CF504307
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF504307 vs. ExPASy Swiss-Prot
Match: RFCS_SULSO (Replication factor C small subunit OS=Sulfolobus solfataricus GN=rfcS PE=1 SV=1) HSP 1 Score: 93.5893 bits (231), Expect = 4.419e-19 Identity = 41/77 (53.25%), Postives = 52/77 (67.53%), Query Frame = 3 Query: 234 WVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGID 464 W EKYRP++L D+ R+I+D + + E +PHLL GPPGTGKT+ LA+ LYG Y LELNASD+RGID Sbjct: 10 WAEKYRPKTLDDIVNQREIIDRLKKFVKEKNMPHLLFAGPPGTGKTTAALALVHDLYGDNYTEYFLELNASDERGID 86
BLAST of CF504307 vs. ExPASy Swiss-Prot
Match: RFCS_SULAC (Replication factor C small subunit OS=Sulfolobus acidocaldarius GN=rfcS PE=3 SV=1) HSP 1 Score: 93.5893 bits (231), Expect = 4.419e-19 Identity = 41/77 (53.25%), Postives = 53/77 (68.83%), Query Frame = 3 Query: 234 WVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGID 464 W EKYRP+SL ++ ++IV+ + + E +PHLL GPPGTGKT+ LA+ R LYG Y LELNASD+RGID Sbjct: 7 WAEKYRPKSLDEIVNQKEIVERLKKFVKEKNMPHLLFAGPPGTGKTTAALALVRDLYGNNYRQYFLELNASDERGID 83
BLAST of CF504307 vs. ExPASy Swiss-Prot
Match: RFC4_DICDI (Probable replication factor C subunit 4 OS=Dictyostelium discoideum GN=rfc4 PE=3 SV=1) HSP 1 Score: 93.2041 bits (230), Expect = 5.771e-19 Identity = 42/79 (53.16%), Postives = 57/79 (72.15%), Query Frame = 3 Query: 231 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQ-YHNMILELNASDDRGID 464 PWV KYRP+++ DV+ D++ + + + LPHLL YGPPGTGKTSTILA+A +YG + +LELNASD+RGI+ Sbjct: 11 PWVAKYRPKTVDDVSYQEDVISALKKSLNTGNLPHLLFYGPPGTGKTSTILAIAMDIYGPELMKQRVLELNASDERGIE 89
BLAST of CF504307 vs. ExPASy Swiss-Prot
Match: RFCS4_MIMIV (Putative replication factor C small subunit L510 OS=Acanthamoeba polyphaga mimivirus GN=MIMI_R510 PE=3 SV=1) HSP 1 Score: 92.8189 bits (229), Expect = 7.537e-19 Identity = 38/83 (45.78%), Postives = 57/83 (68.67%), Query Frame = 3 Query: 216 DIKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGID 464 D ++ PW+EKYRP+ L D+ ++++D T + + H L YGPPGTGKTS ILA+ R+++ + N ++E NASDDRGI+ Sbjct: 3 DDESVPWIEKYRPKKLEDITQSQNLLDLFKNSTKKGEMTHFLFYGPPGTGKTSAILAMGREIFKEHFQNRVIEFNASDDRGIN 85
BLAST of CF504307 vs. ExPASy Swiss-Prot
Match: RFC4_MOUSE (Replication factor C subunit 4 OS=Mus musculus GN=Rfc4 PE=1 SV=1) HSP 1 Score: 92.0485 bits (227), Expect = 1.286e-18 Identity = 46/88 (52.27%), Postives = 61/88 (69.32%), Query Frame = 3 Query: 201 SGTPPDIKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNM-ILELNASDDRGI 461 SG +K PWVEKYRP+ + +VA ++V + + LP+LL YGPPGTGKTSTILA AR+L+G + + +LELNASD+RGI Sbjct: 29 SGETKKVKPVPWVEKYRPKCVDEVAFQDEVVAVLRKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPELFRLRVLELNASDERGI 116
BLAST of CF504307 vs. ExPASy Swiss-Prot
Match: RFC4_HUMAN (Replication factor C subunit 4 OS=Homo sapiens GN=RFC4 PE=1 SV=2) HSP 1 Score: 91.2781 bits (225), Expect = 2.193e-18 Identity = 46/88 (52.27%), Postives = 60/88 (68.18%), Query Frame = 3 Query: 201 SGTPPDIKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNM-ILELNASDDRGI 461 SG K PWVEKYRP+ + +VA ++V + + LP+LL YGPPGTGKTSTILA AR+L+G + + +LELNASD+RGI Sbjct: 29 SGENKKAKPVPWVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPELFRLRVLELNASDERGI 116
BLAST of CF504307 vs. ExPASy Swiss-Prot
Match: RFC2_YEAST (Replication factor C subunit 2 OS=Saccharomyces cerevisiae GN=RFC2 PE=1 SV=1) HSP 1 Score: 90.5077 bits (223), Expect = 3.741e-18 Identity = 44/78 (56.41%), Postives = 55/78 (70.51%), Query Frame = 3 Query: 231 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQ-YHNMILELNASDDRGI 461 PWVEKYRP++L +V A V + + LPH+L YGPPGTGKTSTILA+ ++LYG + ILELNASD+RGI Sbjct: 26 PWVEKYRPKNLDEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERGI 103
BLAST of CF504307 vs. ExPASy Swiss-Prot
Match: RFCS_METM7 (Replication factor C small subunit OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=rfcS PE=3 SV=1) HSP 1 Score: 90.1225 bits (222), Expect = 4.886e-18 Identity = 39/78 (50.00%), Postives = 53/78 (67.95%), Query Frame = 3 Query: 231 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGID 464 PWVEKYRPQ+L++V H +I+ + + +PHLL G PG GKT+ LA+A+ LYG + LELN+SD+RGID Sbjct: 4 PWVEKYRPQTLSEVVGHHEIIKRLTNYVEKKSMPHLLFSGSPGVGKTTAALALAKDLYGETWRENFLELNSSDERGID 81
BLAST of CF504307 vs. ExPASy Swiss-Prot
Match: RFCS_HALSA (Replication factor C small subunit OS=Halobacterium salinarium GN=rfcS PE=3 SV=1) HSP 1 Score: 90.1225 bits (222), Expect = 4.886e-18 Identity = 40/77 (51.95%), Postives = 54/77 (70.13%), Query Frame = 3 Query: 234 WVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGID 464 WVEKYRP+ L DV H DI + + + LPHLL GP GTGKT++ +++A++LYG + + LELNASD+RGID Sbjct: 12 WVEKYRPERLEDVVGHPDITERLQSYVDRDDLPHLLFAGPAGTGKTASSVSIAKELYGDDWQDNFLELNASDERGID 88
BLAST of CF504307 vs. ExPASy Swiss-Prot
Match: RFCS_HALS3 (Replication factor C small subunit OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=rfcS PE=3 SV=1) HSP 1 Score: 90.1225 bits (222), Expect = 4.886e-18 Identity = 40/77 (51.95%), Postives = 54/77 (70.13%), Query Frame = 3 Query: 234 WVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGID 464 WVEKYRP+ L DV H DI + + + LPHLL GP GTGKT++ +++A++LYG + + LELNASD+RGID Sbjct: 12 WVEKYRPERLEDVVGHPDITERLQSYVDRDDLPHLLFAGPAGTGKTASSVSIAKELYGDDWQDNFLELNASDERGID 88 The following BLAST results are available for this feature:
BLAST of CF504307 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 66
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Sequences
The
following sequences are available for this feature:
EST sequence >CF504307 ID=CF504307; Name=CF504307; organism=Citrus sinensis; type=EST; length=464bpback to top |