CB610826

Overview
NameCB610826
Unique NameCB610826
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length722
Libraries
Library NameType
Mature Albedocdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB610826 vs. ExPASy Swiss-Prot
Match: HS71L_MOUSE (Heat shock 70 kDa protein 1-like OS=Mus musculus GN=Hspa1l PE=2 SV=4)

HSP 1 Score: 147.902 bits (372), Expect = 5.142e-35
Identity = 71/79 (89.87%), Postives = 76/79 (96.20%), Query Frame = 2
Query:  122 EGPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDP 358
            +G AIGIDLGTTYSCVGV+QH +VEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNP NTVFDAKRLIGR+F+DP
Sbjct:    5 KGMAIGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPQNTVFDAKRLIGRKFNDP 83          
BLAST of CB610826 vs. ExPASy Swiss-Prot
Match: HSP70_XENLA (Heat shock 70 kDa protein OS=Xenopus laevis PE=2 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 6.715e-35
Identity = 70/79 (88.61%), Postives = 76/79 (96.20%), Query Frame = 2
Query:  122 EGPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDP 358
            +G A+GIDLGTTYSCVGV+QH +VEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNP NTVFDAKRLIGR+F+DP
Sbjct:    4 KGVAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPQNTVFDAKRLIGRKFNDP 82          
BLAST of CB610826 vs. ExPASy Swiss-Prot
Match: HSP70_ONCMY (Heat shock cognate 70 kDa protein OS=Oncorhynchus mykiss GN=hsc71 PE=2 SV=2)

HSP 1 Score: 147.517 bits (371), Expect = 6.715e-35
Identity = 70/78 (89.74%), Postives = 75/78 (96.15%), Query Frame = 2
Query:  122 EGPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSD 355
            +GPA+GIDLGTTYSCVGV+QH +VEIIANDQGNRTTPSYVAFTD+ERLIGDAAKNQVAMNP NTVFDAKRLIGRRF D
Sbjct:    3 KGPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDSERLIGDAAKNQVAMNPCNTVFDAKRLIGRRFDD 80          
BLAST of CB610826 vs. ExPASy Swiss-Prot
Match: HS71L_MACFA (Heat shock 70 kDa protein 1-like OS=Macaca fascicularis GN=HSPA1L PE=2 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 6.715e-35
Identity = 71/79 (89.87%), Postives = 76/79 (96.20%), Query Frame = 2
Query:  122 EGPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDP 358
            +G AIGIDLGTTYSCVGV+QH +VEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNP NTVFDAKRLIGR+F+DP
Sbjct:    5 KGIAIGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPQNTVFDAKRLIGRKFNDP 83          
BLAST of CB610826 vs. ExPASy Swiss-Prot
Match: HS71L_HUMAN (Heat shock 70 kDa protein 1-like OS=Homo sapiens GN=HSPA1L PE=1 SV=2)

HSP 1 Score: 147.517 bits (371), Expect = 6.715e-35
Identity = 71/79 (89.87%), Postives = 76/79 (96.20%), Query Frame = 2
Query:  122 EGPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDP 358
            +G AIGIDLGTTYSCVGV+QH +VEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNP NTVFDAKRLIGR+F+DP
Sbjct:    5 KGIAIGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPQNTVFDAKRLIGRKFNDP 83          
BLAST of CB610826 vs. ExPASy Swiss-Prot
Match: HSP74_PARLI (Heat shock 70 kDa protein IV OS=Paracentrotus lividus GN=HSP70IV PE=3 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 8.770e-35
Identity = 70/77 (90.91%), Postives = 76/77 (98.70%), Query Frame = 2
Query:  125 GPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSD 355
            GPAIGIDLGTTYSCVGV+Q+ +VEIIANDQGNRTTPSYVAFTD+ERLIGDAAKNQVAMNPTNT+FDAKRLIGRRF+D
Sbjct:    4 GPAIGIDLGTTYSCVGVFQNGKVEIIANDQGNRTTPSYVAFTDSERLIGDAAKNQVAMNPTNTIFDAKRLIGRRFND 80          
BLAST of CB610826 vs. ExPASy Swiss-Prot
Match: HSP70_BRELC (Heat shock 70 kDa protein OS=Bremia lactucae GN=HSP70 PE=3 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 8.770e-35
Identity = 72/84 (85.71%), Postives = 76/84 (90.48%), Query Frame = 2
Query:  107 MAGKGEGPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDP 358
            MA    G ++GIDLGTTYSCVGVWQ+DRVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMN  NTVFDAK LIGR+FSDP
Sbjct:    1 MAQSVSGYSVGIDLGTTYSCVGVWQNDRVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNAHNTVFDAKPLIGRKFSDP 84          
BLAST of CB610826 vs. ExPASy Swiss-Prot
Match: HSP71_PUCGR (Heat shock protein HSS1 OS=Puccinia graminis GN=HSS1 PE=3 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 1.145e-34
Identity = 70/75 (93.33%), Postives = 74/75 (98.67%), Query Frame = 2
Query:  131 AIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSD 355
            AIGIDLGTTYSCVGVWQ+DRVEIIANDQGNRTTPSYVAFTDTERLIGD+AKNQVAMNP NTVFDAKRLIGR+F+D
Sbjct:    4 AIGIDLGTTYSCVGVWQNDRVEIIANDQGNRTTPSYVAFTDTERLIGDSAKNQVAMNPHNTVFDAKRLIGRKFAD 78          
BLAST of CB610826 vs. ExPASy Swiss-Prot
Match: HSP74_ANOAL (Heat shock protein 70 B2 OS=Anopheles albimanus GN=HSP70B2 PE=3 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.496e-34
Identity = 70/76 (92.11%), Postives = 74/76 (97.37%), Query Frame = 2
Query:  131 AIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDP 358
            AIGIDLGTTYSCVGV+QH +VEIIANDQGNRTTPSYVAF+DTERLIGDAAKNQVAMNPTNTVFDAKRLIGR+F DP
Sbjct:    4 AIGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFSDTERLIGDAAKNQVAMNPTNTVFDAKRLIGRKFDDP 79          
BLAST of CB610826 vs. ExPASy Swiss-Prot
Match: HSP72_ANOAL (Heat shock protein 70 A2 OS=Anopheles albimanus GN=HSP70A2 PE=3 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.496e-34
Identity = 70/76 (92.11%), Postives = 74/76 (97.37%), Query Frame = 2
Query:  131 AIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDP 358
            AIGIDLGTTYSCVGV+QH +VEIIANDQGNRTTPSYVAF+DTERLIGDAAKNQVAMNPTNTVFDAKRLIGR+F DP
Sbjct:    4 AIGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFSDTERLIGDAAKNQVAMNPTNTVFDAKRLIGRKFDDP 79          
The following BLAST results are available for this feature:
BLAST of CB610826 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
HS71L_MOUSE5.142e-3589.87Heat shock 70 kDa protein 1-like OS=Mus musculus G... [more]
HSP70_XENLA6.715e-3588.61Heat shock 70 kDa protein OS=Xenopus laevis PE=2 S... [more]
HSP70_ONCMY6.715e-3589.74Heat shock cognate 70 kDa protein OS=Oncorhynchus ... [more]
HS71L_MACFA6.715e-3589.87Heat shock 70 kDa protein 1-like OS=Macaca fascicu... [more]
HS71L_HUMAN6.715e-3589.87Heat shock 70 kDa protein 1-like OS=Homo sapiens G... [more]
HSP74_PARLI8.770e-3590.91Heat shock 70 kDa protein IV OS=Paracentrotus livi... [more]
HSP70_BRELC8.770e-3585.71Heat shock 70 kDa protein OS=Bremia lactucae GN=HS... [more]
HSP71_PUCGR1.145e-3493.33Heat shock protein HSS1 OS=Puccinia graminis GN=HS... [more]
HSP74_ANOAL1.496e-3492.11Heat shock protein 70 B2 OS=Anopheles albimanus GN... [more]
HSP72_ANOAL1.496e-3492.11Heat shock protein 70 A2 OS=Anopheles albimanus GN... [more]

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Properties
Property NameValue
Genbank descriptionALBEDO0002_IVaF_D04 Mature Albedo Citrus sinensis cDNA clone ALBEDO0002_IVaF_D04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB610826 ID=CB610826; Name=CB610826; organism=Citrus sinensis; type=EST; length=722bp
GGGGACGGAAACGAACTAACAATCAATAAGTAAACACTAAAGCTCGCAAA
TCATCCGTGCTTTTTTTCTTTTTTTATTGTTGATAGATTCTTGATTTTGT
TAATCGATGGCTGGAAAAGGCGAAGGTCCTGCTATTGGAATTGACTTGGG
CACGACTTACTCCTGTGTCGGTGTGTGGCAACATGATCGAGTTGAGATCA
TCGCTAATGATCAAGGTAACCGAACGACGCCGTCTTATGTGGCGTTTACT
GACACTGAGCGTTTGATCGGTGACGCTGCCAAGAACCAGGTCGCCATGAA
CCCCACCAACACTGTTTTTGATGCTAAGCGTTTGATTGGGAGGCGATTCA
GTGATCCTTCTGCTGGTGCTGGTAGCGGTGCTGGCCCCAAGATTGAGGAG
GTGGATTAAATTTGAGGATTTATGCTTAATGTTGGTTAATGATTAGGGGT
TGAGTTGGGAGTGTGATCTTTTCTTCCTTTTCCTGCTTCTGTTACATATA
AAACTGTTTCCTGGTGTCTGCATAAAGATATTATGTTTTTAAGCAATGTC
TTATTTTTCCTTCCATCAGTTCTATCGATTTTGCGATACTTTTGCTTCTG
CATTGCTAGAAAATGCGATGAGCTTAAAAAAGAGAATGCAAAAACCATAC
AGCCAGCTGTTCATAATAACAAGTTGGTGTTTAATCTGTTGATATTATTT
TGAGGAACCCACATGGTCGGGG
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