLSLFINNIDESIDRDLIKEEFAKHGTIIGIKIVQDENARNKGFGFISFSEIQEAQKALDSLNGFTFGSKQ 539 HSP 3 Score: 72.7886 bits (177), Expect = 1.565e-12 Identity = 48/156 (30.77%), Postives = 80/156 (51.28%), Query Frame = -2 Query: 72 NIFIKNLDKSIDHKALHDTFSPFGN--ILSCKIATDGSG-QSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNG 530 ++++ +L ++ L++ FS G I S + D + +S G+ +V F N A+ A+D LN L++ K + R + KT N+FVKNL++ + L F +G I S V + G SK +G+V+FE D A KA++ +NG Sbjct: 185 SLYVGDLAADVNEIILNELFSKVGRNAIASIHVCRDSNTLRSLGYAYVNFFNNHDAERALDTLNYTLVHGKPCRIMWSYRDPTKR----KTNVGNIFVKNLEKGVDNAMLYDTFSSFGNILSCKVEFE-KGISKGYGYVHFETNDSAEKAIEKVNG 335
BLAST of CB304894 vs. ExPASy Swiss-Prot
Match: PAP1M_HUMAN (Polyadenylate-binding protein 1-like 2 OS=Homo sapiens GN=PABPC1L2A PE=1 SV=1) HSP 1 Score: 139.043 bits (349), Expect = 1.778e-32 Identity = 70/135 (51.85%), Postives = 96/135 (71.11%), Query Frame = -2 Query: 216 LNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSPFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDE 614 LNF + + +RIM+S RDPS+RKSG GN+FIKNL K+ID+KAL++ FS FGNILSCK+A D G KG+GFV F+ +ESA+ AID +NGM +N +++FVG F +ERE A + + VK+ +E T +E Sbjct: 63 LNFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILSCKVACDEKG-PKGYGFVHFQKQESAERAIDVMNGMFLNYRKIFVGRFKSHKEREAERGAWARQSTSADVKDFEEDTDEE 196 HSP 2 Score: 82.8037 bits (203), Expect = 1.512e-15 Identity = 50/166 (30.12%), Postives = 91/166 (54.82%), Query Frame = -2 Query: 36 NIFIKNLDKSIDHKALHDTFSPFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNGKKFDDREWYVGK 530 ++++ +L + L++ FSP G ILS +I D + +S G+ +V ++ A+ A++ LN +I + V + +R+ K+ NVF+KNL ++ ++ L IF +G I S V D G K +GFV+F+ + A +A+D +NG + R+ +VG+ Sbjct: 3 SLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALETLNFDVIKGRPVRI----MWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILSCKVACDEKGP-KGYGFVHFQKQESAERAIDVMNGMFLNYRKIFVGR 163
BLAST of CB304894 vs. ExPASy Swiss-Prot
Match: PABP_ENCCU (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Encephalitozoon cuniculi GN=PAB1 PE=1 SV=1) HSP 1 Score: 119.013 bits (297), Expect = 1.904e-26 Identity = 67/180 (37.22%), Postives = 101/180 (56.11%), Query Frame = -2 Query: 72 LNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSPFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAI---DKLNGMLINDKQVFVGHFLRK-QERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNG 599 L+N+ IR+M P TGNIF+KNL + K L D FS FG I+SCK+AT G+SKG+GFVQF+ K++A+ I L+G+L+ ++ V + + ++ E+ F N F+KN ++ +L ++ YG +TS +GK K F F NFEN + A A+ L+G Sbjct: 78 LHNRQIRVMKKDERPP----ETGNIFVKNLPEDFTGKDLDDAFSMFGEIVSCKVATTSHGKSKGYGFVQFKEKKAAKKVIKNFSSLDGLLLGGNRIVVELYNPEIKKGESKKTSATFTNCFIKNFPFDASEAELLELLERYGKVTSLFFPVKDNGKPKGFAFANFENHESALNAIKNLHG 253 HSP 2 Score: 73.559 bits (179), Expect = 9.172e-13 Identity = 54/159 (33.96%), Postives = 75/159 (47.17%), Query Frame = -2 Query: 87 DPSIRKSGTG-NIFIKNLDKSIDHKALHDTFSPFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENVDDAAKAV 560 D S R S I++ L L FS G +LS K+ S F FV FEN+E A+ AI + ++++Q+ V ++K ER + N+FVKNL E T +DL F +G I S V GKSK +GFV F+ A K + Sbjct: 4 DESKRASSDSLTIYVGELSPKTLDSDLFRVFSNVGKVLSVKLIKRAEPVSS-FAFVTFENEEDAERAIREYKHYELHNRQIRV---MKKDER-----PPETGNIFVKNLPEDFTGKDLDDAFSMFGEIVSCKVATTSHGKSKGYGFVQFKEKKAAKKVI 153 HSP 3 Score: 71.2478 bits (173), Expect = 4.552e-12 Identity = 57/208 (27.40%), Postives = 94/208 (45.19%), Query Frame = -2 Query: 75 VLNFTPLNNKSI---RIMYSHRDPSIRKSGTG-------NIFIKNLDKSIDHKALHDTFSPFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLI-------NDKQVFVGHFLRKQER--------ETVAIKTKF--NNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALN 617 + NF+ L+ + RI+ +P I+K + N FIKN L + +G + S +G+ KGF F FEN ESA NAI L+G + ++ RK+ER E ++++ + N+++ N+ E E+L IF E+G ITS V DG K + ++ + ++A+ AV+ N Sbjct: 153 IKNFSSLDGLLLGGNRIVVELYNPEIKKGESKKTSATFTNCFIKNFPFDASEAELLELLERYGKVTSLFFPVKDNGKPKGFAFANFENHESALNAIKNLHGTFPFGAGRDGTGEAFYIQKGQRKEERAEELRKMFEQMSMQGQSYKKNLYITNIPEGFGCEELGSIFKEFGNITSISVGVDGANSQKQYAYICYSTPEEASIAVERGN 360
BLAST of CB304894 vs. ExPASy Swiss-Prot
Match: PES4_YEAST (Protein PES4 OS=Saccharomyces cerevisiae GN=PES4 PE=2 SV=2) HSP 1 Score: 89.7373 bits (221), Expect = 1.237e-17 Identity = 67/232 (28.88%), Postives = 105/232 (45.26%), Query Frame = -2 Query: 33 LNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNL---DKSIDHKALHDTFSPFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQER--------------ETVAIK---------------------TKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNGKKFDDREWYVGKA 614 LN+T +N K IRIM S R+ + RK+ N+F NL + + + +DTFS +G ILSCK+ K GFV FE++++A+N I N K++ G K+ R ET+ K + N++F+KNL TT +D+ F E G I S + + + + FV ++N D+ KA+ N F ++ V +A Sbjct: 152 LNYTKVNGKEIRIMPSLRNTTFRKNFGTNVFFSNLPLNNPLLTTRVFYDTFSRYGKILSCKL-----DSRKDIGFVYFEDEKTARNVIKMYNNTSFFGKKILCGIHFDKEVRSVPNFETQKSRLDAETIIEKEQSLNEKHSKGNDKESKNIYSSSQNSIFIKNLPTITTRDDILNFFSEVGPIKS-IYLSNATKVKYLWAFVTYKNSSDSEKAIKRYNNFYFRGKKLLVTRA 377
BLAST of CB304894 vs. ExPASy Swiss-Prot
Match: SXL_CHRRU (Sex-lethal homolog OS=Chrysomya rufifacies GN=SXL PE=2 SV=2) HSP 1 Score: 88.5817 bits (218), Expect = 2.755e-17 Identity = 53/154 (34.42%), Postives = 85/154 (55.19%), Query Frame = -2 Query: 75 NIFIKNLDKSIDHKALHDTFSPFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENVDDAAKAVDALN 530 N+ + L + + + L+ F G I +C+I D +G S G+ FV F ++ AQNAI LNG+ + +K++ V + E K N++V NL + TD++L+KIFG+YG I ++RD GK + FV F ++A +A+ ALN Sbjct: 86 NLIVNYLPQDMTDRELYALFRTCGPINTCRIMKDYKTGYSFGYAFVDFASEIDAQNAIKSLNGVTVRNKRLKVSYARPGGE------SIKDTNLYVTNLPRTITDDELEKIFGKYGNIVQKNILRDKLTGKPRGVAFVRFNKREEAQEAISALN 233
BLAST of CB304894 vs. ExPASy Swiss-Prot
Match: SXL_MEGSC (Sex-lethal homolog OS=Megaselia scalaris GN=SXL PE=2 SV=3) HSP 1 Score: 87.4261 bits (215), Expect = 6.138e-17 Identity = 57/161 (35.40%), Postives = 89/161 (55.28%), Query Frame = -2 Query: 75 SGTGNIFIKNLDKSIDHKALHDTFSPFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLR---KQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENVDDAAKAVDALN 542 SGT N+ + L + + + L+ F G I +C+I D +G S G+GFV F ++ A AI+ LNG+ + +K++ V F R +Q R+T N++V NL S TDE L+ IFG+YG I ++RD G + F+ F ++A +A+ ALN Sbjct: 76 SGT-NLIVNYLPQDMQDRELYSLFRTIGPINTCRIMRDYKTGYSYGYGFVDFGSEADALRAINNLNGITVRNKRIKVS-FARPGGEQLRDT--------NLYVTNLSRSITDEQLETIFGKYGQIVQKNILRDKHTGTPRGVAFIRFNKREEAQEAISALN 226
BLAST of CB304894 vs. ExPASy Swiss-Prot
Match: SXL_MUSDO (Sex-lethal homolog OS=Musca domestica GN=SXL PE=2 SV=1) HSP 1 Score: 85.8853 bits (211), Expect = 1.786e-16 Identity = 51/154 (33.12%), Postives = 85/154 (55.19%), Query Frame = -2 Query: 75 NIFIKNLDKSIDHKALHDTFSPFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENVDDAAKAVDALN 530 N+ + L + + + L+ F G I +C+I D +G S G+ FV F ++ AQNAI +NG+ + +K++ V + E K N++V NL + TD++L+KIFG+YG I ++RD G+ + FV F ++A +A+ ALN Sbjct: 103 NLIVNYLPQDMTDRELYALFRTCGPINTCRIMKDYKTGYSFGYAFVDFASEIDAQNAIKTVNGITVRNKRLKVSYARPGGE------SIKDTNLYVTNLPRTITDDELEKIFGKYGNIVQKNILRDKLTGRPRGVAFVRFNKREEAQEAISALN 250
BLAST of CB304894 vs. ExPASy Swiss-Prot
Match: ELAV2_XENTR (ELAV-like protein 2 OS=Xenopus tropicalis GN=elavl2 PE=2 SV=2) HSP 1 Score: 83.5741 bits (205), Expect = 8.864e-16 Identity = 47/157 (29.94%), Postives = 87/157 (55.41%), Query Frame = -2 Query: 66 NIFIKNLDKSIDHKALHDTFSPFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYG-TITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNGKK 530 N+ + L +++ + L F G I SCK+ D +GQS G+GFV + + + A+ AI+ LNG+ + K + V + + + N++V L ++ T ++L+++F +YG ITS +++ G S+ GF+ F+ +A +A+ LNG+K Sbjct: 68 NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSY------ARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQK 218
BLAST of CB304894 vs. ExPASy Swiss-Prot
Match: ELAV2_PONAB (ELAV-like protein 2 OS=Pongo abelii GN=ELAVL2 PE=2 SV=1) HSP 1 Score: 83.1889 bits (204), Expect = 1.158e-15 Identity = 47/157 (29.94%), Postives = 87/157 (55.41%), Query Frame = -2 Query: 66 NIFIKNLDKSIDHKALHDTFSPFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYG-TITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNGKK 530 N+ + L +++ + L F G I SCK+ D +GQS G+GFV + + + A+ AI+ LNG+ + K + V + + + N++V L ++ T ++L+++F +YG ITS +++ G S+ GF+ F+ +A +A+ LNG+K Sbjct: 40 NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSY------ARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQK 190 The following BLAST results are available for this feature:
BLAST of CB304894 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 157
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Sequences
The
following sequences are available for this feature:
EST sequence >CB304894 ID=CB304894; Name=CB304894; organism=Citrus sinensis; type=EST; length=618bpback to top |