CB305012 | Citrus Genome Database

Overview


Name	CB305012
Unique Name	CB305012
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	579

Libraries


Library Name	Type
Flavedo Mature	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Csv1_Contig2325	contig	Csv1_Contig2325:131..710.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of CB305012 vs. ExPASy Swiss-Prot
Match: EF1A3_XENLA (Elongation factor 1-alpha, oocyte form OS=Xenopus laevis PE=1 SV=2)

HSP 1 Score: 122.865 bits (307), Expect = 3.157e-43
Identity = 60/74 (81.08%), Postives = 67/74 (90.54%), Query Frame = -1

Query:  223 KFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKK 444
            KF+EL  KIDRRSGK+LE +PKFLK+GDA +V+MIP KPM VETFSDYPPLGRFAVRDMRQTVAVGVIK V+KK
Sbjct:  371 KFAELKQKIDRRSGKKLEDDPKFLKSGDAAIVEMIPGKPMCVETFSDYPPLGRFAVRDMRQTVAVGVIKGVDKK 444

HSP 2 Score: 72.0182 bits (175), Expect = 3.157e-43
Identity = 31/44 (70.45%), Postives = 38/44 (86.36%), Query Frame = -3

Query:  443 NSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVK 574
            +SK+DP  +A +FT+QVII+NHPGQI  GYAPVLDCHT+HIA K
Sbjct:  328 DSKNDPPMQAGSFTAQVIILNHPGQISAGYAPVLDCHTAHIACK 371

[Close]

BLAST of CB305012 vs. ExPASy Swiss-Prot
Match: EF1A_SCHCO (Elongation factor 1-alpha OS=Schizophyllum commune GN=TEF1 PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 4.114e-43
Identity = 52/75 (69.33%), Postives = 68/75 (90.67%), Query Frame = -1

Query:  220 KFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKKD 444
            KF+EL+ KIDRR+GK LE  PKF+K+GDA +VK++P+KPM VE++++YPPLGRFAVRDMRQTVAVG+IK+V+K D
Sbjct:  369 KFAELLEKIDRRTGKSLEASPKFVKSGDACIVKLVPSKPMCVESYNEYPPLGRFAVRDMRQTVAVGIIKSVDKTD 443

HSP 2 Score: 79.337 bits (194), Expect = 4.114e-43
Identity = 34/45 (75.56%), Postives = 42/45 (93.33%), Query Frame = -3

Query:  443 SNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVK 577
            S+SK+DPA+EAA+F +QVI++NHPGQIG GYAPVLDCHT+HIA K
Sbjct:  325 SDSKNDPAKEAASFNAQVIVLNHPGQIGAGYAPVLDCHTAHIACK 369

[Close]

BLAST of CB305012 vs. ExPASy Swiss-Prot
Match: EF1A_CAEEL (Elongation factor 1-alpha OS=Caenorhabditis elegans GN=eft-3 PE=2 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 6.984e-43
Identity = 55/75 (73.33%), Postives = 68/75 (90.67%), Query Frame = -1

Query:  220 KFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKKD 444
            KF+EL  K+DRR+GK++E  PKFLK+GDAG+V++IPTKP+ VE+F+DY PLGRFAVRDMRQTVAVGVIK+VEK D
Sbjct:  371 KFNELKEKVDRRTGKKVEDFPKFLKSGDAGIVELIPTKPLCVESFTDYAPLGRFAVRDMRQTVAVGVIKSVEKSD 445

HSP 2 Score: 76.6406 bits (187), Expect = 6.984e-43
Identity = 34/45 (75.56%), Postives = 38/45 (84.44%), Query Frame = -3

Query:  443 SNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVK 577
            S+SK DPA+EA  F +QVIIMNHPGQI NGY PVLDCHT+HIA K
Sbjct:  327 SDSKQDPAKEARTFHAQVIIMNHPGQISNGYTPVLDCHTAHIACK 371

[Close]

BLAST of CB305012 vs. ExPASy Swiss-Prot
Match: EF1A2_XENLA (Elongation factor 1-alpha, oocyte form OS=Xenopus laevis GN=eef1ao PE=1 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 9.101e-43
Identity = 59/74 (79.73%), Postives = 67/74 (90.54%), Query Frame = -1

Query:  223 KFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKK 444
            KF+EL  KIDRRSGK+LE +PKFLK+GDA +V+MIP KPM VE+FSDYPPLGRFAVRDMRQTVAVGVIK V+KK
Sbjct:  371 KFAELKQKIDRRSGKKLEDDPKFLKSGDAAIVEMIPGKPMCVESFSDYPPLGRFAVRDMRQTVAVGVIKGVDKK 444

HSP 2 Score: 72.0182 bits (175), Expect = 9.101e-43
Identity = 31/44 (70.45%), Postives = 38/44 (86.36%), Query Frame = -3

Query:  443 NSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVK 574
            +SK+DP  +A +FT+QVII+NHPGQI  GYAPVLDCHT+HIA K
Sbjct:  328 DSKNDPPMQAGSFTAQVIILNHPGQISAGYAPVLDCHTAHIACK 371

[Close]

BLAST of CB305012 vs. ExPASy Swiss-Prot
Match: EF1A_CHICK (Elongation factor 1-alpha 1 OS=Gallus gallus GN=EEF1A PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 1.545e-42
Identity = 59/74 (79.73%), Postives = 65/74 (87.84%), Query Frame = -1

Query:  223 KFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKK 444
            KF+EL  KIDRRSGK+LE  PKFLK+GDA +V MIP KPM VE+FSDYPPLGRFAVRDMRQTVAVGVIK V+KK
Sbjct:  371 KFAELKEKIDRRSGKKLEDGPKFLKSGDAAIVDMIPGKPMCVESFSDYPPLGRFAVRDMRQTVAVGVIKAVDKK 444

HSP 2 Score: 74.3294 bits (181), Expect = 1.545e-42
Identity = 33/44 (75.00%), Postives = 38/44 (86.36%), Query Frame = -3

Query:  443 NSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVK 574
            +SK+DP  EAA FT+QVII+NHPGQI  GYAPVLDCHT+HIA K
Sbjct:  328 DSKNDPPMEAAGFTAQVIILNHPGQISAGYAPVLDCHTAHIACK 371

[Close]

BLAST of CB305012 vs. ExPASy Swiss-Prot
Match: EF1A2_RABIT (Elongation factor 1-alpha 2 OS=Oryctolagus cuniculus GN=EEF1A2 PE=1 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 2.014e-42
Identity = 58/74 (78.38%), Postives = 65/74 (87.84%), Query Frame = -1

Query:  223 KFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKK 444
            KF+EL  KIDRRSGK+LE  PK LK+GDA +V+M+P KPM VE+FS YPPLGRFAVRDMRQTVAVGVIKNVEKK
Sbjct:  371 KFAELKEKIDRRSGKKLEDNPKSLKSGDAAIVEMVPGKPMCVESFSQYPPLGRFAVRDMRQTVAVGVIKNVEKK 444

HSP 2 Score: 73.9442 bits (180), Expect = 2.014e-42
Identity = 32/44 (72.73%), Postives = 38/44 (86.36%), Query Frame = -3

Query:  443 NSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVK 574
            +SK DP +EAA FTSQVII+NHPGQI  GY+PV+DCHT+HIA K
Sbjct:  328 DSKSDPPQEAAQFTSQVIILNHPGQISAGYSPVIDCHTAHIACK 371

[Close]

BLAST of CB305012 vs. ExPASy Swiss-Prot
Match: EF1A2_HUMAN (Elongation factor 1-alpha 2 OS=Homo sapiens GN=EEF1A2 PE=1 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 2.014e-42
Identity = 58/74 (78.38%), Postives = 65/74 (87.84%), Query Frame = -1

Query:  223 KFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKK 444
            KF+EL  KIDRRSGK+LE  PK LK+GDA +V+M+P KPM VE+FS YPPLGRFAVRDMRQTVAVGVIKNVEKK
Sbjct:  371 KFAELKEKIDRRSGKKLEDNPKSLKSGDAAIVEMVPGKPMCVESFSQYPPLGRFAVRDMRQTVAVGVIKNVEKK 444

HSP 2 Score: 73.9442 bits (180), Expect = 2.014e-42
Identity = 32/44 (72.73%), Postives = 38/44 (86.36%), Query Frame = -3

Query:  443 NSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVK 574
            +SK DP +EAA FTSQVII+NHPGQI  GY+PV+DCHT+HIA K
Sbjct:  328 DSKSDPPQEAAQFTSQVIILNHPGQISAGYSPVIDCHTAHIACK 371

[Close]

BLAST of CB305012 vs. ExPASy Swiss-Prot
Match: EF1A2_BOVIN (Elongation factor 1-alpha 2 OS=Bos taurus GN=EEF1A2 PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 2.014e-42
Identity = 58/74 (78.38%), Postives = 65/74 (87.84%), Query Frame = -1

Query:  223 KFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKK 444
            KF+EL  KIDRRSGK+LE  PK LK+GDA +V+M+P KPM VE+FS YPPLGRFAVRDMRQTVAVGVIKNVEKK
Sbjct:  371 KFAELKEKIDRRSGKKLEDNPKSLKSGDAAIVEMVPGKPMCVESFSQYPPLGRFAVRDMRQTVAVGVIKNVEKK 444

HSP 2 Score: 73.9442 bits (180), Expect = 2.014e-42
Identity = 32/44 (72.73%), Postives = 38/44 (86.36%), Query Frame = -3

Query:  443 NSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVK 574
            +SK DP +EAA FTSQVII+NHPGQI  GY+PV+DCHT+HIA K
Sbjct:  328 DSKSDPPQEAAQFTSQVIILNHPGQISAGYSPVIDCHTAHIACK 371

[Close]

BLAST of CB305012 vs. ExPASy Swiss-Prot
Match: EF1A1_RAT (Elongation factor 1-alpha 1 OS=Rattus norvegicus GN=Eef1a1 PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 2.014e-42
Identity = 58/74 (78.38%), Postives = 65/74 (87.84%), Query Frame = -1

Query:  223 KFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKK 444
            KF+EL  KIDRRSGK+LE  PKFLK+GDA +V M+P KPM VE+FSDYPPLGRFAVRDMRQTVAVGVIK V+KK
Sbjct:  371 KFAELKEKIDRRSGKKLEDGPKFLKSGDAAIVDMVPGKPMCVESFSDYPPLGRFAVRDMRQTVAVGVIKAVDKK 444

HSP 2 Score: 74.3294 bits (181), Expect = 2.014e-42
Identity = 33/44 (75.00%), Postives = 38/44 (86.36%), Query Frame = -3

Query:  443 NSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVK 574
            +SK+DP  EAA FT+QVII+NHPGQI  GYAPVLDCHT+HIA K
Sbjct:  328 DSKNDPPMEAAGFTAQVIILNHPGQISAGYAPVLDCHTAHIACK 371

[Close]

BLAST of CB305012 vs. ExPASy Swiss-Prot
Match: EF1A1_RABIT (Elongation factor 1-alpha 1 OS=Oryctolagus cuniculus GN=EEF1A1 PE=1 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 2.014e-42
Identity = 58/74 (78.38%), Postives = 65/74 (87.84%), Query Frame = -1

Query:  223 KFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKK 444
            KF+EL  KIDRRSGK+LE  PKFLK+GDA +V M+P KPM VE+FSDYPPLGRFAVRDMRQTVAVGVIK V+KK
Sbjct:  371 KFAELKEKIDRRSGKKLEDGPKFLKSGDAAIVDMVPGKPMCVESFSDYPPLGRFAVRDMRQTVAVGVIKAVDKK 444

HSP 2 Score: 74.3294 bits (181), Expect = 2.014e-42
Identity = 33/44 (75.00%), Postives = 38/44 (86.36%), Query Frame = -3

Query:  443 NSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVK 574
            +SK+DP  EAA FT+QVII+NHPGQI  GYAPVLDCHT+HIA K
Sbjct:  328 DSKNDPPMEAAGFTAQVIILNHPGQISAGYAPVLDCHTAHIACK 371

The following BLAST results are available for this feature:

BLAST of CB305012 vs. ExPASy Swiss-Prot

BLAST of CB305012 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 158


Match Name	E-value	Identity	Description
EF1A3_XENLA	3.157e-43	81.08	Elongation factor 1-alpha, oocyte form OS=Xenopus ...	[more]
EF1A_SCHCO	4.114e-43	69.33	Elongation factor 1-alpha OS=Schizophyllum commune...	[more]
EF1A_CAEEL	6.984e-43	73.33	Elongation factor 1-alpha OS=Caenorhabditis elegan...	[more]
EF1A2_XENLA	9.101e-43	79.73	Elongation factor 1-alpha, oocyte form OS=Xenopus ...	[more]
EF1A_CHICK	1.545e-42	79.73	Elongation factor 1-alpha 1 OS=Gallus gallus GN=EE...	[more]
EF1A2_RABIT	2.014e-42	78.38	Elongation factor 1-alpha 2 OS=Oryctolagus cunicul...	[more]
EF1A2_HUMAN	2.014e-42	78.38	Elongation factor 1-alpha 2 OS=Homo sapiens GN=EEF...	[more]
EF1A2_BOVIN	2.014e-42	78.38	Elongation factor 1-alpha 2 OS=Bos taurus GN=EEF1A...	[more]
EF1A1_RAT	2.014e-42	78.38	Elongation factor 1-alpha 1 OS=Rattus norvegicus G...	[more]
EF1A1_RABIT	2.014e-42	78.38	Elongation factor 1-alpha 1 OS=Oryctolagus cunicul...	[more]

Pages

Properties


Property Name	Value
Genbank description	FLAVEDO0003_IIaR_G01 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IIaR_G01 3, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CB305012 ID=CB305012; Name=CB305012; organism=Citrus sinensis; type=EST; length=579bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTACCAACTTACCAAAAAAAAAC
TCTGATATAAAACCAAATTCAGAGAATTAAAATGAAGTCCCGTAAAACAA
ACTAAAACACGACAAAAATAGCATAAACAGAGAAAATAAAAGCTAACTAT
AGCAGATAGATCCCAAAAAACTCCTCACTTCTTCTTGGCTGCAGACTTGG
TGACCTTGGCACCTGTTGGATCCTTCTTTTCAACATTCTTAATCACACCA
ACAGCAACAGTCTGACGCATGTCCCTAACGGCAAAACGACCAAGAGGTGG
GTAGTCAGAGAAGGTTTCAACAACCATGGGCTTGGTGGGAATCATCTTAA
CCATTCCAGCATCTCCATTCTTCAAGAACTTGGGCTCCTTCTCAAGCTCC
TTGCCTGATCGCCTATCAATCTTCGTCACGAGCTCAGAAAACTTTGACGG
CAATGTGGGAGGTGTGGCAGTCAAGCACTGGGGCATATCCATTTCCAATC
TGGCCAGGGTGGTTCATGATGATGACCTGTGAGGTGAAGTTGGCAGCTTC
CCTGGCTGGATCATCCTTCGAGTTGGAAG