CB305012

Overview
NameCB305012
Unique NameCB305012
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length579
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2325 contig Csv1_Contig2325:131..710. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB305012 vs. ExPASy Swiss-Prot
Match: EF1A_THEAC (Elongation factor 1-alpha OS=Thermoplasma acidophilum GN=tuf PE=3 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 1.148e-21
Identity = 36/74 (48.65%), Postives = 53/74 (71.62%), Query Frame = -1
Query:  223 KFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKK 444
            +  E+V  ++ + G  L+++P F+KNGD  +VK+IP KP+V+E  S+ P LGRFAVRDM QTVA G   ++EK+
Sbjct:  351 RIDEIVKTLNPKDGTTLKEKPDFIKNGDVAIVKVIPDKPLVIEKVSEIPQLGRFAVRDMGQTVAAGQCIDLEKR 424          

HSP 2 Score: 43.5134 bits (101), Expect = 1.148e-21
Identity = 17/42 (40.48%), Postives = 25/42 (59.52%), Query Frame = -3
Query:  440 DDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKV 565
            D P      FT+Q+I++NHP  I  GY PV   HT+ +A ++
Sbjct:  311 DTPPTVVKAFTAQIIVLNHPSVIAPGYKPVFHVHTAQVACRI 352          
BLAST of CB305012 vs. ExPASy Swiss-Prot
Match: EF1A_PYRIL (Elongation factor 1-alpha OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=tuf PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 1.941e-21
Identity = 38/76 (50.00%), Postives = 58/76 (76.32%), Query Frame = -1
Query:  229 TLPSKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVE 456
            T+P +  ELV+K+D R+G+ +E++P+F+K GD  +VK+ P KP+V E FS++P LGRFA+RDM +T+A G I  V+
Sbjct:  362 TVPVQIVELVSKLDPRTGQAVEQKPQFIKQGDVAIVKIKPLKPVVAEKFSEFPALGRFALRDMGRTIAAGQIIEVK 437          

HSP 2 Score: 37.3502 bits (85), Expect = 1.941e-21
Identity = 16/42 (38.10%), Postives = 26/42 (61.90%), Query Frame = -3
Query:  440 DDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKV 565
            D+    A    ++V+I+ HP  IG GYAPV+  HT+ + V++
Sbjct:  326 DNVPTVAEEIVARVVILWHPTAIGPGYAPVMHIHTATVPVQI 367          
BLAST of CB305012 vs. ExPASy Swiss-Prot
Match: EF1A_METVA (Elongation factor 1-alpha OS=Methanococcus vannielii GN=tuf PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.942e-21
Identity = 38/74 (51.35%), Postives = 53/74 (71.62%), Query Frame = -1
Query:  220 FSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKKD 441
            F+E+  K++  +G+ LE+ P FLK GDA +VK+IPTKPMV+E+  + P LGRFA+RDM  TVA G+   V  K+
Sbjct:  354 FAEIQKKLNPATGEVLEENPDFLKAGDAAIVKLIPTKPMVIESVKEIPQLGRFAIRDMGMTVAAGMAIQVTAKN 427          

HSP 2 Score: 41.2022 bits (95), Expect = 1.942e-21
Identity = 15/38 (39.47%), Postives = 25/38 (65.79%), Query Frame = -3
Query:  449 DPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIA 562
            +P   A +FT+Q++++ HP  + +GY PV   HT+ IA
Sbjct:  314 NPPTVATDFTAQIVVLQHPSVLTDGYTPVFHTHTAQIA 351          
BLAST of CB305012 vs. ExPASy Swiss-Prot
Match: EF1A_PYRKO (Elongation factor 1-alpha OS=Pyrococcus kodakaraensis GN=tuf PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 2.526e-21
Identity = 34/75 (45.33%), Postives = 55/75 (73.33%), Query Frame = -1
Query:  220 KFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKKD 444
            +F +L+ K+D R+G  +E+ P+F+K GD+ +V + PTK MV+E   + P +GRFA+RDM QTVA G++ +++K D
Sbjct:  354 RFEQLLAKLDPRTGNIVEENPQFIKTGDSAIVILRPTKAMVIEPVKEIPQMGRFAIRDMGQTVAAGMVISIQKAD 428          

HSP 2 Score: 41.2022 bits (95), Expect = 2.526e-21
Identity = 17/37 (45.95%), Postives = 24/37 (64.86%), Query Frame = -3
Query:  443 REAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVK 553
            R    F +Q+I++NHP  I  GY PVL  HT+ +AV+
Sbjct:  318 RPKDTFKAQIIVLNHPTAITVGYTPVLHAHTTQVAVR 354          
BLAST of CB305012 vs. ExPASy Swiss-Prot
Match: EF1A_METB6 (Elongation factor 1-alpha OS=Methanoregula boonei (strain 6A8) GN=tuf PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.527e-21
Identity = 38/73 (52.05%), Postives = 50/73 (68.49%), Query Frame = -1
Query:  223 FSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKK 441
            F EL  K+D RSG+  E+ P FLK GDA +V++ PTKPMV+E   + P LGRFAVRDM  T+A G+   ++ K
Sbjct:  350 FIELKKKLDPRSGQTKEENPTFLKTGDAAIVQIKPTKPMVIENVKELPQLGRFAVRDMGSTIAAGMCIAIQPK 422          

HSP 2 Score: 42.3578 bits (98), Expect = 2.527e-21
Identity = 17/39 (43.59%), Postives = 23/39 (58.97%), Query Frame = -3
Query:  449 DDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIA 565
            + P   A  FT+QV+++ HP  I  GY PV  CHT+  A
Sbjct:  309 EQPPTVADEFTAQVVVLQHPSAITVGYTPVFHCHTTQTA 347          
BLAST of CB305012 vs. ExPASy Swiss-Prot
Match: EF1A_THEVO (Elongation factor 1-alpha OS=Thermoplasma volcanium GN=tuf PE=3 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 2.527e-21
Identity = 36/74 (48.65%), Postives = 51/74 (68.92%), Query Frame = -1
Query:  223 KFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKK 444
            K  E+V  ++ + G  L+ +P F+K GD  +VK+IP KP+V+E  S+ P LGRFAVRDM QTVA G   ++EK+
Sbjct:  351 KIDEIVRTLNPKDGTTLKDKPDFIKTGDIAIVKVIPDKPLVIEKVSEIPQLGRFAVRDMGQTVAAGQCIDLEKR 424          

HSP 2 Score: 44.669 bits (104), Expect = 2.527e-21
Identity = 17/42 (40.48%), Postives = 25/42 (59.52%), Query Frame = -3
Query:  440 DDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKV 565
            D P      FT+Q++++NHP  I  GY PV   HT+ +A K+
Sbjct:  311 DSPPTVVRAFTAQIVVLNHPSVIAPGYKPVFHVHTAQVACKI 352          
BLAST of CB305012 vs. ExPASy Swiss-Prot
Match: EF1A_IGNH4 (Elongation factor 1-alpha OS=Ignicoccus hospitalis (strain KIN4/I / DSM 18386 / JCM 14125) GN=tuf PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.285e-21
Identity = 37/76 (48.68%), Postives = 55/76 (72.37%), Query Frame = -1
Query:  229 TLPSKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVE 456
            ++ S+  E+  KID R+GK +E+ P FLK GDA +V   P KPMV+E F ++ PLGRFA+RDM +TV +G++ +V+
Sbjct:  357 SVASRIIEIKQKIDPRTGKVIEENPSFLKPGDAAVVVFKPLKPMVIEKFQEFQPLGRFAMRDMGKTVGIGIVTDVK 432          

HSP 2 Score: 38.5058 bits (88), Expect = 3.285e-21
Identity = 15/42 (35.71%), Postives = 26/42 (61.90%), Query Frame = -3
Query:  440 DDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKV 565
            ++P   A  FT++V ++ HP  I  GY PV+  HT+ +A ++
Sbjct:  321 ENPPTVADQFTARVFVIWHPSAIAVGYTPVIHAHTASVASRI 362          
BLAST of CB305012 vs. ExPASy Swiss-Prot
Match: EF1A_METPE (Elongation factor 1-alpha OS=Methanosphaerula palustris (strain ATCC BAA-1556 / DSM 19958 / E1-9c) GN=tuf PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 4.276e-21
Identity = 36/73 (49.32%), Postives = 52/73 (71.23%), Query Frame = -1
Query:  223 FSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKK 441
            F EL  K+D RSG+  E+ P FLK+GDA +V++ P++PMV+E+  + P LGRFA+RDM  T+A G+   V+ K
Sbjct:  350 FVELRKKLDPRSGQTKEENPTFLKSGDAAIVQIKPSRPMVIESVKEIPQLGRFAIRDMGTTIAAGMCIAVQPK 422          

HSP 2 Score: 44.2838 bits (103), Expect = 4.276e-21
Identity = 18/39 (46.15%), Postives = 24/39 (61.54%), Query Frame = -3
Query:  449 DDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIA 565
            D P   A  FT+Q++++ HP  I  GY PV  CHT+ IA
Sbjct:  309 DIPPTVADEFTAQIVVLQHPSAITVGYTPVFHCHTAQIA 347          
BLAST of CB305012 vs. ExPASy Swiss-Prot
Match: EF1A_METVS (Elongation factor 1-alpha OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=tuf PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 5.561e-21
Identity = 38/74 (51.35%), Postives = 53/74 (71.62%), Query Frame = -1
Query:  220 FSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKKD 441
            F+E+  K++  +G+ LE+ P FLK GDA +VK+IPTKPMV+E+  + P LGRFA+RDM  TVA G+   V  K+
Sbjct:  354 FAEIQKKLNPATGEVLEENPDFLKAGDAAIVKLIPTKPMVIESVKEIPQLGRFAIRDMGMTVAAGMAIQVTAKN 427          

HSP 2 Score: 39.6614 bits (91), Expect = 5.561e-21
Identity = 15/38 (39.47%), Postives = 24/38 (63.16%), Query Frame = -3
Query:  449 DPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIA 562
            +P   A +FT+Q++++ HP  +  GY PV   HT+ IA
Sbjct:  314 NPPTVATDFTAQIVVLQHPSVLTVGYTPVFHTHTAQIA 351          
BLAST of CB305012 vs. ExPASy Swiss-Prot
Match: EF1A_METS3 (Elongation factor 1-alpha OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=tuf PE=3 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 5.565e-21
Identity = 36/70 (51.43%), Postives = 47/70 (67.14%), Query Frame = -1
Query:  232 FSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNV 441
            F EL  K+D  +G+  E+ P FLK G+A  VK+ PTKPMV+E     P +GRFA+RDM QTVA G+  +V
Sbjct:  340 FLELTAKLDPATGQVAEENPDFLKTGNAAFVKVKPTKPMVIENAKKIPQMGRFAIRDMGQTVAAGLCIDV 409          

HSP 2 Score: 45.4394 bits (106), Expect = 5.565e-21
Identity = 18/39 (46.15%), Postives = 24/39 (61.54%), Query Frame = -3
Query:  449 DDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIA 565
            DD    A  F +Q++++ HPG I  GY PV  CHTS +A
Sbjct:  299 DDAPAVAKEFDAQIVVLQHPGVITVGYTPVFHCHTSQVA 337          
The following BLAST results are available for this feature:
BLAST of CB305012 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 158
Match NameE-valueIdentityDescription
EF1A_THEAC1.148e-2148.65Elongation factor 1-alpha OS=Thermoplasma acidophi... [more]
EF1A_PYRIL1.941e-2150.00Elongation factor 1-alpha OS=Pyrobaculum islandicu... [more]
EF1A_METVA1.942e-2151.35Elongation factor 1-alpha OS=Methanococcus vanniel... [more]
EF1A_PYRKO2.526e-2145.33Elongation factor 1-alpha OS=Pyrococcus kodakaraen... [more]
EF1A_METB62.527e-2152.05Elongation factor 1-alpha OS=Methanoregula boonei ... [more]
EF1A_THEVO2.527e-2148.65Elongation factor 1-alpha OS=Thermoplasma volcaniu... [more]
EF1A_IGNH43.285e-2148.68Elongation factor 1-alpha OS=Ignicoccus hospitalis... [more]
EF1A_METPE4.276e-2149.32Elongation factor 1-alpha OS=Methanosphaerula palu... [more]
EF1A_METVS5.561e-2151.35Elongation factor 1-alpha OS=Methanococcus vanniel... [more]
EF1A_METS35.565e-2151.43Elongation factor 1-alpha OS=Methanobrevibacter sm... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0003_IIaR_G01 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IIaR_G01 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB305012 ID=CB305012; Name=CB305012; organism=Citrus sinensis; type=EST; length=579bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTACCAACTTACCAAAAAAAAAC
TCTGATATAAAACCAAATTCAGAGAATTAAAATGAAGTCCCGTAAAACAA
ACTAAAACACGACAAAAATAGCATAAACAGAGAAAATAAAAGCTAACTAT
AGCAGATAGATCCCAAAAAACTCCTCACTTCTTCTTGGCTGCAGACTTGG
TGACCTTGGCACCTGTTGGATCCTTCTTTTCAACATTCTTAATCACACCA
ACAGCAACAGTCTGACGCATGTCCCTAACGGCAAAACGACCAAGAGGTGG
GTAGTCAGAGAAGGTTTCAACAACCATGGGCTTGGTGGGAATCATCTTAA
CCATTCCAGCATCTCCATTCTTCAAGAACTTGGGCTCCTTCTCAAGCTCC
TTGCCTGATCGCCTATCAATCTTCGTCACGAGCTCAGAAAACTTTGACGG
CAATGTGGGAGGTGTGGCAGTCAAGCACTGGGGCATATCCATTTCCAATC
TGGCCAGGGTGGTTCATGATGATGACCTGTGAGGTGAAGTTGGCAGCTTC
CCTGGCTGGATCATCCTTCGAGTTGGAAG
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