CB610826

Overview
NameCB610826
Unique NameCB610826
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length722
Libraries
Library NameType
Mature Albedocdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB610826 vs. ExPASy Swiss-Prot
Match: DNAK_ECOL5 (Chaperone protein dnaK OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=dnaK PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 9.118e-16
Identity = 42/78 (53.85%), Postives = 51/78 (65.38%), Query Frame = 2
Query:  125 GPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFT-DTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSD 355
            G  IGIDLGTT SCV +       ++ N +G+RTTPS +A+T D E L+G  AK Q   NP NT+F  KRLIGRRF D
Sbjct:    2 GKIIGIDLGTTNSCVAIMDGTTPRVLENAEGDRTTPSIIAYTQDGETLVGQPAKRQAVTNPQNTLFAIKRLIGRRFQD 79          
BLAST of CB610826 vs. ExPASy Swiss-Prot
Match: DNAK_ECOK1 (Chaperone protein dnaK OS=Escherichia coli O1:K1 / APEC GN=dnaK PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 9.118e-16
Identity = 42/78 (53.85%), Postives = 51/78 (65.38%), Query Frame = 2
Query:  125 GPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFT-DTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSD 355
            G  IGIDLGTT SCV +       ++ N +G+RTTPS +A+T D E L+G  AK Q   NP NT+F  KRLIGRRF D
Sbjct:    2 GKIIGIDLGTTNSCVAIMDGTTPRVLENAEGDRTTPSIIAYTQDGETLVGQPAKRQAVTNPQNTLFAIKRLIGRRFQD 79          
BLAST of CB610826 vs. ExPASy Swiss-Prot
Match: DNAK_ECOHS (Chaperone protein dnaK OS=Escherichia coli O9:H4 (strain HS) GN=dnaK PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 9.118e-16
Identity = 42/78 (53.85%), Postives = 51/78 (65.38%), Query Frame = 2
Query:  125 GPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFT-DTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSD 355
            G  IGIDLGTT SCV +       ++ N +G+RTTPS +A+T D E L+G  AK Q   NP NT+F  KRLIGRRF D
Sbjct:    2 GKIIGIDLGTTNSCVAIMDGTTPRVLENAEGDRTTPSIIAYTQDGETLVGQPAKRQAVTNPQNTLFAIKRLIGRRFQD 79          
BLAST of CB610826 vs. ExPASy Swiss-Prot
Match: DNAK_ECO57 (Chaperone protein dnaK OS=Escherichia coli O157:H7 GN=dnaK PE=2 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 9.118e-16
Identity = 42/78 (53.85%), Postives = 51/78 (65.38%), Query Frame = 2
Query:  125 GPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFT-DTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSD 355
            G  IGIDLGTT SCV +       ++ N +G+RTTPS +A+T D E L+G  AK Q   NP NT+F  KRLIGRRF D
Sbjct:    2 GKIIGIDLGTTNSCVAIMDGTTPRVLENAEGDRTTPSIIAYTQDGETLVGQPAKRQAVTNPQNTLFAIKRLIGRRFQD 79          
BLAST of CB610826 vs. ExPASy Swiss-Prot
Match: DNAK_ECO24 (Chaperone protein dnaK OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=dnaK PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 9.118e-16
Identity = 42/78 (53.85%), Postives = 51/78 (65.38%), Query Frame = 2
Query:  125 GPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFT-DTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSD 355
            G  IGIDLGTT SCV +       ++ N +G+RTTPS +A+T D E L+G  AK Q   NP NT+F  KRLIGRRF D
Sbjct:    2 GKIIGIDLGTTNSCVAIMDGTTPRVLENAEGDRTTPSIIAYTQDGETLVGQPAKRQAVTNPQNTLFAIKRLIGRRFQD 79          
BLAST of CB610826 vs. ExPASy Swiss-Prot
Match: DNAK_DEIDV (Chaperone protein dnaK OS=Deinococcus deserti (strain VCD115 / DSM 17065 / LMG 22923) GN=dnaK PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 9.118e-16
Identity = 39/75 (52.00%), Postives = 52/75 (69.33%), Query Frame = 2
Query:  131 AIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSD 355
            A+GIDLGTT S + V +  R E+I N +G RTTPS VA+   ERL+G  A+ Q A+NP  T+F+ KR IGRR+ +
Sbjct:    4 AVGIDLGTTNSVISVMEGGRPEVIVNAEGGRTTPSVVAYKGDERLVGQIARRQAALNPAATLFEVKRFIGRRWDE 78          
BLAST of CB610826 vs. ExPASy Swiss-Prot
Match: DNAK1_PHOPR (Chaperone protein dnaK 1 OS=Photobacterium profundum GN=dnaK1 PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 9.118e-16
Identity = 44/78 (56.41%), Postives = 51/78 (65.38%), Query Frame = 2
Query:  125 GPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFT-DTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSD 355
            G  IGIDLGTT SCV V   D+  +I N +G RTT S VA+T D E L+G  AK Q   NP NT++  KRLIGRRF D
Sbjct:    2 GRIIGIDLGTTNSCVAVLDGDKPRVIENAEGERTTASVVAYTQDGETLVGQPAKRQAVTNPENTLYAIKRLIGRRFED 79          
BLAST of CB610826 vs. ExPASy Swiss-Prot
Match: DNAK_TOLAT (Chaperone protein dnaK OS=Tolumonas auensis (strain DSM 9187 / TA4) GN=dnaK PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.191e-15
Identity = 42/78 (53.85%), Postives = 52/78 (66.67%), Query Frame = 2
Query:  125 GPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFTDT-ERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSD 355
            G  IGIDLGTT SCV +   D   +I N +G+RTTPS +A+TD  E L+G  AK Q   NP NT++  KRLIGRR+ D
Sbjct:    2 GRIIGIDLGTTNSCVAILDGDTARVIENAEGDRTTPSIIAYTDDGEILVGQPAKRQSITNPKNTLYAIKRLIGRRYED 79          
BLAST of CB610826 vs. ExPASy Swiss-Prot
Match: DNAK_PSEF5 (Chaperone protein dnaK OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) GN=dnaK PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.191e-15
Identity = 41/78 (52.56%), Postives = 54/78 (69.23%), Query Frame = 2
Query:  125 GPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAF-TDTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSD 355
            G  IGIDLGTT SCV + ++  V++I N +G RTTPS +A+  D E L+G +AK Q   NP NT++  KRLIGRRF +
Sbjct:    2 GKIIGIDLGTTNSCVSILENGNVKVIENAEGARTTPSIIAYANDGEILVGQSAKRQAVTNPHNTLYAVKRLIGRRFDE 79          
BLAST of CB610826 vs. ExPASy Swiss-Prot
Match: DNAK_MARMM (Chaperone protein dnaK OS=Maricaulis maris (strain MCS10) GN=dnaK PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.191e-15
Identity = 45/76 (59.21%), Postives = 50/76 (65.79%), Query Frame = 2
Query:  134 IGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFT-DTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDP 358
            IGIDLGTT SCV V +  + ++I N +G RTTPS VAFT D ERLIG  AK Q   NP  T F  KRLIGR   DP
Sbjct:    5 IGIDLGTTNSCVAVMESGQPKVIENSEGVRTTPSVVAFTEDGERLIGQPAKRQAVTNPDYTFFAIKRLIGRMMDDP 80          
The following BLAST results are available for this feature:
BLAST of CB610826 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DNAK_ECOL59.118e-1653.85Chaperone protein dnaK OS=Escherichia coli O6:K15:... [more]
DNAK_ECOK19.118e-1653.85Chaperone protein dnaK OS=Escherichia coli O1:K1 /... [more]
DNAK_ECOHS9.118e-1653.85Chaperone protein dnaK OS=Escherichia coli O9:H4 (... [more]
DNAK_ECO579.118e-1653.85Chaperone protein dnaK OS=Escherichia coli O157:H7... [more]
DNAK_ECO249.118e-1653.85Chaperone protein dnaK OS=Escherichia coli O139:H2... [more]
DNAK_DEIDV9.118e-1652.00Chaperone protein dnaK OS=Deinococcus deserti (str... [more]
DNAK1_PHOPR9.118e-1656.41Chaperone protein dnaK 1 OS=Photobacterium profund... [more]
DNAK_TOLAT1.191e-1553.85Chaperone protein dnaK OS=Tolumonas auensis (strai... [more]
DNAK_PSEF51.191e-1552.56Chaperone protein dnaK OS=Pseudomonas fluorescens ... [more]
DNAK_MARMM1.191e-1559.21Chaperone protein dnaK OS=Maricaulis maris (strain... [more]

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Properties
Property NameValue
Genbank descriptionALBEDO0002_IVaF_D04 Mature Albedo Citrus sinensis cDNA clone ALBEDO0002_IVaF_D04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB610826 ID=CB610826; Name=CB610826; organism=Citrus sinensis; type=EST; length=722bp
GGGGACGGAAACGAACTAACAATCAATAAGTAAACACTAAAGCTCGCAAA
TCATCCGTGCTTTTTTTCTTTTTTTATTGTTGATAGATTCTTGATTTTGT
TAATCGATGGCTGGAAAAGGCGAAGGTCCTGCTATTGGAATTGACTTGGG
CACGACTTACTCCTGTGTCGGTGTGTGGCAACATGATCGAGTTGAGATCA
TCGCTAATGATCAAGGTAACCGAACGACGCCGTCTTATGTGGCGTTTACT
GACACTGAGCGTTTGATCGGTGACGCTGCCAAGAACCAGGTCGCCATGAA
CCCCACCAACACTGTTTTTGATGCTAAGCGTTTGATTGGGAGGCGATTCA
GTGATCCTTCTGCTGGTGCTGGTAGCGGTGCTGGCCCCAAGATTGAGGAG
GTGGATTAAATTTGAGGATTTATGCTTAATGTTGGTTAATGATTAGGGGT
TGAGTTGGGAGTGTGATCTTTTCTTCCTTTTCCTGCTTCTGTTACATATA
AAACTGTTTCCTGGTGTCTGCATAAAGATATTATGTTTTTAAGCAATGTC
TTATTTTTCCTTCCATCAGTTCTATCGATTTTGCGATACTTTTGCTTCTG
CATTGCTAGAAAATGCGATGAGCTTAAAAAAGAGAATGCAAAAACCATAC
AGCCAGCTGTTCATAATAACAAGTTGGTGTTTAATCTGTTGATATTATTT
TGAGGAACCCACATGGTCGGGG
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