CF504307
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF504307 vs. ExPASy Swiss-Prot
Match: RFC3_SCHPO (Replication factor C subunit 3 OS=Schizosaccharomyces pombe GN=rfc3 PE=1 SV=2) HSP 1 Score: 124.02 bits (310), Expect = 3.053e-28 Identity = 53/78 (67.95%), Postives = 65/78 (83.33%), Query Frame = 3 Query: 231 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGID 464 PWVEKYRP +L DV +H+DI+ T+++ S NR+PH+L YGPPGTGKTSTILA ARK+YG Y N ++ELNASDDRGID Sbjct: 24 PWVEKYRPANLEDVVSHKDIISTLEKFISSNRVPHMLFYGPPGTGKTSTILACARKIYGPNYRNQLMELNASDDRGID 101
BLAST of CF504307 vs. ExPASy Swiss-Prot
Match: RFC5_DICDI (Probable replication factor C subunit 5 OS=Dictyostelium discoideum GN=rfc5 PE=3 SV=1) HSP 1 Score: 121.324 bits (303), Expect = 1.979e-27 Identity = 56/78 (71.79%), Postives = 62/78 (79.49%), Query Frame = 3 Query: 231 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGID 464 PWVEKYRP++L D+ AH DI TI +L N LPHLL YGPPGTGKTSTI A+ARKLYG Y M+LELNASDDRGID Sbjct: 25 PWVEKYRPKNLDDLIAHEDITQTITKLIDNNTLPHLLFYGPPGTGKTSTIQAIARKLYGDNYSRMVLELNASDDRGID 102
BLAST of CF504307 vs. ExPASy Swiss-Prot
Match: RFC5_MOUSE (Replication factor C subunit 5 OS=Mus musculus GN=Rfc5 PE=2 SV=1) HSP 1 Score: 119.398 bits (298), Expect = 7.520e-27 Identity = 56/79 (70.89%), Postives = 69/79 (87.34%), Query Frame = 3 Query: 231 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLY-GAQYHNMILELNASDDRGID 464 PWVEKYRPQ+LAD+ +H+DI+ TI + SE+RLPHLLLYGPPGTGKTSTILA A++LY ++ +M+LELNASDDRGID Sbjct: 20 PWVEKYRPQTLADLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACAKQLYKDKEFGSMVLELNASDDRGID 98
BLAST of CF504307 vs. ExPASy Swiss-Prot
Match: RFC5_HUMAN (Replication factor C subunit 5 OS=Homo sapiens GN=RFC5 PE=1 SV=1) HSP 1 Score: 116.701 bits (291), Expect = 4.874e-26 Identity = 55/83 (66.27%), Postives = 70/83 (84.34%), Query Frame = 3 Query: 219 IKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLY-GAQYHNMILELNASDDRGID 464 I+ PWVEKYRPQ+L D+ +H+DI+ TI + +E+RLPHLLLYGPPGTGKTSTILA A++LY ++ +M+LELNASDDRGID Sbjct: 17 IRNLPWVEKYRPQTLNDLISHQDILSTIQKFINEDRLPHLLLYGPPGTGKTSTILACAKQLYKDKEFGSMVLELNASDDRGID 99
BLAST of CF504307 vs. ExPASy Swiss-Prot
Match: RFC3_ARXAD (Replication factor C subunit 3 OS=Arxula adeninivorans GN=RFC3 PE=3 SV=1) HSP 1 Score: 116.316 bits (290), Expect = 6.366e-26 Identity = 51/78 (65.38%), Postives = 63/78 (80.77%), Query Frame = 3 Query: 231 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGID 464 PWVEKYRP +L +VA H ++ TI + E +LPHLL +GPPGTGKT+TI+AVAR++YG Y NMILELNASD+RGID Sbjct: 18 PWVEKYRPTTLDEVAGHEGVITTIKKFVEEGKLPHLLFHGPPGTGKTTTIIAVARQIYGKNYRNMILELNASDERGID 95
BLAST of CF504307 vs. ExPASy Swiss-Prot
Match: RFC3_YEAST (Replication factor C subunit 3 OS=Saccharomyces cerevisiae GN=RFC3 PE=1 SV=1) HSP 1 Score: 114.775 bits (286), Expect = 1.852e-25 Identity = 49/78 (62.82%), Postives = 63/78 (80.77%), Query Frame = 3 Query: 231 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGID 464 PWVEKYRP++L +V +++ T+ + E +LPHLL YGPPGTGKTSTI+A+AR++YG Y NM+LELNASDDRGID Sbjct: 14 PWVEKYRPETLDEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNASDDRGID 91
BLAST of CF504307 vs. ExPASy Swiss-Prot
Match: RFC5_CAEEL (Probable replication factor C subunit 5 OS=Caenorhabditis elegans GN=F44B9.8 PE=1 SV=3) HSP 1 Score: 100.523 bits (249), Expect = 3.615e-21 Identity = 46/79 (58.23%), Postives = 58/79 (73.42%), Query Frame = 3 Query: 231 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYG-AQYHNMILELNASDDRGID 464 PWVEKYRP L ++ AH IV T+ + LPHLL YGPPGTGKT+T+LA AR++Y + +M+LELNASD+RGID Sbjct: 30 PWVEKYRPSKLDELVAHEQIVKTLTKFIENRTLPHLLFYGPPGTGKTTTVLAAARQMYSPTKMASMVLELNASDERGID 108
BLAST of CF504307 vs. ExPASy Swiss-Prot
Match: RFC2_PHANO (Replication factor C subunit 2 OS=Phaeosphaeria nodorum GN=RFC2 PE=3 SV=1) HSP 1 Score: 97.4413 bits (241), Expect = 3.060e-20 Identity = 50/106 (47.17%), Postives = 67/106 (63.21%), Query Frame = 3 Query: 162 NLKPKDNGKNVIVSGTPPDIKAS-----PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQ-YHNMILELNASDDRGI 461 NLK + S P K PWVEKYRP++L++V A + + + R + LPH+L YGPPGTGKTSTILA+A++LYG + + +LELNASD+RGI Sbjct: 6 NLKARQQAAAQASSSKTPTSKQESNRLQPWVEKYRPKTLSEVTAQDNTIQILSRTLQSSNLPHMLFYGPPGTGKTSTILALAKQLYGPELMKSRVLELNASDERGI 111
BLAST of CF504307 vs. ExPASy Swiss-Prot
Match: RFCS_SULTO (Replication factor C small subunit OS=Sulfolobus tokodaii GN=rfcS PE=3 SV=1) HSP 1 Score: 94.7449 bits (234), Expect = 1.984e-19 Identity = 42/77 (54.55%), Postives = 52/77 (67.53%), Query Frame = 3 Query: 234 WVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGID 464 W EKYRP+SL D+ +DIV+ + R + +PHLL GPPGTGKT+ LA+ LYG Y LELNASD+RGID Sbjct: 9 WAEKYRPRSLDDIVNQKDIVERLKRFVKDKNMPHLLFSGPPGTGKTTAALALVHDLYGDNYRQYFLELNASDERGID 85
BLAST of CF504307 vs. ExPASy Swiss-Prot
Match: RFCS3_MIMIV (Putative replication factor C small subunit L499 OS=Acanthamoeba polyphaga mimivirus GN=MIMI_L499 PE=3 SV=1) HSP 1 Score: 94.3597 bits (233), Expect = 2.591e-19 Identity = 46/90 (51.11%), Postives = 62/90 (68.89%), Query Frame = 3 Query: 195 IVSGTPPDIKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGID 464 I S T P K PWVEKYRPQ + + ++RDI+ ++ + LPHLL +GP G+GKTSTI AR++YG + MILELNAS++RGI+ Sbjct: 7 IASRTEPK-KQLPWVEKYRPQEIDHIISNRDIILSLKKFIESRTLPHLLFFGPSGSGKTSTIKCCAREIYGKYINYMILELNASNERGIE 95 The following BLAST results are available for this feature:
BLAST of CF504307 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 66
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Sequences
The
following sequences are available for this feature:
EST sequence >CF504307 ID=CF504307; Name=CF504307; organism=Citrus sinensis; type=EST; length=464bpback to top |