CB305012

Overview
NameCB305012
Unique NameCB305012
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length579
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2325 contig Csv1_Contig2325:131..710. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB305012 vs. ExPASy Swiss-Prot
Match: EF1A_METAC (Elongation factor 1-alpha OS=Methanosarcina acetivorans GN=tuf PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.696e-19
Identity = 32/67 (47.76%), Postives = 48/67 (71.64%), Query Frame = -1
Query:  223 KIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKK 423
            K+D ++G+  E+ P F+K GDA +V + PTKPMV+E   + P LGRFA+RDM  T+A G+  +V++K
Sbjct:  356 KLDPKTGQVKEEHPTFIKAGDAAIVTIKPTKPMVIEPVKEIPQLGRFAIRDMGMTIAAGMCMSVKQK 422          

HSP 2 Score: 43.1282 bits (100), Expect = 1.696e-19
Identity = 17/42 (40.48%), Postives = 25/42 (59.52%), Query Frame = -3
Query:  440 DDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKV 565
            D+P + A  F  Q++++ HP  I  GY PV   HTS IA ++
Sbjct:  309 DNPPKVADEFVGQIVVLQHPSAITAGYTPVFHAHTSQIACQL 350          
BLAST of CB305012 vs. ExPASy Swiss-Prot
Match: EF1A_META3 (Elongation factor 1-alpha OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=tuf PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 2.868e-19
Identity = 37/74 (50.00%), Postives = 52/74 (70.27%), Query Frame = -1
Query:  220 FSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKKD 441
            F EL  K++  +G+  E+ P FLK GDA +VK++PTKPMV+E   + P LGRFA+RDM  TVA G+  +V+ K+
Sbjct:  354 FMELQKKLNPATGEVKEENPDFLKAGDAAIVKIMPTKPMVIENVKEIPQLGRFAIRDMGMTVAAGMCIDVKAKN 427          

HSP 2 Score: 36.965 bits (84), Expect = 2.868e-19
Identity = 13/33 (39.39%), Postives = 21/33 (63.64%), Query Frame = -3
Query:  449 AANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIA 547
            A  FT+Q++++ HP  +  GY PV   HT+ +A
Sbjct:  319 AEEFTAQIVVLQHPSVMTVGYTPVFHAHTAQVA 351          
BLAST of CB305012 vs. ExPASy Swiss-Prot
Match: EF1A_NANEQ (Elongation factor 1-alpha OS=Nanoarchaeum equitans GN=tuf PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.729e-19
Identity = 34/77 (44.16%), Postives = 54/77 (70.13%), Query Frame = -1
Query:  223 LPSKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKK 453
            +P +F EL  K++  +G+ +E+ P+ L+ G+A +VK+ P KP+V+E F   P LGRFA+RDM +TVA+G+ + V  K
Sbjct:  351 VPVRFEELRGKVNPATGQVIEENPQALRPGEAAVVKLKPLKPVVIEPFDKIPQLGRFAIRDMGRTVAIGIARQVTPK 427          

HSP 2 Score: 38.1206 bits (87), Expect = 3.729e-19
Identity = 16/41 (39.02%), Postives = 24/41 (58.54%), Query Frame = -3
Query:  443 DDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVK 565
            D+P   A    + + ++ HP  I  GYAPVL  HT+H+ V+
Sbjct:  314 DNPPTVAEEIVALIHVIYHPSAITVGYAPVLHVHTAHVPVR 354          
BLAST of CB305012 vs. ExPASy Swiss-Prot
Match: EF1A_PICTO (Elongation factor 1-alpha OS=Picrophilus torridus GN=tuf PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 4.852e-19
Identity = 31/73 (42.47%), Postives = 50/73 (68.49%), Query Frame = -1
Query:  226 KFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEK 444
            +  E+V  I+ + G  L+++P F+K GD  +VK++P + +V+E  S++P LGRFA+RDM  TVA G   ++EK
Sbjct:  351 RIDEIVKTINPKDGTTLKEKPDFIKTGDIAIVKVVPDRALVIEKVSEFPQLGRFAIRDMGMTVAAGQCIDLEK 423          

HSP 2 Score: 42.743 bits (99), Expect = 4.852e-19
Identity = 15/42 (35.71%), Postives = 26/42 (61.90%), Query Frame = -3
Query:  440 DDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKV 565
            ++P      FT+Q++++NHP  I  GY PV   HT+ +A ++
Sbjct:  311 NNPPTVVKGFTAQIVVLNHPSVIAAGYKPVFHVHTAQVACRI 352          
BLAST of CB305012 vs. ExPASy Swiss-Prot
Match: EF1A_UNCMA (Elongation factor 1-alpha OS=Uncultured methanogenic archaeon RC-I GN=tuf PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 8.204e-19
Identity = 31/72 (43.06%), Postives = 50/72 (69.44%), Query Frame = -1
Query:  223 SELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKK 438
            ++++  +D ++G   E+ P F+K GDA +V + PT+P+V+E   + P LGRFA+RDM QTVA GV+ ++  K
Sbjct:  355 TQILATLDPKTGGVKEQNPPFIKTGDAAIVLIRPTRPLVIEKVKEIPQLGRFAIRDMGQTVAAGVVMDITPK 426          

HSP 2 Score: 40.817 bits (94), Expect = 8.204e-19
Identity = 15/33 (45.45%), Postives = 21/33 (63.64%), Query Frame = -3
Query:  449 AANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIA 547
            A  F +QV+++ HP  I  GY PV  CHT+ +A
Sbjct:  319 AVEFKAQVVVLQHPSAITAGYTPVFHCHTAQVA 351          
BLAST of CB305012 vs. ExPASy Swiss-Prot
Match: EF1A_METBU (Elongation factor 1-alpha OS=Methanococcoides burtonii (strain DSM 6242) GN=tuf PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.067e-18
Identity = 31/67 (46.27%), Postives = 47/67 (70.15%), Query Frame = -1
Query:  223 KIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKK 423
            K+D +SG+  E+ P ++K GDA +V + PT+PM +E  S+ P LGRFA+RDM  T+A G+  +V +K
Sbjct:  355 KLDPKSGQVKEENPTYIKAGDAAIVTIKPTRPMCIEPVSEIPQLGRFAIRDMGMTIAAGMCMSVTQK 421          

HSP 2 Score: 42.743 bits (99), Expect = 1.067e-18
Identity = 17/39 (43.59%), Postives = 22/39 (56.41%), Query Frame = -3
Query:  449 DDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIA 565
            D P   A  FT Q++++ HP  I  GY PV  CHT+  A
Sbjct:  308 DKPPSVADEFTGQIVVLQHPSAITVGYTPVFHCHTAQTA 346          
BLAST of CB305012 vs. ExPASy Swiss-Prot
Match: EF1A_HALMA (Elongation factor 1-alpha OS=Haloarcula marismortui GN=tuf PE=1 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 1.067e-18
Identity = 31/67 (46.27%), Postives = 45/67 (67.16%), Query Frame = -1
Query:  223 KIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKK 423
            KID  SG+  E+ P F++NGDA +V + P KP+ +E  S+ P LG FA+RDM QT+A G +  V ++
Sbjct:  355 KIDPSSGEVAEENPDFIQNGDAAVVTVRPQKPLSIEPSSEIPELGSFAIRDMGQTIAAGKVLGVNER 421          

HSP 2 Score: 44.669 bits (104), Expect = 1.067e-18
Identity = 18/42 (42.86%), Postives = 24/42 (57.14%), Query Frame = -3
Query:  440 DDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKV 565
            DDP   A  F +Q+++M HP  I  GY PV   HT+ +A  V
Sbjct:  308 DDPPSVAETFQAQIVVMQHPSVITEGYTPVFHAHTAQVACTV 349          
BLAST of CB305012 vs. ExPASy Swiss-Prot
Match: EF1A_METST (Elongation factor 1-alpha OS=Methanosphaera stadtmanae (strain DSM 3091) GN=tuf PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.388e-18
Identity = 34/66 (51.52%), Postives = 45/66 (68.18%), Query Frame = -1
Query:  244 FSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGV 441
            F  L  K+D  +G+  E+ P FLK GDA +V + PTKPMV+E   + P +GRFA+RDM QTVA G+
Sbjct:  340 FLSLDVKLDPATGQPKEENPDFLKTGDAALVTIKPTKPMVIENIKEIPHMGRFAIRDMGQTVAAGM 405          

HSP 2 Score: 38.891 bits (89), Expect = 1.388e-18
Identity = 14/43 (32.56%), Postives = 25/43 (58.14%), Query Frame = -3
Query:  449 SNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIA 577
            + +  +P   A  F +Q++++ HPG +  GY PV   HT+ +A
Sbjct:  295 AGTTQNPPSVAKEFKAQIVVLQHPGVMTVGYTPVFHAHTAQVA 337          
BLAST of CB305012 vs. ExPASy Swiss-Prot
Match: EF1A_NATPD (Elongation factor 1-alpha OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=tuf PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.157e-18
Identity = 30/67 (44.78%), Postives = 47/67 (70.15%), Query Frame = -1
Query:  223 KIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKK 423
            KID  SG+  E+ P F+++GDA +V + P KP+ +E+ ++ P LG FA+RDM QTVA G + +V ++
Sbjct:  356 KIDPSSGEVAEENPDFIQSGDAAVVTVRPQKPLSIESSNEIPELGSFAIRDMGQTVAAGKVLSVNER 422          

HSP 2 Score: 43.8986 bits (102), Expect = 5.157e-18
Identity = 18/42 (42.86%), Postives = 24/42 (57.14%), Query Frame = -3
Query:  440 DDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKV 565
            DDP   A  F +QV++M HP  I  GY PV   HT+ +A  +
Sbjct:  309 DDPPSVAETFQAQVVVMQHPSVITAGYTPVFHAHTAQVACTI 350          
BLAST of CB305012 vs. ExPASy Swiss-Prot
Match: EF1A_GIALA (Elongation factor 1-alpha (Fragment) OS=Giardia lamblia GN=TEF1 PE=2 SV=1)

HSP 1 Score: 55.4546 bits (132), Expect = 8.728e-18
Identity = 23/39 (58.97%), Postives = 30/39 (76.92%), Query Frame = -3
Query:  449 DDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIA 565
            +DP     +FT+QVI+MNHP +I  GY PV+DCHT+HIA
Sbjct:  300 NDPPVGCKSFTAQVIVMNHPKKIQPGYTPVIDCHTAHIA 338          

HSP 2 Score: 53.9138 bits (128), Expect = 8.728e-18
Identity = 26/57 (45.61%), Postives = 36/57 (63.16%), Query Frame = -1
Query:  274 KFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVR 444
            +F   + K+D+R+ K   + P     GD  +VKM+P KP+  ETF+DY PLG FAVR
Sbjct:  340 QFQLFLQKLDKRTLKPEMENPPDAGRGDCIIVKMVPQKPLCCETFNDYAPLGPFAVR 396          
The following BLAST results are available for this feature:
BLAST of CB305012 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 158
Match NameE-valueIdentityDescription
EF1A_METAC1.696e-1947.76Elongation factor 1-alpha OS=Methanosarcina acetiv... [more]
EF1A_META32.868e-1950.00Elongation factor 1-alpha OS=Methanococcus aeolicu... [more]
EF1A_NANEQ3.729e-1944.16Elongation factor 1-alpha OS=Nanoarchaeum equitans... [more]
EF1A_PICTO4.852e-1942.47Elongation factor 1-alpha OS=Picrophilus torridus ... [more]
EF1A_UNCMA8.204e-1943.06Elongation factor 1-alpha OS=Uncultured methanogen... [more]
EF1A_METBU1.067e-1846.27Elongation factor 1-alpha OS=Methanococcoides burt... [more]
EF1A_HALMA1.067e-1846.27Elongation factor 1-alpha OS=Haloarcula marismortu... [more]
EF1A_METST1.388e-1851.52Elongation factor 1-alpha OS=Methanosphaera stadtm... [more]
EF1A_NATPD5.157e-1844.78Elongation factor 1-alpha OS=Natronomonas pharaoni... [more]
EF1A_GIALA8.728e-1858.97Elongation factor 1-alpha (Fragment) OS=Giardia la... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0003_IIaR_G01 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IIaR_G01 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB305012 ID=CB305012; Name=CB305012; organism=Citrus sinensis; type=EST; length=579bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTACCAACTTACCAAAAAAAAAC
TCTGATATAAAACCAAATTCAGAGAATTAAAATGAAGTCCCGTAAAACAA
ACTAAAACACGACAAAAATAGCATAAACAGAGAAAATAAAAGCTAACTAT
AGCAGATAGATCCCAAAAAACTCCTCACTTCTTCTTGGCTGCAGACTTGG
TGACCTTGGCACCTGTTGGATCCTTCTTTTCAACATTCTTAATCACACCA
ACAGCAACAGTCTGACGCATGTCCCTAACGGCAAAACGACCAAGAGGTGG
GTAGTCAGAGAAGGTTTCAACAACCATGGGCTTGGTGGGAATCATCTTAA
CCATTCCAGCATCTCCATTCTTCAAGAACTTGGGCTCCTTCTCAAGCTCC
TTGCCTGATCGCCTATCAATCTTCGTCACGAGCTCAGAAAACTTTGACGG
CAATGTGGGAGGTGTGGCAGTCAAGCACTGGGGCATATCCATTTCCAATC
TGGCCAGGGTGGTTCATGATGATGACCTGTGAGGTGAAGTTGGCAGCTTC
CCTGGCTGGATCATCCTTCGAGTTGGAAG
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