CB304894
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CB304894 vs. ExPASy Swiss-Prot
Match: PABP2_ARATH (Polyadenylate-binding protein 2 OS=Arabidopsis thaliana GN=PAB2 PE=1 SV=1) HSP 1 Score: 314.694 bits (805), Expect = 2.364e-85 Identity = 148/194 (76.29%), Postives = 173/194 (89.18%), Query Frame = -2 Query: 33 LNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSPFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNGKKFDDREWYVGKA 614 LN+ PL K IR+MYSHRDPS+R+SG GNIFIKNLD+SIDHKALHDTFS FGNI+SCK+A D SGQSKG+GFVQ+ N+ESAQ AI+KLNGML+NDKQV+VG FLR+QER++ A KTKF NV+VKNL ESTTD+DLK FGEYG ITSAVVM+DG+GKSK FGFVNFEN DDAA+AV++LNG KFDD+EWYVG+A Sbjct: 97 LNYIPLYGKPIRVMYSHRDPSVRRSGAGNIFIKNLDESIDHKALHDTFSSFGNIVSCKVAVDSSGQSKGYGFVQYANEESAQKAIEKLNGMLLNDKQVYVGPFLRRQERDSTANKTKFTNVYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGEGKSKGFGFVNFENADDAARAVESLNGHKFDDKEWYVGRA 290 HSP 2 Score: 147.132 bits (370), Expect = 6.528e-35 Identity = 83/210 (39.52%), Postives = 120/210 (57.14%), Query Frame = -2 Query: 33 LNFTPLNNKSIRI----MYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSPFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET------------VAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNGKKFDDREWYVGKA 614 LN LN+K + + RD + K+ N+++KNL +S L + F +G I S + DG G+SKGFGFV FEN + A A++ LNG +DK+ +VG +K ERET A K + +N++VKNLD S +DE LK+IF +GT+TS+ VMRD +G SK GFV F ++A +A+ L+GK + + YV A Sbjct: 184 LNGMLLNDKQVYVGPFLRRQERDSTANKTKFTNVYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGEGKSKGFGFVNFENADDAARAVESLNGHKFDDKEWYVGRAQKKSERETELRVRYEQNLKEAADKFQSSNLYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRDPNGTSKGSGFVAFATPEEATEAMSQLSGKMIESKPLYVAIA 393 HSP 3 Score: 77.411 bits (189), Expect = 6.352e-14 Identity = 39/98 (39.80%), Postives = 60/98 (61.22%), Query Frame = -2 Query: 252 KSGTGNIFIKNLDKSIDHKALHDTFSPFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNV 545 K + N+++KNLD SI + L + FSPFG + S K+ D +G SKG GFV F E A A+ +L+G +I K ++V RK++R V ++ +F+ V Sbjct: 314 KFQSSNLYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRDPNGTSKGSGFVAFATPEEATEAMSQLSGKMIESKPLYVAIAQRKEDRR-VRLQAQFSQV 410
BLAST of CB304894 vs. ExPASy Swiss-Prot
Match: PABP3_ARATH (Polyadenylate-binding protein 3 OS=Arabidopsis thaliana GN=PAB3 PE=2 SV=1) HSP 1 Score: 241.891 bits (616), Expect = 1.947e-63 Identity = 122/196 (62.24%), Postives = 152/196 (77.55%), Query Frame = -2 Query: 33 LNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSPFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQE--RETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNGKKFDDREWYVGKA 614 LN+TPL ++ IRIM S+RDPS R SG GNIFIKNLD SID+KAL +TFS FG ILSCK+A D +G+SKG+GFVQFE +ESAQ AIDKLNGML+NDKQVFVGHF+R+QE R+ +F NV+VKNL + +++L+K FG++G I+SAVVMRD G S+CFGFVNFE + AA AV+ +NG D YVG+A Sbjct: 109 LNYTPLFDRPIRIMLSNRDPSTRLSGKGNIFIKNLDASIDNKALFETFSSFGTILSCKVAMDVTGRSKGYGFVQFEKEESAQAAIDKLNGMLMNDKQVFVGHFIRRQERARDENTPTPRFTNVYVKNLPKEIGEDELRKTFGKFGVISSAVVMRDQSGNSRCFGFVNFECTEAAASAVEKMNGISLGDDVLYVGRA 304 HSP 2 Score: 132.494 bits (332), Expect = 1.664e-30 Identity = 74/197 (37.56%), Postives = 110/197 (55.84%), Query Frame = -2 Query: 33 IRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSPFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFN-------------NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNGKKFDDREWYVGKA 584 IR RD + N+++KNL K I L TF FG I S + D SG S+ FGFV FE E+A +A++K+NG+ + D ++VG +K ERE ++ KF N+++KNLD+S DE LK++F EYG +TS+ VM + G S+ FGFV + N ++A +A+ +NGK + Y+ A Sbjct: 212 IRRQERARDENTPTPRFTNVYVKNLPKEIGEDELRKTFGKFGVISSAVVMRDQSGNSRCFGFVNFECTEAAASAVEKMNGISLGDDVLYVGRAQKKSEREE-ELRRKFEQERINRFEKSQGANLYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLNPQGMSRGFGFVAYSNPEEALRALSEMNGKMIGRKPLYIALA 407 HSP 3 Score: 77.411 bits (189), Expect = 6.352e-14 Identity = 34/86 (39.53%), Postives = 55/86 (63.95%), Query Frame = -2 Query: 288 KSGTGNIFIKNLDKSIDHKALHDTFSPFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQER 545 KS N+++KNLD S+D + L + FS +GN+ S K+ + G S+GFGFV + N E A A+ ++NG +I K +++ RK++R Sbjct: 328 KSQGANLYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLNPQGMSRGFGFVAYSNPEEALRALSEMNGKMIGRKPLYIALAQRKEDR 413
BLAST of CB304894 vs. ExPASy Swiss-Prot
Match: PABP5_ARATH (Polyadenylate-binding protein 5 OS=Arabidopsis thaliana GN=PAB5 PE=1 SV=2) HSP 1 Score: 235.728 bits (600), Expect = 1.396e-61 Identity = 119/197 (60.41%), Postives = 154/197 (78.17%), Query Frame = -2 Query: 33 LNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSPFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQER---ETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNGKKFDDREWYVGKA 614 LN+ P+ ++ IRIM S+RDPS R SG GN+FIKNLD SID+KAL++TFS FG ILSCK+A D G+SKG+GFVQFE +E+AQ AIDKLNGML+NDKQVFVGHF+R+Q+R E+ A+ + F NV+VKNL + TD++LKK FG+YG I+SAVVM+D G S+ FGFVNF + + AA AV+ +NG + YVG+A Sbjct: 105 LNYAPIRDRPIRIMLSNRDPSTRLSGKGNVFIKNLDASIDNKALYETFSSFGTILSCKVAMDVVGRSKGYGFVQFEKEETAQAAIDKLNGMLLNDKQVFVGHFVRRQDRARSESGAVPS-FTNVYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQSGNSRSFGFVNFVSPEAAAVAVEKMNGISLGEDVLYVGRA 300 HSP 2 Score: 130.183 bits (326), Expect = 8.258e-30 Identity = 75/213 (35.21%), Postives = 118/213 (55.40%), Query Frame = -2 Query: 33 LNFTPLNNKSIRIMYSHRDPSIRKSGTG------NIFIKNLDKSIDHKALHDTFSPFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKF-------------NNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNGKKFDDREWYVGKA 614 LN LN+K + + + R +S +G N+++KNL K I L TF +G+I S + D SG S+ FGFV F + E+A A++K+NG+ + + ++VG +K +RE ++ KF +N+++KNLD+S DE LK++F EYG +TS VM + G S+ FGFV + N ++A A+ +NGK + YV A Sbjct: 192 LNGMLLNDKQVFVGHFVRRQDRARSESGAVPSFTNVYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQSGNSRSFGFVNFVSPEAAAVAVEKMNGISLGEDVLYVGRAQKKSDREE-ELRRKFEQERISRFEKLQGSNLYLKNLDDSVNDEKLKEMFSEYGNVTSCKVMMNSQGLSRGFGFVAYSNPEEALLAMKEMNGKMIGRKPLYVALA 403 HSP 3 Score: 77.7962 bits (190), Expect = 4.864e-14 Identity = 34/82 (41.46%), Postives = 55/82 (67.07%), Query Frame = -2 Query: 285 NIFIKNLDKSIDHKALHDTFSPFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERE 530 N+++KNLD S++ + L + FS +GN+ SCK+ + G S+GFGFV + N E A A+ ++NG +I K ++V RK+ER+ Sbjct: 329 NLYLKNLDDSVNDEKLKEMFSEYGNVTSCKVMMNSQGLSRGFGFVAYSNPEEALLAMKEMNGKMIGRKPLYVALAQRKEERQ 410
BLAST of CB304894 vs. ExPASy Swiss-Prot
Match: PABP_COCIM (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Coccidioides immitis GN=PAB1 PE=3 SV=1) HSP 1 Score: 228.409 bits (581), Expect = 2.228e-59 Identity = 110/197 (55.84%), Postives = 152/197 (77.16%), Query Frame = -2 Query: 33 LNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSPFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET--VAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGD-GKSKCFGFVNFENVDDAAKAVDALNGKKFDDREWYVGKA 614 LN+T + + RIM+S RDP++RK+G GN+FIKNLD +ID+KALHDTF+ FGNILSCK+A D G SKG+GFV +E E+AQNAI +NGML+NDK+VFVGH + K++R++ +K F NV+VKN+D+ TT+E+ + +F ++G ITSA + RD + GKS+ FGFVNF + D+AA AV+ALN K F ++ YVG+A Sbjct: 116 LNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAAQNAIKHVNGMLLNDKKVFVGHHIAKKDRQSKFEEMKANFTNVYVKNIDQDTTEEEFRDLFEKFGEITSATLARDAESGKSRGFGFVNFTSHDNAAAAVEALNDKDFKGQKLYVGRA 312 HSP 2 Score: 104.375 bits (259), Expect = 4.852e-22 Identity = 73/237 (30.80%), Postives = 107/237 (45.15%), Query Frame = -2 Query: 33 KSGTGNIFIKNLDKSIDHKALHDTFSPFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETV------------AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-------------------------------GD----------------------GKSKCFGFVNFENVDDAAKAVDALNGKKFDDREWYVGKA 545 K+ N+++KN+D+ + D F FG I S +A D SG+S+GFGFV F + ++A A++ LN ++++VG +K ERE A K + N+++KNL + DE L+++F YGTITSA VMRD GD GKSK FGFV F + D+A+KAV +N + + YV A Sbjct: 232 KANFTNVYVKNIDQDTTEEEFRDLFEKFGEITSATLARDAESGKSRGFGFVNFTSHDNAAAAVEALNDKDFKGQKLYVGRAQKKHEREEELRKQYEAARIEKASKYQGVNLYIKNLSDDIDDEKLRELFSSYGTITSAKVMRDFAPESTSDSEKEAKKDSKEPETKEEEPKDEAGDNAENKDNKENKAESKKSEKKPLGKSKGFGFVCFSSPDEASKAVTEMNQRMVHGKPLYVALA 468
BLAST of CB304894 vs. ExPASy Swiss-Prot
Match: PABP1_RAT (Polyadenylate-binding protein 1 OS=Rattus norvegicus GN=Pabpc1 PE=2 SV=1) HSP 1 Score: 228.024 bits (580), Expect = 2.910e-59 Identity = 113/196 (57.65%), Postives = 148/196 (75.51%), Query Frame = -2 Query: 33 LNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSPFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNGKKFDDREWYVGKA 614 +NF + K +RIM+S RDPS+RKSG GNIFIKNLDKSID+KAL+DTFS FGNILSCK+ D +G SKG+GFV FE +E+A+ AI+K+NGML+ND++VFVG F ++ERE A +F NV++KN E DE LK++FG++G S VM D GKSK FGFV+FE +DA KAVD +NGK+ + ++ YVG+A Sbjct: 72 MNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRA 266 HSP 2 Score: 146.747 bits (369), Expect = 8.526e-35 Identity = 81/179 (45.25%), Postives = 111/179 (62.01%), Query Frame = -2 Query: 33 NIFIKNLDKSIDHKALHDTFSPFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFN-------------NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNGKKFDDREWYVGKA 530 N++IKN + +D + L + F FG LS K+ TD SG+SKGFGFV FE E AQ A+D++NG +N KQ++VG +K ER+T +K KF N++VKNLD+ DE L+K F +GTITSA VM +G G+SK FGFV F + ++A KAV +NG+ + YV A Sbjct: 192 NVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQT-ELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 368 HSP 3 Score: 94.3597 bits (233), Expect = 5.021e-19 Identity = 55/176 (31.25%), Postives = 98/176 (55.68%), Query Frame = -2 Query: 36 DPSIRKSGTGNIFIKNLDKSIDHKALHDTFSPFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNGKKFDDREWYVGK 560 +PS ++++ +L + L++ FSP G ILS ++ D + +S G+ +V F+ A+ A+D +N +I K V + +R+ K+ N+F+KNLD+S ++ L F +G I S V+ D +G SK +GFV+FE + A +A++ +NG +DR+ +VG+ Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRI----MWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGR 172 HSP 4 Score: 77.411 bits (189), Expect = 6.352e-14 Identity = 37/82 (45.12%), Postives = 54/82 (65.85%), Query Frame = -2 Query: 285 NIFIKNLDKSIDHKALHDTFSPFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERE 530 N+++KNLD ID + L FSPFG I S K+ +G G+SKGFGFV F + E A A+ ++NG ++ K ++V RK+ER+ Sbjct: 295 NLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQ 375
BLAST of CB304894 vs. ExPASy Swiss-Prot
Match: PABP_NEOFI (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=pab1 PE=3 SV=1) HSP 1 Score: 227.639 bits (579), Expect = 3.800e-59 Identity = 107/196 (54.59%), Postives = 147/196 (75.00%), Query Frame = -2 Query: 33 LNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSPFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET--VAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNGKKFDDREWYVGKA 614 LN+T + K RIM+S RDP++RK+G GN+FIKNLD +ID+KALHDTF+ FGNILSCK+A D G SKG+GFV +E E+A NAI +NGML+NDK+VFVGH + K++R++ +K F NV++KN+D+ TDE+ +K+F ++G ITSA + RD +GKS+ FGFVNF D A AVD +N K+ ++ YVG+A Sbjct: 113 LNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDAAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNVYIKNIDQEVTDEEFRKMFEKFGEITSATLSRDQEGKSRGFGFVNFSTHDSAQAAVDEMNDKEIKGQKLYVGRA 308 HSP 2 Score: 112.079 bits (279), Expect = 2.327e-24 Identity = 73/228 (32.02%), Postives = 109/228 (47.81%), Query Frame = -2 Query: 33 KSGTGNIFIKNLDKSIDHKALHDTFSPFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERE------------TVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD----GD-----------------------------------------GKSKCFGFVNFENVDDAAKAVDALNGKKFDDREWYVGKA 545 K+ N++IKN+D+ + + F FG I S ++ D G+S+GFGFV F +SAQ A+D++N I ++++VG +K ERE A K + N++VKNL + DE L+++F +GTITSA VMRD G+ GKSK FGFV F + D+A+KAV +N + + + YV A Sbjct: 229 KANFTNVYIKNIDQEVTDEEFRKMFEKFGEITSATLSRDQEGKSRGFGFVNFSTHDSAQAAVDEMNDKEIKGQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGVNLYVKNLTDDVDDEKLRELFSPFGTITSAKVMRDTVTAGETSESEKEKESNKENEKEGEEKTEEKPKESEEEAKKTEKKILGKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALA 456
BLAST of CB304894 vs. ExPASy Swiss-Prot
Match: PABP_ASPFU (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Aspergillus fumigatus GN=pab1 PE=3 SV=1) HSP 1 Score: 227.639 bits (579), Expect = 3.800e-59 Identity = 107/196 (54.59%), Postives = 147/196 (75.00%), Query Frame = -2 Query: 33 LNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSPFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET--VAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNGKKFDDREWYVGKA 614 LN+T + K RIM+S RDP++RK+G GN+FIKNLD +ID+KALHDTF+ FGNILSCK+A D G SKG+GFV +E E+A NAI +NGML+NDK+VFVGH + K++R++ +K F NV++KN+D+ TDE+ +K+F ++G ITSA + RD +GKS+ FGFVNF D A AVD +N K+ ++ YVG+A Sbjct: 113 LNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDAAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNVYIKNIDQEVTDEEFRKMFEKFGEITSATLSRDQEGKSRGFGFVNFSTHDSAQAAVDEMNDKEIKGQKLYVGRA 308 HSP 2 Score: 111.309 bits (277), Expect = 3.969e-24 Identity = 73/230 (31.74%), Postives = 109/230 (47.39%), Query Frame = -2 Query: 33 KSGTGNIFIKNLDKSIDHKALHDTFSPFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERE------------TVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD----GD-------------------------------------------GKSKCFGFVNFENVDDAAKAVDALNGKKFDDREWYVGKA 545 K+ N++IKN+D+ + + F FG I S ++ D G+S+GFGFV F +SAQ A+D++N I ++++VG +K ERE A K + N++VKNL + DE L+++F +GTITSA VMRD G+ GKSK FGFV F + D+A+KAV +N + + + YV A Sbjct: 229 KANFTNVYIKNIDQEVTDEEFRKMFEKFGEITSATLSRDQEGKSRGFGFVNFSTHDSAQAAVDEMNDKEIKGQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGVNLYVKNLTDDVDDEKLRELFSPFGTITSAKVMRDTVTTGETSESEKEKEKESNKENEKEGEEKTEEKPKESEEEPKKTEKKILGKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALA 458
BLAST of CB304894 vs. ExPASy Swiss-Prot
Match: PABP1_MOUSE (Polyadenylate-binding protein 1 OS=Mus musculus GN=Pabpc1 PE=1 SV=1) HSP 1 Score: 227.639 bits (579), Expect = 3.800e-59 Identity = 113/196 (57.65%), Postives = 148/196 (75.51%), Query Frame = -2 Query: 33 LNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSPFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNGKKFDDREWYVGKA 614 +NF + K +RIM+S RDPS+RKSG GNIFIKNLDKSID+KAL+DTFS FGNILSCK+ D +G SKG+GFV FE +E+A+ AI+K+NGML+ND++VFVG F ++ERE A +F NV++KN E DE LK++FG++G S VM D GKSK FGFV+FE +DA KAVD +NGK+ + ++ YVG+A Sbjct: 72 MNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSQKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRA 266 HSP 2 Score: 146.747 bits (369), Expect = 8.526e-35 Identity = 81/179 (45.25%), Postives = 111/179 (62.01%), Query Frame = -2 Query: 33 NIFIKNLDKSIDHKALHDTFSPFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFN-------------NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNGKKFDDREWYVGKA 530 N++IKN + +D + L + F FG LS K+ TD SG+SKGFGFV FE E AQ A+D++NG +N KQ++VG +K ER+T +K KF N++VKNLD+ DE L+K F +GTITSA VM +G G+SK FGFV F + ++A KAV +NG+ + YV A Sbjct: 192 NVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQT-ELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 368 HSP 3 Score: 94.3597 bits (233), Expect = 5.021e-19 Identity = 55/176 (31.25%), Postives = 98/176 (55.68%), Query Frame = -2 Query: 36 DPSIRKSGTGNIFIKNLDKSIDHKALHDTFSPFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNGKKFDDREWYVGK 560 +PS ++++ +L + L++ FSP G ILS ++ D + +S G+ +V F+ A+ A+D +N +I K V + +R+ K+ N+F+KNLD+S ++ L F +G I S V+ D +G SK +GFV+FE + A +A++ +NG +DR+ +VG+ Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRI----MWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGR 172 HSP 4 Score: 77.411 bits (189), Expect = 6.352e-14 Identity = 37/82 (45.12%), Postives = 54/82 (65.85%), Query Frame = -2 Query: 285 NIFIKNLDKSIDHKALHDTFSPFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERE 530 N+++KNLD ID + L FSPFG I S K+ +G G+SKGFGFV F + E A A+ ++NG ++ K ++V RK+ER+ Sbjct: 295 NLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQ 375
BLAST of CB304894 vs. ExPASy Swiss-Prot
Match: PABPA_XENLA (Polyadenylate-binding protein 1-A OS=Xenopus laevis GN=pabpc1-A PE=1 SV=3) HSP 1 Score: 227.254 bits (578), Expect = 4.963e-59 Identity = 112/196 (57.14%), Postives = 147/196 (75.00%), Query Frame = -2 Query: 33 LNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSPFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNGKKFDDREWYVGKA 614 +NF + + +RIM+S RDPS+RKSG GNIFIKNLDKSID+KAL+DTFS FGNILSCK+ D +G SKG+GFV FE +E+A+ AIDK+NGML+ND++VFVG F ++ERE A +F NV++KN + DE LK++FG+YG S VM D +GKSK FGFV+FE +DA KAVD +NGK + + +VG+A Sbjct: 72 MNFDVIKGRPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGDDMNDERLKEMFGKYGPALSVKVMTDDNGKSKGFGFVSFERHEDAQKAVDEMNGKDMNGKSMFVGRA 266 HSP 2 Score: 138.272 bits (347), Expect = 3.032e-32 Identity = 78/179 (43.58%), Postives = 109/179 (60.89%), Query Frame = -2 Query: 33 NIFIKNLDKSIDHKALHDTFSPFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFN-------------NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNGKKFDDREWYVGKA 530 N++IKN ++ + L + F +G LS K+ TD +G+SKGFGFV FE E AQ A+D++NG +N K +FVG +K ER+T +K KF N++VKNLD+ DE L+K F +GTITSA VM +G G+SK FGFV F + ++A KAV +NG+ + YV A Sbjct: 192 NVYIKNFGDDMNDERLKEMFGKYGPALSVKVMTDDNGKSKGFGFVSFERHEDAQKAVDEMNGKDMNGKSMFVGRAQKKVERQT-ELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFLPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 368 HSP 3 Score: 95.5153 bits (236), Expect = 2.254e-19 Identity = 55/176 (31.25%), Postives = 99/176 (56.25%), Query Frame = -2 Query: 36 DPSIRKSGTGNIFIKNLDKSIDHKALHDTFSPFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNGKKFDDREWYVGK 560 +PS ++++ +L + + L++ FSP G ILS ++ D + +S G+ +V F+ A+ A+D +N +I + V + +R+ K+ N+F+KNLD+S ++ L F +G I S V+ D +G SK +GFV+FE + A +A+D +NG +DR+ +VG+ Sbjct: 2 NPSAPSYPMASLYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGRPVRI----MWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGR 172 HSP 4 Score: 75.0998 bits (183), Expect = 3.152e-13 Identity = 36/82 (43.90%), Postives = 53/82 (64.63%), Query Frame = -2 Query: 285 NIFIKNLDKSIDHKALHDTFSPFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERE 530 N+++KNLD ID + L F PFG I S K+ +G G+SKGFGFV F + E A A+ ++NG ++ K ++V RK+ER+ Sbjct: 295 NLYVKNLDDGIDDERLRKEFLPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQ 375
BLAST of CB304894 vs. ExPASy Swiss-Prot
Match: PABP1_PONAB (Polyadenylate-binding protein 1 OS=Pongo abelii GN=PABPC1 PE=2 SV=1) HSP 1 Score: 227.254 bits (578), Expect = 4.963e-59 Identity = 113/196 (57.65%), Postives = 147/196 (75.00%), Query Frame = -2 Query: 33 LNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSPFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNGKKFDDREWYVGKA 614 +NF + K +RIM+S RDPS+RKSG GNIFIKNLDKSID+KAL+DTFS FGNILSCK+ D +G SKG+GFV FE +E+A+ AI+K+NGML+ND++VFVG F ++ERE A +F NV++KN E DE LK +FG++G S VM D GKSK FGFV+FE +DA KAVD +NGK+ + ++ YVG+A Sbjct: 72 MNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRA 266 HSP 2 Score: 148.288 bits (373), Expect = 2.930e-35 Identity = 82/179 (45.81%), Postives = 111/179 (62.01%), Query Frame = -2 Query: 33 NIFIKNLDKSIDHKALHDTFSPFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFN-------------NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNGKKFDDREWYVGKA 530 N++IKN + +D + L D F FG LS K+ TD SG+SKGFGFV FE E AQ A+D++NG +N KQ++VG +K ER+T +K KF N++VKNLD+ DE L+K F +GTITSA VM +G G+SK FGFV F + ++A KAV +NG+ + YV A Sbjct: 192 NVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQT-ELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 368 HSP 3 Score: 92.8189 bits (229), Expect = 1.461e-18 Identity = 55/176 (31.25%), Postives = 97/176 (55.11%), Query Frame = -2 Query: 36 DPSIRKSGTGNIFIKNLDKSIDHKALHDTFSPFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNGKKFDDREWYVGK 560 +PS ++++ +L L++ FSP G ILS ++ D + +S G+ +V F+ A+ A+D +N +I K V + +R+ K+ N+F+KNLD+S ++ L F +G I S V+ D +G SK +GFV+FE + A +A++ +NG +DR+ +VG+ Sbjct: 2 NPSAPSYPMASLYVGDLHPDATEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRI----MWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGR 172 HSP 4 Score: 77.411 bits (189), Expect = 6.352e-14 Identity = 37/82 (45.12%), Postives = 54/82 (65.85%), Query Frame = -2 Query: 285 NIFIKNLDKSIDHKALHDTFSPFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERE 530 N+++KNLD ID + L FSPFG I S K+ +G G+SKGFGFV F + E A A+ ++NG ++ K ++V RK+ER+ Sbjct: 295 NLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQ 375 The following BLAST results are available for this feature:
BLAST of CB304894 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 157
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Sequences
The
following sequences are available for this feature:
EST sequence >CB304894 ID=CB304894; Name=CB304894; organism=Citrus sinensis; type=EST; length=618bpback to top |