CF504307

Overview
NameCF504307
Unique NameCF504307
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length464
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504307 vs. ExPASy Swiss-Prot
Match: RFCS_SULSO (Replication factor C small subunit OS=Sulfolobus solfataricus GN=rfcS PE=1 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 4.419e-19
Identity = 41/77 (53.25%), Postives = 52/77 (67.53%), Query Frame = 3
Query:  234 WVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGID 464
            W EKYRP++L D+   R+I+D + +   E  +PHLL  GPPGTGKT+  LA+   LYG  Y    LELNASD+RGID
Sbjct:   10 WAEKYRPKTLDDIVNQREIIDRLKKFVKEKNMPHLLFAGPPGTGKTTAALALVHDLYGDNYTEYFLELNASDERGID 86          
BLAST of CF504307 vs. ExPASy Swiss-Prot
Match: RFCS_SULAC (Replication factor C small subunit OS=Sulfolobus acidocaldarius GN=rfcS PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 4.419e-19
Identity = 41/77 (53.25%), Postives = 53/77 (68.83%), Query Frame = 3
Query:  234 WVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGID 464
            W EKYRP+SL ++   ++IV+ + +   E  +PHLL  GPPGTGKT+  LA+ R LYG  Y    LELNASD+RGID
Sbjct:    7 WAEKYRPKSLDEIVNQKEIVERLKKFVKEKNMPHLLFAGPPGTGKTTAALALVRDLYGNNYRQYFLELNASDERGID 83          
BLAST of CF504307 vs. ExPASy Swiss-Prot
Match: RFC4_DICDI (Probable replication factor C subunit 4 OS=Dictyostelium discoideum GN=rfc4 PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 5.771e-19
Identity = 42/79 (53.16%), Postives = 57/79 (72.15%), Query Frame = 3
Query:  231 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQ-YHNMILELNASDDRGID 464
            PWV KYRP+++ DV+   D++  + +  +   LPHLL YGPPGTGKTSTILA+A  +YG +     +LELNASD+RGI+
Sbjct:   11 PWVAKYRPKTVDDVSYQEDVISALKKSLNTGNLPHLLFYGPPGTGKTSTILAIAMDIYGPELMKQRVLELNASDERGIE 89          
BLAST of CF504307 vs. ExPASy Swiss-Prot
Match: RFCS4_MIMIV (Putative replication factor C small subunit L510 OS=Acanthamoeba polyphaga mimivirus GN=MIMI_R510 PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 7.537e-19
Identity = 38/83 (45.78%), Postives = 57/83 (68.67%), Query Frame = 3
Query:  216 DIKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGID 464
            D ++ PW+EKYRP+ L D+   ++++D     T +  + H L YGPPGTGKTS ILA+ R+++   + N ++E NASDDRGI+
Sbjct:    3 DDESVPWIEKYRPKKLEDITQSQNLLDLFKNSTKKGEMTHFLFYGPPGTGKTSAILAMGREIFKEHFQNRVIEFNASDDRGIN 85          
BLAST of CF504307 vs. ExPASy Swiss-Prot
Match: RFC4_MOUSE (Replication factor C subunit 4 OS=Mus musculus GN=Rfc4 PE=1 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 1.286e-18
Identity = 46/88 (52.27%), Postives = 61/88 (69.32%), Query Frame = 3
Query:  201 SGTPPDIKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNM-ILELNASDDRGI 461
            SG    +K  PWVEKYRP+ + +VA   ++V  + +      LP+LL YGPPGTGKTSTILA AR+L+G +   + +LELNASD+RGI
Sbjct:   29 SGETKKVKPVPWVEKYRPKCVDEVAFQDEVVAVLRKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPELFRLRVLELNASDERGI 116          
BLAST of CF504307 vs. ExPASy Swiss-Prot
Match: RFC4_HUMAN (Replication factor C subunit 4 OS=Homo sapiens GN=RFC4 PE=1 SV=2)

HSP 1 Score: 91.2781 bits (225), Expect = 2.193e-18
Identity = 46/88 (52.27%), Postives = 60/88 (68.18%), Query Frame = 3
Query:  201 SGTPPDIKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNM-ILELNASDDRGI 461
            SG     K  PWVEKYRP+ + +VA   ++V  + +      LP+LL YGPPGTGKTSTILA AR+L+G +   + +LELNASD+RGI
Sbjct:   29 SGENKKAKPVPWVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPELFRLRVLELNASDERGI 116          
BLAST of CF504307 vs. ExPASy Swiss-Prot
Match: RFC2_YEAST (Replication factor C subunit 2 OS=Saccharomyces cerevisiae GN=RFC2 PE=1 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 3.741e-18
Identity = 44/78 (56.41%), Postives = 55/78 (70.51%), Query Frame = 3
Query:  231 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQ-YHNMILELNASDDRGI 461
            PWVEKYRP++L +V A    V  + +      LPH+L YGPPGTGKTSTILA+ ++LYG     + ILELNASD+RGI
Sbjct:   26 PWVEKYRPKNLDEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERGI 103          
BLAST of CF504307 vs. ExPASy Swiss-Prot
Match: RFCS_METM7 (Replication factor C small subunit OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=rfcS PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 4.886e-18
Identity = 39/78 (50.00%), Postives = 53/78 (67.95%), Query Frame = 3
Query:  231 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGID 464
            PWVEKYRPQ+L++V  H +I+  +     +  +PHLL  G PG GKT+  LA+A+ LYG  +    LELN+SD+RGID
Sbjct:    4 PWVEKYRPQTLSEVVGHHEIIKRLTNYVEKKSMPHLLFSGSPGVGKTTAALALAKDLYGETWRENFLELNSSDERGID 81          
BLAST of CF504307 vs. ExPASy Swiss-Prot
Match: RFCS_HALSA (Replication factor C small subunit OS=Halobacterium salinarium GN=rfcS PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 4.886e-18
Identity = 40/77 (51.95%), Postives = 54/77 (70.13%), Query Frame = 3
Query:  234 WVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGID 464
            WVEKYRP+ L DV  H DI + +      + LPHLL  GP GTGKT++ +++A++LYG  + +  LELNASD+RGID
Sbjct:   12 WVEKYRPERLEDVVGHPDITERLQSYVDRDDLPHLLFAGPAGTGKTASSVSIAKELYGDDWQDNFLELNASDERGID 88          
BLAST of CF504307 vs. ExPASy Swiss-Prot
Match: RFCS_HALS3 (Replication factor C small subunit OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=rfcS PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 4.886e-18
Identity = 40/77 (51.95%), Postives = 54/77 (70.13%), Query Frame = 3
Query:  234 WVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGID 464
            WVEKYRP+ L DV  H DI + +      + LPHLL  GP GTGKT++ +++A++LYG  + +  LELNASD+RGID
Sbjct:   12 WVEKYRPERLEDVVGHPDITERLQSYVDRDDLPHLLFAGPAGTGKTASSVSIAKELYGDDWQDNFLELNASDERGID 88          
The following BLAST results are available for this feature:
BLAST of CF504307 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 66
Match NameE-valueIdentityDescription
RFCS_SULSO4.419e-1953.25Replication factor C small subunit OS=Sulfolobus s... [more]
RFCS_SULAC4.419e-1953.25Replication factor C small subunit OS=Sulfolobus a... [more]
RFC4_DICDI5.771e-1953.16Probable replication factor C subunit 4 OS=Dictyos... [more]
RFCS4_MIMIV7.537e-1945.78Putative replication factor C small subunit L510 O... [more]
RFC4_MOUSE1.286e-1852.27Replication factor C subunit 4 OS=Mus musculus GN=... [more]
RFC4_HUMAN2.193e-1852.27Replication factor C subunit 4 OS=Homo sapiens GN=... [more]
RFC2_YEAST3.741e-1856.41Replication factor C subunit 2 OS=Saccharomyces ce... [more]
RFCS_METM74.886e-1850.00Replication factor C small subunit OS=Methanococcu... [more]
RFCS_HALSA4.886e-1851.95Replication factor C small subunit OS=Halobacteriu... [more]
RFCS_HALS34.886e-1851.95Replication factor C small subunit OS=Halobacteriu... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-796 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-16_G07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504307 ID=CF504307; Name=CF504307; organism=Citrus sinensis; type=EST; length=464bp
TGCAGTGGCAGTGAGCGTACCCTCAACTGTGAATCGAGCAGCGAAAGGCG
GGCGAGAGAGAGAGAGAGAGAGAGAGAGAGCAAGAGAGAGCGAGGCCAGC
AAACAAAATGGCGGAAGCGGAAACGGTGTCGCTTATGGACATCGACGAAG
ACGAGAACAAGAACTTGAAACCAAAAGACAACGGGAAAAACGTCATCGTT
TCAGGCACGCCACCCGACATTAAAGCCTCTCCTTGGGTCGAAAAGTACCG
ACCTCAGTCCCTCGCTGACGTGGCCGCTCATCGTGACATTGTTGATACCA
TTGATAGGTTGACTAGCGAGAACAGACTGCCCCATCTTCTGCTGTATGGT
CCTCCCGGCACAGGCAAAACATCTACCATTCTTGCTGTTGCACGGAAGCT
TTATGGAGCACAATATCACAATATGATTCTGGAGCTGAATGCGTCTGATG
ATAGAGGAATTGAC
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