CB305012

Overview
NameCB305012
Unique NameCB305012
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length579
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2325 contig Csv1_Contig2325:131..710. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB305012 vs. ExPASy Swiss-Prot
Match: EF1A_DESMO (Elongation factor 1-alpha OS=Desulfurococcus mobilis GN=tuf PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 4.005e-22
Identity = 36/72 (50.00%), Postives = 53/72 (73.61%), Query Frame = -1
Query:  229 KFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVE 444
            + +E++ KID R+GKE+EK P FLK GD  +VK  P KP+VVE +SD+  LGRFA+RDM +T+ +G +  ++
Sbjct:  359 RITEIIAKIDPRTGKEIEKNPHFLKQGDIAIVKFKPIKPLVVEKYSDFQGLGRFAMRDMGKTIGIGQVLEIK 430          

HSP 2 Score: 40.4318 bits (93), Expect = 4.005e-22
Identity = 17/46 (36.96%), Postives = 28/46 (60.87%), Query Frame = -3
Query:  440 SNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKV 577
            + S D P   A  FT+++++M HP  I  GY PV+  HT+ +A ++
Sbjct:  315 AGSLDVPPTVADEFTARIMVMWHPTAIAVGYTPVIHVHTASVACRI 360          
BLAST of CB305012 vs. ExPASy Swiss-Prot
Match: EF1A_THEPD (Elongation factor 1-alpha OS=Thermofilum pendens (strain Hrk 5) GN=tuf PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 4.005e-22
Identity = 37/79 (46.84%), Postives = 60/79 (75.95%), Query Frame = -1
Query:  220 TLPSKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKKD 456
            T+P  F EL+ K+D R+G   E++P+++K GD+ +V+  P KP+VVE +S++PPLGRFA+RD  +T+A GV+ +V+K +
Sbjct:  353 TVPVTFEELLQKLDPRTGSVAEEKPQYIKQGDSAIVRFKPRKPVVVEKYSEFPPLGRFAIRDSGRTIAAGVVIDVKKAE 431          

HSP 2 Score: 36.5798 bits (83), Expect = 4.005e-22
Identity = 15/39 (38.46%), Postives = 22/39 (56.41%), Query Frame = -3
Query:  446 DPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAV 562
            +P   A  FT ++ ++ HP  I  GY PVL  HT+ + V
Sbjct:  318 NPPTVAEEFTGRIFVLYHPTAIAAGYTPVLHIHTATVPV 356          
BLAST of CB305012 vs. ExPASy Swiss-Prot
Match: EF1A_THESM (Elongation factor 1-alpha OS=Thermococcus sibiricus (strain MM 739 / DSM 12597) GN=tuf PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 4.006e-22
Identity = 35/73 (47.95%), Postives = 55/73 (75.34%), Query Frame = -1
Query:  226 KFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEK 444
            +F +L+ K+D R+G  +E+ P+F+K GD+ +V + PTKPMV+E   + P LGRFA+RDM QTVA G++ +++K
Sbjct:  354 RFEQLLAKLDPRTGNVVEENPQFIKTGDSAIVVLRPTKPMVIEPVKELPQLGRFAIRDMGQTVAAGMVISIQK 426          

HSP 2 Score: 41.2022 bits (95), Expect = 4.006e-22
Identity = 17/37 (45.95%), Postives = 24/37 (64.86%), Query Frame = -3
Query:  443 REAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVK 553
            R    F +Q+I++NHP  I  GY PVL  HT+ +AV+
Sbjct:  318 RPRDTFKAQIIVLNHPTAITIGYTPVLHAHTTQVAVR 354          
BLAST of CB305012 vs. ExPASy Swiss-Prot
Match: EF1A_THEON (Elongation factor 1-alpha OS=Thermococcus onnurineus (strain NA1) GN=tuf PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 5.212e-22
Identity = 34/75 (45.33%), Postives = 56/75 (74.67%), Query Frame = -1
Query:  220 KFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKKD 444
            +F +L+ K+D R+G  +E+ P+F+K GD+ +V + PTKPMV+E   + P +GRFA+RDM QTVA G++ +++K +
Sbjct:  354 RFEQLLAKLDPRTGNVVEENPQFIKTGDSAIVVLRPTKPMVIEPVKEIPQMGRFAIRDMGQTVAAGMVISIQKAE 428          

HSP 2 Score: 41.2022 bits (95), Expect = 5.212e-22
Identity = 18/45 (40.00%), Postives = 26/45 (57.78%), Query Frame = -3
Query:  443 SNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVK 577
            +N+     R    F +Q+I++NHP  I  GY PVL  HT  +AV+
Sbjct:  310 TNNPPTVVRPKDTFKAQIIVLNHPTAITIGYTPVLHAHTLQVAVR 354          
BLAST of CB305012 vs. ExPASy Swiss-Prot
Match: EF1A_THECE (Elongation factor 1-alpha OS=Thermococcus celer GN=tuf PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 6.780e-22
Identity = 34/75 (45.33%), Postives = 56/75 (74.67%), Query Frame = -1
Query:  220 KFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKKD 444
            +F +L+ K+D R+G  +E+ P+F+K GD+ +V + PTKPMV+E   + P +GRFA+RDM QTVA G++ +++K +
Sbjct:  354 RFEQLLAKLDPRTGNIVEENPQFIKTGDSAIVVLRPTKPMVIEPVKEIPQMGRFAIRDMGQTVAAGMVISIQKAE 428          

HSP 2 Score: 41.2022 bits (95), Expect = 6.780e-22
Identity = 18/45 (40.00%), Postives = 26/45 (57.78%), Query Frame = -3
Query:  443 SNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVK 577
            +N+     R    F +Q+I++NHP  I  GY PVL  HT  +AV+
Sbjct:  310 TNNPPTVVRPKDTFKAQIIVLNHPTAITVGYTPVLHAHTLQVAVR 354          
BLAST of CB305012 vs. ExPASy Swiss-Prot
Match: EF1A_METLZ (Elongation factor 1-alpha OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=tuf PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 6.781e-22
Identity = 38/73 (52.05%), Postives = 52/73 (71.23%), Query Frame = -1
Query:  223 FSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKK 441
            F+EL  K+D RSG+  E+ P FLK GDA +  + PT+P+V+ET  + P LGRFAVRDM  TVA G++ +V+ K
Sbjct:  350 FTELNKKLDPRSGQVKEENPAFLKAGDAAICTITPTRPLVIETAKELPQLGRFAVRDMGMTVAAGLVLSVKAK 422          

HSP 2 Score: 43.8986 bits (102), Expect = 6.781e-22
Identity = 17/39 (43.59%), Postives = 24/39 (61.54%), Query Frame = -3
Query:  449 DDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIA 565
            ++P   A  FT+QV+++ HP  +  GY PV  CHTS  A
Sbjct:  309 ENPPTVAEEFTAQVVVLQHPSVLSVGYTPVFHCHTSQTA 347          
BLAST of CB305012 vs. ExPASy Swiss-Prot
Match: EF1A_METTP (Elongation factor 1-alpha OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=tuf PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 6.782e-22
Identity = 33/69 (47.83%), Postives = 48/69 (69.57%), Query Frame = -1
Query:  232 SELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNV 438
            +E+  K+D R+G   E+ P F+K GDA ++ + PTKPMV+E   + P LGRFA+RDM  T+A G+ +NV
Sbjct:  353 TEIKAKLDPRTGSVKEQNPAFIKTGDAAIISVRPTKPMVIEKVKEIPQLGRFAIRDMGMTIAAGMCQNV 421          

HSP 2 Score: 47.3654 bits (111), Expect = 6.782e-22
Identity = 17/42 (40.48%), Postives = 26/42 (61.90%), Query Frame = -3
Query:  440 DDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKV 565
            D+P   A  FT+Q++++ HP  I  GY PV  CHT+ +A  +
Sbjct:  311 DNPPTVAKEFTAQIVVLQHPSAISAGYTPVFHCHTAQVACTI 352          
BLAST of CB305012 vs. ExPASy Swiss-Prot
Match: EF1A_METTH (Elongation factor 1-alpha OS=Methanobacterium thermoautotrophicum GN=tuf PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.784e-22
Identity = 35/66 (53.03%), Postives = 48/66 (72.73%), Query Frame = -1
Query:  244 FSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGV 441
            F ELV K++  +G+  E+ P FLK G+A +VK+ PTKP+V+E   D P +GRFA+RDM QTVA G+
Sbjct:  340 FLELVQKMNPATGQVEEENPDFLKTGNAAVVKVKPTKPLVIEKIKDIPHMGRFAIRDMGQTVAAGM 405          

HSP 2 Score: 48.9062 bits (115), Expect = 6.784e-22
Identity = 18/39 (46.15%), Postives = 27/39 (69.23%), Query Frame = -3
Query:  449 DDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIA 565
            D+P + A  FT+Q++++ HPG I  GY PV  CHT+ +A
Sbjct:  299 DNPPKVAKEFTAQIVVLQHPGVITVGYTPVFHCHTAQVA 337          
BLAST of CB305012 vs. ExPASy Swiss-Prot
Match: EF1A_ARCFU (Elongation factor 1-alpha OS=Archaeoglobus fulgidus GN=tuf PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 8.823e-22
Identity = 36/68 (52.94%), Postives = 50/68 (73.53%), Query Frame = -1
Query:  241 KFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVI 444
            +F EL  KID R+G+  E+ P+FLK GDA +VK+ PT+PMV+E   D PP+GRFA+RDM  T+  G++
Sbjct:  349 RFVELQKKIDPRTGQVKEENPQFLKTGDAAIVKLEPTRPMVIERVKDIPPMGRFAIRDMGMTIGAGMV 416          

HSP 2 Score: 40.817 bits (94), Expect = 8.823e-22
Identity = 16/41 (39.02%), Postives = 26/41 (63.41%), Query Frame = -3
Query:  443 DDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVK 565
            D+P     +FT+Q++++ HP  I  GY PV+  HT+ IA +
Sbjct:  309 DNPPTVVKDFTAQLVVLQHPTAITVGYTPVVHAHTAQIACR 349          
BLAST of CB305012 vs. ExPASy Swiss-Prot
Match: EF1A_METMJ (Elongation factor 1-alpha OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=tuf PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.148e-21
Identity = 38/73 (52.05%), Postives = 51/73 (69.86%), Query Frame = -1
Query:  223 FSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKK 441
            F EL+ K+D R+G+  E+ P FLK GDA +VK+ PT+PMV+E   + P LGRFAVRDM  T+A GV  ++  K
Sbjct:  350 FVELMKKLDPRTGQVKEENPTFLKTGDAAIVKIRPTQPMVIEKVKEIPQLGRFAVRDMGSTIAAGVCMDITPK 422          

HSP 2 Score: 42.3578 bits (98), Expect = 1.148e-21
Identity = 17/39 (43.59%), Postives = 24/39 (61.54%), Query Frame = -3
Query:  449 DDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIA 565
            D P   A  F +QV++++HP  +  GY PV  CHT+ IA
Sbjct:  309 DVPPTVAEEFIAQVVVLHHPSALTVGYTPVFHCHTAQIA 347          
The following BLAST results are available for this feature:
BLAST of CB305012 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 158
Match NameE-valueIdentityDescription
EF1A_DESMO4.005e-2250.00Elongation factor 1-alpha OS=Desulfurococcus mobil... [more]
EF1A_THEPD4.005e-2246.84Elongation factor 1-alpha OS=Thermofilum pendens (... [more]
EF1A_THESM4.006e-2247.95Elongation factor 1-alpha OS=Thermococcus sibiricu... [more]
EF1A_THEON5.212e-2245.33Elongation factor 1-alpha OS=Thermococcus onnurine... [more]
EF1A_THECE6.780e-2245.33Elongation factor 1-alpha OS=Thermococcus celer GN... [more]
EF1A_METLZ6.781e-2252.05Elongation factor 1-alpha OS=Methanocorpusculum la... [more]
EF1A_METTP6.782e-2247.83Elongation factor 1-alpha OS=Methanosaeta thermoph... [more]
EF1A_METTH6.784e-2253.03Elongation factor 1-alpha OS=Methanobacterium ther... [more]
EF1A_ARCFU8.823e-2252.94Elongation factor 1-alpha OS=Archaeoglobus fulgidu... [more]
EF1A_METMJ1.148e-2152.05Elongation factor 1-alpha OS=Methanoculleus marisn... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0003_IIaR_G01 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IIaR_G01 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB305012 ID=CB305012; Name=CB305012; organism=Citrus sinensis; type=EST; length=579bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTACCAACTTACCAAAAAAAAAC
TCTGATATAAAACCAAATTCAGAGAATTAAAATGAAGTCCCGTAAAACAA
ACTAAAACACGACAAAAATAGCATAAACAGAGAAAATAAAAGCTAACTAT
AGCAGATAGATCCCAAAAAACTCCTCACTTCTTCTTGGCTGCAGACTTGG
TGACCTTGGCACCTGTTGGATCCTTCTTTTCAACATTCTTAATCACACCA
ACAGCAACAGTCTGACGCATGTCCCTAACGGCAAAACGACCAAGAGGTGG
GTAGTCAGAGAAGGTTTCAACAACCATGGGCTTGGTGGGAATCATCTTAA
CCATTCCAGCATCTCCATTCTTCAAGAACTTGGGCTCCTTCTCAAGCTCC
TTGCCTGATCGCCTATCAATCTTCGTCACGAGCTCAGAAAACTTTGACGG
CAATGTGGGAGGTGTGGCAGTCAAGCACTGGGGCATATCCATTTCCAATC
TGGCCAGGGTGGTTCATGATGATGACCTGTGAGGTGAAGTTGGCAGCTTC
CCTGGCTGGATCATCCTTCGAGTTGGAAG
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