CB610826

Overview
NameCB610826
Unique NameCB610826
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length722
Libraries
Library NameType
Mature Albedocdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB610826 vs. ExPASy Swiss-Prot
Match: HSP7C_DROME (Heat shock 70 kDa protein cognate 3 OS=Drosophila melanogaster GN=Hsc70-3 PE=2 SV=2)

HSP 1 Score: 124.79 bits (312), Expect = 4.661e-28
Identity = 63/78 (80.77%), Postives = 68/78 (87.18%), Query Frame = 2
Query:  125 GPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFT-DTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSD 355
            G  IGIDLGTTYSCVGV+++ RVEIIANDQGNR TPSYVAFT D ERLIGDAAKNQ+  NP NTVFDAKRLIGR +SD
Sbjct:   29 GTVIGIDLGTTYSCVGVYKNGRVEIIANDQGNRITPSYVAFTADGERLIGDAAKNQLTTNPENTVFDAKRLIGREWSD 106          
BLAST of CB610826 vs. ExPASy Swiss-Prot
Match: GRP78_NEUCR (78 kDa glucose-regulated protein homolog OS=Neurospora crassa GN=grp78 PE=3 SV=3)

HSP 1 Score: 124.405 bits (311), Expect = 6.088e-28
Identity = 59/77 (76.62%), Postives = 64/77 (83.12%), Query Frame = 2
Query:  125 GPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSD 355
            G  IGIDLGTTYSCVGV Q  +VEI+ NDQGNR TPSYVAFTD ERL+GDAAKNQ A NP  T+FD KRLIGR+FSD
Sbjct:   39 GTVIGIDLGTTYSCVGVMQKGKVEILVNDQGNRITPSYVAFTDEERLVGDAAKNQAAANPHRTIFDIKRLIGRKFSD 115          
BLAST of CB610826 vs. ExPASy Swiss-Prot
Match: BIP2_MAIZE (Luminal-binding protein 2 OS=Zea mays GN=BIPE2 PE=1 SV=3)

HSP 1 Score: 124.405 bits (311), Expect = 6.088e-28
Identity = 58/77 (75.32%), Postives = 68/77 (88.31%), Query Frame = 2
Query:  125 GPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSD 355
            G  IGIDLGTTYSCVGV+++  VEIIANDQGNR TPS+VAFTD+ERLIG+AAKNQ A+NP  T+FD KRLIGR+F+D
Sbjct:   33 GTVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTDSERLIGEAAKNQAAVNPERTIFDVKRLIGRKFAD 109          
BLAST of CB610826 vs. ExPASy Swiss-Prot
Match: BIP3_MAIZE (Luminal-binding protein 3 OS=Zea mays GN=BIPE3 PE=2 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 7.951e-28
Identity = 58/77 (75.32%), Postives = 67/77 (87.01%), Query Frame = 2
Query:  125 GPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSD 355
            G  IGIDLGTTYSCVGV+++  VEIIANDQGNR TPS+VAFTD+ERLIG+AAKNQ A+NP  T+FD KRLIGR+F D
Sbjct:   33 GTVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTDSERLIGEAAKNQAAVNPERTIFDVKRLIGRKFQD 109          
BLAST of CB610826 vs. ExPASy Swiss-Prot
Match: GRP78_XENLA (78 kDa glucose-regulated protein OS=Xenopus laevis GN=hspa5 PE=2 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.038e-27
Identity = 61/79 (77.22%), Postives = 69/79 (87.34%), Query Frame = 2
Query:  125 GPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFT-DTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDP 358
            G  +GIDLGTTYSCVGV+++ RVEIIANDQGNR TPSYVAFT + ERLIGDAAKNQ+  NP NTVFDAKRLIGR ++DP
Sbjct:   30 GTVVGIDLGTTYSCVGVFKNGRVEIIANDQGNRITPSYVAFTPEGERLIGDAAKNQLTSNPENTVFDAKRLIGRTWNDP 108          
BLAST of CB610826 vs. ExPASy Swiss-Prot
Match: GRP78_SPETR (78 kDa glucose-regulated protein OS=Spermophilus tridecemlineatus GN=HSPA5 PE=2 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.038e-27
Identity = 61/79 (77.22%), Postives = 69/79 (87.34%), Query Frame = 2
Query:  125 GPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFT-DTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDP 358
            G  +GIDLGTTYSCVGV+++ RVEIIANDQGNR TPSYVAFT + ERLIGDAAKNQ+  NP NTVFDAKRLIGR ++DP
Sbjct:   28 GTVVGIDLGTTYSCVGVFKNGRVEIIANDQGNRITPSYVAFTPEGERLIGDAAKNQLTSNPENTVFDAKRLIGRTWNDP 106          
BLAST of CB610826 vs. ExPASy Swiss-Prot
Match: GRP78_RAT (78 kDa glucose-regulated protein OS=Rattus norvegicus GN=Hspa5 PE=1 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.038e-27
Identity = 61/79 (77.22%), Postives = 69/79 (87.34%), Query Frame = 2
Query:  125 GPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFT-DTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDP 358
            G  +GIDLGTTYSCVGV+++ RVEIIANDQGNR TPSYVAFT + ERLIGDAAKNQ+  NP NTVFDAKRLIGR ++DP
Sbjct:   28 GTVVGIDLGTTYSCVGVFKNGRVEIIANDQGNRITPSYVAFTPEGERLIGDAAKNQLTSNPENTVFDAKRLIGRTWNDP 106          
BLAST of CB610826 vs. ExPASy Swiss-Prot
Match: GRP78_MOUSE (78 kDa glucose-regulated protein OS=Mus musculus GN=Hspa5 PE=1 SV=3)

HSP 1 Score: 123.635 bits (309), Expect = 1.038e-27
Identity = 61/79 (77.22%), Postives = 69/79 (87.34%), Query Frame = 2
Query:  125 GPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFT-DTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDP 358
            G  +GIDLGTTYSCVGV+++ RVEIIANDQGNR TPSYVAFT + ERLIGDAAKNQ+  NP NTVFDAKRLIGR ++DP
Sbjct:   29 GTVVGIDLGTTYSCVGVFKNGRVEIIANDQGNRITPSYVAFTPEGERLIGDAAKNQLTSNPENTVFDAKRLIGRTWNDP 107          
BLAST of CB610826 vs. ExPASy Swiss-Prot
Match: GRP78_MESAU (78 kDa glucose-regulated protein OS=Mesocricetus auratus GN=HSPA5 PE=1 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.038e-27
Identity = 61/79 (77.22%), Postives = 69/79 (87.34%), Query Frame = 2
Query:  125 GPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFT-DTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDP 358
            G  +GIDLGTTYSCVGV+++ RVEIIANDQGNR TPSYVAFT + ERLIGDAAKNQ+  NP NTVFDAKRLIGR ++DP
Sbjct:   28 GTVVGIDLGTTYSCVGVFKNGRVEIIANDQGNRITPSYVAFTPEGERLIGDAAKNQLTSNPENTVFDAKRLIGRTWNDP 106          
BLAST of CB610826 vs. ExPASy Swiss-Prot
Match: GRP78_HUMAN (78 kDa glucose-regulated protein OS=Homo sapiens GN=HSPA5 PE=1 SV=2)

HSP 1 Score: 123.635 bits (309), Expect = 1.038e-27
Identity = 61/79 (77.22%), Postives = 69/79 (87.34%), Query Frame = 2
Query:  125 GPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFT-DTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDP 358
            G  +GIDLGTTYSCVGV+++ RVEIIANDQGNR TPSYVAFT + ERLIGDAAKNQ+  NP NTVFDAKRLIGR ++DP
Sbjct:   28 GTVVGIDLGTTYSCVGVFKNGRVEIIANDQGNRITPSYVAFTPEGERLIGDAAKNQLTSNPENTVFDAKRLIGRTWNDP 106          
The following BLAST results are available for this feature:
BLAST of CB610826 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
HSP7C_DROME4.661e-2880.77Heat shock 70 kDa protein cognate 3 OS=Drosophila ... [more]
GRP78_NEUCR6.088e-2876.6278 kDa glucose-regulated protein homolog OS=Neuros... [more]
BIP2_MAIZE6.088e-2875.32Luminal-binding protein 2 OS=Zea mays GN=BIPE2 PE=... [more]
BIP3_MAIZE7.951e-2875.32Luminal-binding protein 3 OS=Zea mays GN=BIPE3 PE=... [more]
GRP78_XENLA1.038e-2777.2278 kDa glucose-regulated protein OS=Xenopus laevis... [more]
GRP78_SPETR1.038e-2777.2278 kDa glucose-regulated protein OS=Spermophilus t... [more]
GRP78_RAT1.038e-2777.2278 kDa glucose-regulated protein OS=Rattus norvegi... [more]
GRP78_MOUSE1.038e-2777.2278 kDa glucose-regulated protein OS=Mus musculus G... [more]
GRP78_MESAU1.038e-2777.2278 kDa glucose-regulated protein OS=Mesocricetus a... [more]
GRP78_HUMAN1.038e-2777.2278 kDa glucose-regulated protein OS=Homo sapiens G... [more]

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Properties
Property NameValue
Genbank descriptionALBEDO0002_IVaF_D04 Mature Albedo Citrus sinensis cDNA clone ALBEDO0002_IVaF_D04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB610826 ID=CB610826; Name=CB610826; organism=Citrus sinensis; type=EST; length=722bp
GGGGACGGAAACGAACTAACAATCAATAAGTAAACACTAAAGCTCGCAAA
TCATCCGTGCTTTTTTTCTTTTTTTATTGTTGATAGATTCTTGATTTTGT
TAATCGATGGCTGGAAAAGGCGAAGGTCCTGCTATTGGAATTGACTTGGG
CACGACTTACTCCTGTGTCGGTGTGTGGCAACATGATCGAGTTGAGATCA
TCGCTAATGATCAAGGTAACCGAACGACGCCGTCTTATGTGGCGTTTACT
GACACTGAGCGTTTGATCGGTGACGCTGCCAAGAACCAGGTCGCCATGAA
CCCCACCAACACTGTTTTTGATGCTAAGCGTTTGATTGGGAGGCGATTCA
GTGATCCTTCTGCTGGTGCTGGTAGCGGTGCTGGCCCCAAGATTGAGGAG
GTGGATTAAATTTGAGGATTTATGCTTAATGTTGGTTAATGATTAGGGGT
TGAGTTGGGAGTGTGATCTTTTCTTCCTTTTCCTGCTTCTGTTACATATA
AAACTGTTTCCTGGTGTCTGCATAAAGATATTATGTTTTTAAGCAATGTC
TTATTTTTCCTTCCATCAGTTCTATCGATTTTGCGATACTTTTGCTTCTG
CATTGCTAGAAAATGCGATGAGCTTAAAAAAGAGAATGCAAAAACCATAC
AGCCAGCTGTTCATAATAACAAGTTGGTGTTTAATCTGTTGATATTATTT
TGAGGAACCCACATGGTCGGGG
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