CF503893
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF503893 vs. ExPASy Swiss-Prot
Match: NHP2_ARATH (H/ACA ribonucleoprotein complex subunit 2-like protein OS=Arabidopsis thaliana GN=At5g08180 PE=1 SV=1) HSP 1 Score: 228.024 bits (580), Expect = 1.781e-59 Identity = 111/151 (73.51%), Postives = 129/151 (85.43%), Query Frame = 3 Query: 42 MGSDSEAERTPHKDEKKKIVSLAPIAKPLAGKKLSKRTLKLVRRAAEHKCLKRGVKEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLANAGATKRPTCCVLVLTKPTKGELGQEEQDKLKADYTLVVEDVKEL 494 MGSD+EAE++ K++KK ++LAPIAKPLAGKKL KRT KL+++AA KCLKRGVKEVVKSIRRG KGLCVIAGNISPIDVITH+PILCEE+ +PY+YV SKEDLA AGATKRPTCCVLV+ KP KG+L EE KLK DY V +D+KEL Sbjct: 1 MGSDTEAEKSIQKEKKKYAITLAPIAKPLAGKKLQKRTFKLIQKAAGKKCLKRGVKEVVKSIRRGQKGLCVIAGNISPIDVITHLPILCEEAGVPYVYVPSKEDLAQAGATKRPTCCVLVMLKPAKGDLTAEELAKLKTDYEQVSDDIKEL 151
BLAST of CF503893 vs. ExPASy Swiss-Prot
Match: NHP2_YEAST (H/ACA ribonucleoprotein complex subunit 2 OS=Saccharomyces cerevisiae GN=NHP2 PE=1 SV=2) HSP 1 Score: 145.591 bits (366), Expect = 1.163e-34 Identity = 73/160 (45.62%), Postives = 112/160 (70.00%), Query Frame = 3 Query: 42 MGSDSEAERTPHKDEKK---------KIVSLAPIAKPLAGKKLSKRTLKLVRRAAEHKCLKRGVKEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLANAGATKRPTCCVLVLTKPTKGELGQEEQDKLKADYTLVVEDVKEL 494 MG D++ HK+ K+ ++ ++ P AKPLA KKL+K+ LK V++A++ K +KRGVKEVVK++R+G KGL VIAG+ISP DVI+H+P+LCE+ +PYI++ SK+DL AGATKRPT V ++ K + G+ ++++ K + VV++V+ L Sbjct: 1 MGKDNKE----HKESKESKTVDNYEARMPAVLPFAKPLASKKLNKKVLKTVKKASKAKNVKRGVKEVVKALRKGEKGLVVIAGDISPADVISHIPVLCEDHSVPYIFIPSKQDLGAAGATKRPTSVVFIVPGSNKKKDGKNKEEEYKESFNEVVKEVQAL 156
BLAST of CF503893 vs. ExPASy Swiss-Prot
Match: NHP2_SCHPO (H/ACA ribonucleoprotein complex subunit 2 OS=Schizosaccharomyces pombe GN=nhp2 PE=1 SV=1) HSP 1 Score: 135.961 bits (341), Expect = 9.213e-32 Identity = 63/131 (48.09%), Postives = 98/131 (74.81%), Query Frame = 3 Query: 102 SLAPIAKPLAGKKLSKRTLKLVRRAAEHKCLKRGVKEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLANAGATKRPTCCVLVLTKPTKGELGQEEQDKLKADYTLVVEDVKEL 494 +L PIAKPLA KKL+K+ +K V++A++ K + RGVKEVVK++R+G KGL ++AG+ISP+DVI+H+P+LCE++++PY+Y SKE L A TKRPT CV+++ K ++ + E+ K Y ++++V L Sbjct: 24 ALMPIAKPLAPKKLNKKMMKTVKKASKQKHILRGVKEVVKAVRKGEKGLVILAGDISPMDVISHIPVLCEDNNVPYLYTVSKELLGEASNTKRPTSCVMIVPGGKKKDMSKVEE--YKESYEEIIKEVPAL 152
BLAST of CF503893 vs. ExPASy Swiss-Prot
Match: NHP2_XENTR (H/ACA ribonucleoprotein complex subunit 2-like protein OS=Xenopus tropicalis GN=nhp2 PE=2 SV=1) HSP 1 Score: 124.405 bits (311), Expect = 2.774e-28 Identity = 59/123 (47.97%), Postives = 81/123 (65.85%), Query Frame = 3 Query: 33 KKKMGSDSEAERTPHKDEKKKIVSLAPIAKPLAGKKLSKRTLKLVRRAAEHKCLKRGVKEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLANAGATKRPTCCVLV 401 K K E TP K + + L PIAKPLAG+KL+K+ K V++A + K ++RGVKEV K I +G KG+ V+AG+ PI+V H+P++CE+ IPY YV SK DL A +KRPTC +L+ Sbjct: 3 KAKKEESEEVPETPSKSYDELLAYLNPIAKPLAGRKLTKKLYKCVKKAIKQKNIRRGVKEVQKFINKGEKGIVVMAGDTLPIEVYCHIPVMCEDRGIPYSYVPSKSDLGAAAGSKRPTCVILI 125
BLAST of CF503893 vs. ExPASy Swiss-Prot
Match: NHP2_XENLA (H/ACA ribonucleoprotein complex subunit 2-like protein OS=Xenopus laevis GN=nhp2 PE=2 SV=1) HSP 1 Score: 121.709 bits (304), Expect = 1.798e-27 Identity = 58/123 (47.15%), Postives = 81/123 (65.85%), Query Frame = 3 Query: 33 KKKMGSDSEAERTPHKDEKKKIVSLAPIAKPLAGKKLSKRTLKLVRRAAEHKCLKRGVKEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLANAGATKRPTCCVLV 401 K K E TP K + + L P+AKPLAG+KL+K+ K V++A + K ++RGVKEV K I +G KG+ V+AG+ PI+V H+P++CE+ IPY YV SK DL A +KRPTC +L+ Sbjct: 3 KVKKEECEEVPETPSKSYDELLSYLNPVAKPLAGRKLTKKLYKCVKKAIKQKNIRRGVKEVQKFINKGEKGIVVMAGDTLPIEVYCHIPVMCEDRGIPYSYVPSKSDLGAAAGSKRPTCVILI 125
BLAST of CF503893 vs. ExPASy Swiss-Prot
Match: NHP2_DANRE (H/ACA ribonucleoprotein complex subunit 2-like protein OS=Danio rerio GN=nhp2 PE=2 SV=1) HSP 1 Score: 117.857 bits (294), Expect = 2.596e-26 Identity = 65/154 (42.21%), Postives = 93/154 (60.39%), Query Frame = 3 Query: 33 KKKMGSDSEAERTPHKDEKKKIVSLAPIAKPLAGKKLSKRTLKLVRRAAEHKCLKRGVKEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLANAGATKRPTCCVLVLTKPTKGELGQEEQDKLKADYTLVVEDVKEL 494 KK+ + E T K ++ I ++ PIA PLA +KLSK+ K V++AA+ K ++RGVKEV K I +G G+ V AG+ PIDV H+PI+CE+ +PY YV SK DL ++ +KRPTC +++ KP D+ K Y VE+V L Sbjct: 5 KKEKAGEEETGGT-EKSYQELIANINPIANPLASRKLSKKLYKCVKKAAKVKQIRRGVKEVQKFINKGETGIVVFAGDTLPIDVYCHLPIMCEDRSLPYAYVPSKVDLGSSAGSKRPTCVIMI--KP---------HDEYKEAYDECVEEVTSL 146
BLAST of CF503893 vs. ExPASy Swiss-Prot
Match: NHP2_CAEBR (Putative H/ACA ribonucleoprotein complex subunit 2-like protein OS=Caenorhabditis briggsae GN=CBG18231 PE=3 SV=1) HSP 1 Score: 117.087 bits (292), Expect = 4.429e-26 Identity = 55/125 (44.00%), Postives = 87/125 (69.60%), Query Frame = 3 Query: 48 SDSEAERTPHKDEKKKIVSLA-PIAKPLAGKKLSKRTLKLVRRAAE-HKCLKRGVKEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLANAGATKRPTCCVLVLTKPT 416 ++ A T KDE + + L PIA+PLA +KL+K+ KL+++AA K L+ G+K+V K +R+ KG+C++AGN+SPIDV +H+P +CEE +IPY+Y+ S+E L A +RP+ +L+ KP+ Sbjct: 19 AEDVAALTTEKDEYQALCELVNPIAQPLANRKLAKKVYKLIKKAAAGEKTLREGIKDVQKELRKNEKGICILAGNVSPIDVYSHIPAICEEKEIPYVYIPSREQLGLAVGHRRPS--ILIFVKPS 141
BLAST of CF503893 vs. ExPASy Swiss-Prot
Match: NHP2_MOUSE (H/ACA ribonucleoprotein complex subunit 2 OS=Mus musculus GN=Nhp2 PE=2 SV=1) HSP 1 Score: 116.701 bits (291), Expect = 5.784e-26 Identity = 60/141 (42.55%), Postives = 94/141 (66.67%), Query Frame = 3 Query: 36 KKMGSDSEAERTPHKDE---KKKIVSLAPIAKPLAGKKLSKRTLKLVRRAAEHKCLKRGVKEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLANAGATKRPTCCVLVLTKPTKGELGQEEQDK 449 K +SEA+ +E K+ +V+L PIA+PLA ++L+++ K +++A + K ++RGVKEV K + +G KG+ V+AG+ PI+V H+P+LCE+ ++PY+Y+ SK DL A +KRPTC ++V KP E QE DK Sbjct: 5 KAAPEESEAQAEGCSEERTYKELLVNLNPIAQPLASRRLTRKLYKCIKKAVKQKQIRRGVKEVQKFVNKGEKGIMVLAGDTLPIEVYCHLPVLCEDQNLPYVYIPSKTDLGAATGSKRPTCVIMV--KP--HEEYQETYDK 141
BLAST of CF503893 vs. ExPASy Swiss-Prot
Match: NHP2_CAEEL (Putative H/ACA ribonucleoprotein complex subunit 2-like protein OS=Caenorhabditis elegans GN=Y48A6B.3 PE=2 SV=1) HSP 1 Score: 115.546 bits (288), Expect = 1.289e-25 Identity = 55/118 (46.61%), Postives = 84/118 (71.19%), Query Frame = 3 Query: 69 TPHKDEKKKIVSLA-PIAKPLAGKKLSKRTLKLVRRA-AEHKCLKRGVKEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLANAGATKRPTCCVLVLTKPT 416 T KDE + + L PIA+PLA +KL+K+ KL+++A A K L+ G+K+V K +RR KG+C++AGN+SPIDV +H+P +CEE +IPY+Y+ S+E L A +RP+ +L+ KP+ Sbjct: 26 TTEKDEYQALCELVNPIAQPLANRKLAKKVYKLIKKASAGDKTLREGIKDVQKELRRNEKGICILAGNVSPIDVYSHIPGICEEKEIPYVYIPSREQLGLAVGHRRPS--ILIFVKPS 141
BLAST of CF503893 vs. ExPASy Swiss-Prot
Match: NHP2_BRABE (H/ACA ribonucleoprotein complex subunit 2-like protein OS=Branchiostoma belcheri PE=2 SV=1) HSP 1 Score: 115.161 bits (287), Expect = 1.683e-25 Identity = 54/119 (45.38%), Postives = 84/119 (70.59%), Query Frame = 3 Query: 111 PIAKPLAGKKLSKRTLKLVRRAAEHKCLKRGVKEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLANAGATKRPTCCVLVLTKPTKGELGQEEQDKLKADYT 467 PIA PLA +KL+KR K V++A++ K +++G+++V K I++G +G+ +IAG+ +PI+V H+P++CE++ IPY YV +K+DL A +KRPTCCVL+ KP E Q D+ D T Sbjct: 39 PIASPLAARKLTKRLYKTVKKASKEKNIRKGIRDVQKFIKKGERGIVLIAGDTTPIEVYCHLPVVCEDAKIPYCYVPAKQDLGEAAGSKRPTCCVLL--KP--NESYQSSYDECLTDVT 153 The following BLAST results are available for this feature:
BLAST of CF503893 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 62
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Sequences
The
following sequences are available for this feature:
EST sequence >CF503893 ID=CF503893; Name=CF503893; organism=Citrus sinensis; type=EST; length=494bpback to top |