CF417386

Overview
NameCF417386
Unique NameCF417386
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length712
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417386 vs. ExPASy Swiss-Prot
Match: SBP1_DANRE (Selenium-binding protein 1 OS=Danio rerio GN=selenbp1 PE=2 SV=1)

HSP 1 Score: 249.98 bits (637), Expect = 9.378e-66
Identity = 120/217 (55.30%), Postives = 145/217 (66.82%), Query Frame = 1
Query:    1 DELHHSGWNSCSSCYGDSSAQRRFLVLPSLVSGRIYIVDTQKNPRAPSLHKVVEPADIVQKTGLSYPHTAHCLASGDILVSCLGDKDGNAEGNGFLLLDSE-FNVKGRWEKPGHSPAFGYDFWYQPRHKTMISSSWGAPLAFTKGFNLQHVSDGLYGRHLFVYSWPDGELKQTLDLGNTGLIPLEIRFLHDPSKDIGXCRLCLSKYPWFGFSKPKMD 648
            DELHHSGWN+CSSC+ D S +R  L+LPSL+S RIY+VD   +PRAP LHK VEP D+  K GL+ PHT+HCL SG I++S +GD  GN +G GF+LLD E F V G WE+PG +  FGYDFWYQPRH  MIS+ WGAP A   GFN   V  G YG+ L V+ W   +  QTLDLG  G IPLE+RFLHDP+   G     L    +  +  PK D
Sbjct:   70 DELHHSGWNACSSCFDDPSKRRNRLILPSLISSRIYVVDVGTDPRAPRLHKTVEPTDLFWKCGLANPHTSHCLGSGQIMISTMGDPSGNGKG-GFVLLDGETFEVIGNWEQPGDAAPFGYDFWYQPRHNVMISTEWGAPKALGNGFNPADVKAGHYGQRLHVWDWTTHKRIQTLDLGEEGAIPLEVRFLHDPAAAEGFVGCALQSTVFRFYKTPKGD 285          
BLAST of CF417386 vs. ExPASy Swiss-Prot
Match: SBP_CAEEL (Putative selenium-binding protein OS=Caenorhabditis elegans GN=R11G10.2 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.203e-12
Identity = 58/197 (29.44%), Postives = 100/197 (50.76%), Query Frame = 1
Query:    1 DELHHSGWNSCSSCYGDSSA-QRRFLVLPSLVSGRIYIVDTQKNPRAPSLHKVVEPADIVQKTGLSYPHTAHCLA--SGDILVSCLGDKDGNAEGNGFLLLDSEFNVKGRWEKPGHSPAFGYDFWYQPRHKTMISSSWGAPLAFTKGF---NLQHVSDGLYGRHLFVYSWPDGELKQTLDLGN-TGLIPLEIRFLHD 570
            DE     W   +   G+ +   RR +++P + SG+IY++  +       + K +   ++++K  +S P+    L      + VS LGD+ GN +G+ F+L+D       +  +P  S  +G DF  QPRH  MISS WG P     GF    L++VS+  +G  L V+     +L Q+++L    G + + ++FLH+
Sbjct:  134 DEPGRMNWAKSAESLGEMNKFVRRNIIVPCMNSGKIYVIAFENEKLW--IEKEIRNDELIRKD-VSCPYAVRSLPLKGAPVHVSTLGDRFGNGKGD-FILIDRRTWEVRKKSEPTFSD-YGGDFSLQPRHNLMISSEWGHPRLLRDGFMPSELENVSES-FGARLHVWQISPPKLIQSINLDTCDGSLVICVKFLHN 324          
The following BLAST results are available for this feature:
BLAST of CF417386 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
SBP1_DANRE9.378e-6655.30Selenium-binding protein 1 OS=Danio rerio GN=selen... [more]
SBP_CAEEL1.203e-1229.44Putative selenium-binding protein OS=Caenorhabditi... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-316 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-004_F07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417386 ID=CF417386; Name=CF417386; organism=Citrus sinensis; type=EST; length=712bp
GATGAACTACATCATTCGGGATGGAATTCATGTAGCTCATGCTATGGAGA
TTCATCTGCTCAACGGCGTTTTCTTGTCTTGCCTTCTTTGGTATCTGGTC
GTATATACATAGTTGACACACAAAAAAATCCAAGGGCTCCCTCTTTGCAT
AAAGTTGTTGAGCCTGCAGATATTGTACAGAAGACAGGATTATCTTATCC
TCACACGGCTCATTGCCTTGCTTCTGGTGATATCCTGGTGTCATGCCTTG
GAGATAAGGATGGAAATGCTGAGGGAAATGGATTTCTTCTCCTTGACTCA
GAATTCAATGTGAAAGGAAGATGGGAAAAACCAGGTCACAGTCCTGCTTT
CGGTTATGATTTCTGGTACCAACCTCGACACAAAACAATGATCAGCTCAT
CATGGGGAGCACCCCTGGCTTTCACCAAAGGCTTCAACCTTCAGCATGTC
TCTGATGGTCTTTATGGGAGGCATCTGTTTGTGTACAGCTGGCCGGATGG
TGAATTGAAACAGACATTAGATCTTGGTAATACAGGCCTCATACCACTGG
AGATAAGGTTCTTGCATGATCCCTCTAAAGATATAGGGNTTTGTAGGTTG
TGCCTTAGCAAGTACCCATGGTTCGGNTTTTCAAAACCCAAGATGGATCA
TGGAATCATGAGGTTGCAATATCAGTGAAATCTCTGAAGGTGCAAAATTG
GATACTTCCTGA
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