CB305012

Overview
NameCB305012
Unique NameCB305012
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length579
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2325 contig Csv1_Contig2325:131..710. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB305012 vs. ExPASy Swiss-Prot
Match: EF1A_METS5 (Elongation factor 1-alpha OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348) GN=tuf PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 1.005e-23
Identity = 40/76 (52.63%), Postives = 59/76 (77.63%), Query Frame = -1
Query:  229 TLPSKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVE 456
            ++  + SE+V ++D ++GKE EK P+F+K G++ +VK  P KP+ VE FSD+PPLGRFA+RDM +TV VGVI +V+
Sbjct:  353 SIACRVSEIVARLDPKTGKEAEKNPQFIKQGESAIVKFKPIKPLCVEKFSDFPPLGRFAMRDMGKTVGVGVINDVK 428          

HSP 2 Score: 38.5058 bits (88), Expect = 1.005e-23
Identity = 17/41 (41.46%), Postives = 26/41 (63.41%), Query Frame = -3
Query:  440 DPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKV 562
            +P   A  FT++VI++ HP  +  GY PV+  HT+ IA +V
Sbjct:  318 NPPTVAEEFTARVIVVWHPTALAVGYTPVVHVHTASIACRV 358          
BLAST of CB305012 vs. ExPASy Swiss-Prot
Match: EF1A_SULTO (Elongation factor 1-alpha OS=Sulfolobus tokodaii GN=tuf PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.880e-23
Identity = 41/74 (55.41%), Postives = 59/74 (79.73%), Query Frame = -1
Query:  223 KFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKK 444
            + +EL +KID ++GKE+EK P+FLK+GD+ +VKM P K +VVE F ++P LGRFA+RDM +TV VGV+ +V+ K
Sbjct:  357 RITELTSKIDPKTGKEVEKNPQFLKSGDSAIVKMKPIKELVVEKFREFPALGRFAMRDMGKTVGVGVVIDVKPK 430          

HSP 2 Score: 38.891 bits (89), Expect = 2.880e-23
Identity = 16/46 (34.78%), Postives = 28/46 (60.87%), Query Frame = -3
Query:  440 SNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKV 577
            + S + P   A  FT+Q+I++ HP  +  GY PV+  HT+ +A ++
Sbjct:  313 AGSLNVPPTVADEFTAQIIVIWHPTAVSVGYTPVVHIHTASVACRI 358          
BLAST of CB305012 vs. ExPASy Swiss-Prot
Match: EF1A_PYRAE (Elongation factor 1-alpha OS=Pyrobaculum aerophilum GN=tuf PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 4.875e-23
Identity = 40/76 (52.63%), Postives = 60/76 (78.95%), Query Frame = -1
Query:  229 TLPSKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVE 456
            T+P + +ELV+K+D R+G+ +E++P+F+K GD  +VK+ P KP+V E FSD+PPLGRFA+RDM +T+A G I  V+
Sbjct:  362 TVPVQITELVSKLDPRTGQAVEQKPQFIKQGDVAIVKIKPLKPVVAEKFSDFPPLGRFALRDMGRTIAAGQILEVK 437          

HSP 2 Score: 36.5798 bits (83), Expect = 4.875e-23
Identity = 14/42 (33.33%), Postives = 26/42 (61.90%), Query Frame = -3
Query:  440 DDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKV 565
            D+    A    ++++++ HP  IG GYAPV+  HT+ + V++
Sbjct:  326 DNVPTVAEEIVARIVVLWHPTAIGPGYAPVMHIHTATVPVQI 367          
BLAST of CB305012 vs. ExPASy Swiss-Prot
Match: EF1A_METKA (Elongation factor 1-alpha OS=Methanopyrus kandleri GN=tuf PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 8.260e-23
Identity = 40/75 (53.33%), Postives = 54/75 (72.00%), Query Frame = -1
Query:  220 KFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKKD 444
            KF EL+ KID  +G+ +E+ P FLK G+A  V++ PTKPMV+E  S  P LGRFA+RDM QTVA G+   +EK++
Sbjct:  349 KFEELIEKIDPATGEVIEENPDFLKTGEAAKVRIRPTKPMVIEEVSFIPQLGRFAIRDMGQTVAAGMCVKIEKEE 423          

HSP 2 Score: 41.2022 bits (95), Expect = 8.260e-23
Identity = 17/44 (38.64%), Postives = 25/44 (56.82%), Query Frame = -3
Query:  443 DDPAREAA---NFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVK 565
            D+PA        F +Q++++ HP  I  GY PV  CHT+ +A K
Sbjct:  306 DEPATVVTPDDTFIAQIVVLQHPSAITAGYTPVFHCHTAQVACK 349          
BLAST of CB305012 vs. ExPASy Swiss-Prot
Match: EF1A_SULAC (Elongation factor 1-alpha OS=Sulfolobus acidocaldarius GN=tuf PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.074e-22
Identity = 37/78 (47.44%), Postives = 57/78 (73.08%), Query Frame = -1
Query:  223 TLPSKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKK 456
            ++  + SE+ ++ID ++GKE EK P+F+K GD+ +VK  P K +V E F ++P LGRFA+RDM +TV VGVI +V+ +
Sbjct:  353 SIACRVSEITSRIDPKTGKEAEKNPQFIKAGDSAIVKFKPIKELVAEKFREFPALGRFAMRDMGKTVGVGVIIDVKPR 430          

HSP 2 Score: 44.669 bits (104), Expect = 1.074e-22
Identity = 21/46 (45.65%), Postives = 29/46 (63.04%), Query Frame = -3
Query:  440 SNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKV 577
            + S  +P   A  FT+QVI++ HP  +G GY PVL  HT+ IA +V
Sbjct:  313 AGSVQNPPTVADEFTAQVIVIWHPTAVGVGYTPVLHVHTASIACRV 358          
BLAST of CB305012 vs. ExPASy Swiss-Prot
Match: EF1A_PYRCJ (Elongation factor 1-alpha OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=tuf PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.397e-22
Identity = 40/76 (52.63%), Postives = 59/76 (77.63%), Query Frame = -1
Query:  229 TLPSKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVE 456
            T+P +  ELV+K+D R+G+ +E++P+F+K GD  +VK+ P KP+V E FSD+PPLGRFA+RDM +T+A G I  V+
Sbjct:  362 TVPVQIVELVSKLDPRTGQAVEQKPQFIKQGDVAIVKIKPLKPVVAEKFSDFPPLGRFALRDMGRTIAAGQILEVK 437          

HSP 2 Score: 36.1946 bits (82), Expect = 1.397e-22
Identity = 13/36 (36.11%), Postives = 24/36 (66.67%), Query Frame = -3
Query:  440 AANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKV 547
            A    ++++++ HP  IG GYAPV+  HT+ + V++
Sbjct:  332 AEEIVARIVVLWHPTAIGPGYAPVMHIHTATVPVQI 367          
BLAST of CB305012 vs. ExPASy Swiss-Prot
Match: EF1A_STAMF (Elongation factor 1-alpha OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=tuf PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.398e-22
Identity = 37/76 (48.68%), Postives = 59/76 (77.63%), Query Frame = -1
Query:  229 TLPSKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVE 456
            ++ S+  E+  K+D R+GK +E+ P+F+K GDA +V+  P KP+VVE +SD+PPLGRFA+RDM +T+ +GV+ +V+
Sbjct:  354 SVASRIVEIKAKLDPRTGKVVEENPQFIKMGDAAIVRFKPIKPLVVEKYSDFPPLGRFAMRDMGKTIGIGVVVDVK 429          

HSP 2 Score: 38.891 bits (89), Expect = 1.398e-22
Identity = 17/42 (40.48%), Postives = 26/42 (61.90%), Query Frame = -3
Query:  440 DDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKV 565
            D+P   A  FT++V I+ HP  I  GY PV+  HT+ +A ++
Sbjct:  318 DNPPTVAEEFTARVFIIWHPTAITVGYTPVIHIHTASVASRI 359          
BLAST of CB305012 vs. ExPASy Swiss-Prot
Match: EF1A_PYRAR (Elongation factor 1-alpha OS=Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321) GN=tuf PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.818e-22
Identity = 39/76 (51.32%), Postives = 60/76 (78.95%), Query Frame = -1
Query:  229 TLPSKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVE 456
            T+P + +EL++K+D R+G+ +E++P+F+K GD  +VK+ P KP+V E FSD+PPLGRFA+RDM +T+A G I  V+
Sbjct:  362 TVPVQITELISKLDPRTGQAVEQKPQFIKQGDVAIVKIKPLKPVVAEKFSDFPPLGRFALRDMGRTIAAGQILEVK 437          

HSP 2 Score: 35.039 bits (79), Expect = 1.818e-22
Identity = 12/31 (38.71%), Postives = 23/31 (74.19%), Query Frame = -3
Query:  440 SQVIIMNHPGQIGNGYAPVLDCHTSHIAVKV 532
            ++++++ HP  IG GYAPV+  HT+ + V++
Sbjct:  337 ARIVVLWHPTAIGPGYAPVMHIHTATVPVQI 367          
BLAST of CB305012 vs. ExPASy Swiss-Prot
Match: EF1A_HYPBU (Elongation factor 1-alpha OS=Hyperthermus butylicus (strain DSM 5456 / JCM 9403) GN=tuf PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 2.366e-22
Identity = 35/76 (46.05%), Postives = 59/76 (77.63%), Query Frame = -1
Query:  229 TLPSKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVE 456
            ++ ++ +E+  K+D R+G+ +EK P+FLK GDA +VK  P KPMV+E +S++P LGRFA+RDM +T+ +G++ +V+
Sbjct:  355 SIAARITEIQAKLDPRTGQVIEKNPQFLKAGDAAIVKFKPIKPMVIEKYSEFPQLGRFAMRDMGKTIGIGIVVDVK 430          

HSP 2 Score: 39.6614 bits (91), Expect = 2.366e-22
Identity = 16/42 (38.10%), Postives = 25/42 (59.52%), Query Frame = -3
Query:  440 DDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKV 565
            D P   A  FT+++ ++ HP  I  GY PV+  HT+ IA ++
Sbjct:  319 DKPPTVAEEFTARIFVIWHPSAITVGYTPVIHAHTASIAARI 360          
BLAST of CB305012 vs. ExPASy Swiss-Prot
Match: EF1A_METJA (Elongation factor 1-alpha OS=Methanocaldococcus jannaschii GN=tuf PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 2.367e-22
Identity = 38/74 (51.35%), Postives = 55/74 (74.32%), Query Frame = -1
Query:  220 FSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKKD 441
            F EL+ K+D R+G+ +E+ P+FLK GDA +VK+ PTKPMV+E   + P LGRFA+RDM  T+A G+  +V+ K+
Sbjct:  354 FIELLKKLDPRTGQVIEENPQFLKTGDAAIVKIKPTKPMVIENVREIPQLGRFAIRDMGMTIAAGMAIDVKAKN 427          

HSP 2 Score: 41.5874 bits (96), Expect = 2.367e-22
Identity = 16/39 (41.03%), Postives = 24/39 (61.54%), Query Frame = -3
Query:  449 DDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIA 565
            D+P   A  FT+Q++++ HP  I  GY PV   HT+ +A
Sbjct:  313 DNPPTVAEEFTAQIVVLQHPTAITVGYTPVFHAHTAQVA 351          
The following BLAST results are available for this feature:
BLAST of CB305012 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 158
Match NameE-valueIdentityDescription
EF1A_METS51.005e-2352.63Elongation factor 1-alpha OS=Metallosphaera sedula... [more]
EF1A_SULTO2.880e-2355.41Elongation factor 1-alpha OS=Sulfolobus tokodaii G... [more]
EF1A_PYRAE4.875e-2352.63Elongation factor 1-alpha OS=Pyrobaculum aerophilu... [more]
EF1A_METKA8.260e-2353.33Elongation factor 1-alpha OS=Methanopyrus kandleri... [more]
EF1A_SULAC1.074e-2247.44Elongation factor 1-alpha OS=Sulfolobus acidocalda... [more]
EF1A_PYRCJ1.397e-2252.63Elongation factor 1-alpha OS=Pyrobaculum calidifon... [more]
EF1A_STAMF1.398e-2248.68Elongation factor 1-alpha OS=Staphylothermus marin... [more]
EF1A_PYRAR1.818e-2251.32Elongation factor 1-alpha OS=Pyrobaculum arsenatic... [more]
EF1A_HYPBU2.366e-2246.05Elongation factor 1-alpha OS=Hyperthermus butylicu... [more]
EF1A_METJA2.367e-2251.35Elongation factor 1-alpha OS=Methanocaldococcus ja... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0003_IIaR_G01 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IIaR_G01 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB305012 ID=CB305012; Name=CB305012; organism=Citrus sinensis; type=EST; length=579bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTACCAACTTACCAAAAAAAAAC
TCTGATATAAAACCAAATTCAGAGAATTAAAATGAAGTCCCGTAAAACAA
ACTAAAACACGACAAAAATAGCATAAACAGAGAAAATAAAAGCTAACTAT
AGCAGATAGATCCCAAAAAACTCCTCACTTCTTCTTGGCTGCAGACTTGG
TGACCTTGGCACCTGTTGGATCCTTCTTTTCAACATTCTTAATCACACCA
ACAGCAACAGTCTGACGCATGTCCCTAACGGCAAAACGACCAAGAGGTGG
GTAGTCAGAGAAGGTTTCAACAACCATGGGCTTGGTGGGAATCATCTTAA
CCATTCCAGCATCTCCATTCTTCAAGAACTTGGGCTCCTTCTCAAGCTCC
TTGCCTGATCGCCTATCAATCTTCGTCACGAGCTCAGAAAACTTTGACGG
CAATGTGGGAGGTGTGGCAGTCAAGCACTGGGGCATATCCATTTCCAATC
TGGCCAGGGTGGTTCATGATGATGACCTGTGAGGTGAAGTTGGCAGCTTC
CCTGGCTGGATCATCCTTCGAGTTGGAAG
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