CF504307

Overview
NameCF504307
Unique NameCF504307
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length464
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504307 vs. ExPASy Swiss-Prot
Match: RFCS_HALMA (Replication factor C small subunit OS=Haloarcula marismortui GN=rfcS PE=3 SV=2)

HSP 1 Score: 90.1225 bits (222), Expect = 4.886e-18
Identity = 42/77 (54.55%), Postives = 52/77 (67.53%), Query Frame = 3
Query:  234 WVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGID 464
            W+EKYRPQ+L DV  H +IV  +    S N L H+L  GP GTGKT+   A+AR+LYG  +    LELNASD+RGID
Sbjct:   16 WIEKYRPQTLDDVMGHENIVGRLKSYVSRNDLSHMLFSGPAGTGKTTCATAIARELYGDDWREHFLELNASDERGID 92          
BLAST of CF504307 vs. ExPASy Swiss-Prot
Match: RFC4_YEAST (Replication factor C subunit 4 OS=Saccharomyces cerevisiae GN=RFC4 PE=1 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 4.886e-18
Identity = 36/78 (46.15%), Postives = 57/78 (73.08%), Query Frame = 3
Query:  231 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGID 464
            PWVEKYRPQ L+D+  +++ +D + ++  +  +PH+++ G PG GKT+++  +A +L G  Y + +LELNASDDRGID
Sbjct:   10 PWVEKYRPQVLSDIVGNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASDDRGID 87          
BLAST of CF504307 vs. ExPASy Swiss-Prot
Match: RFC2_SCHPO (Replication factor C subunit 2 OS=Schizosaccharomyces pombe GN=rfc2 PE=1 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 4.886e-18
Identity = 43/81 (53.09%), Postives = 58/81 (71.60%), Query Frame = 3
Query:  222 KASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQ-YHNMILELNASDDRGI 461
            K+ PWVE YRP++L  V++    V  + +    N LPH+L YG PGTGKTSTILA++R+L+G Q   + +LELNASD+RGI
Sbjct:   17 KSIPWVELYRPKTLDQVSSQESTVQVLKKTLLSNNLPHMLFYGSPGTGKTSTILALSRELFGPQLMKSRVLELNASDERGI 97          
BLAST of CF504307 vs. ExPASy Swiss-Prot
Match: RFC2_DICDI (Probable replication factor C subunit 2 OS=Dictyostelium discoideum GN=rfc2 PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 8.334e-18
Identity = 38/78 (48.72%), Postives = 55/78 (70.51%), Query Frame = 3
Query:  231 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGID 464
            PWVEKYRP  + D+  + + V  ++ ++ +  LP++++ GPPGTGKTS+IL +AR L GA Y   + ELNASDDR +D
Sbjct:   21 PWVEKYRPILIKDIVGNEETVSRLESISKDGNLPNIIISGPPGTGKTSSILCLARALLGANYKEAVYELNASDDRTLD 98          
BLAST of CF504307 vs. ExPASy Swiss-Prot
Match: RFCS_UNCMA (Replication factor C small subunit OS=Uncultured methanogenic archaeon RC-I GN=rfcS PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 1.088e-17
Identity = 40/77 (51.95%), Postives = 51/77 (66.23%), Query Frame = 3
Query:  234 WVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGID 464
            W EKYRP+ L DV  H+ I   +        LPHLL  GPPG GKT+  +A+AR+LYG  +H+  +ELNASD+RGID
Sbjct:    7 WTEKYRPRRLEDVIGHQQITRRLISYVKSGNLPHLLFSGPPGVGKTACAVALARELYGETWHSNFIELNASDERGID 83          
BLAST of CF504307 vs. ExPASy Swiss-Prot
Match: RFCS_NATPD (Replication factor C small subunit OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=rfcS PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.422e-17
Identity = 38/77 (49.35%), Postives = 52/77 (67.53%), Query Frame = 3
Query:  234 WVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGID 464
            W+EKYRPQ+L D+  H  I + + +  ++N LPHLL  GP G GKT+   A+A+++YG  +    LELNASD RGID
Sbjct:   14 WIEKYRPQTLDDIVGHESITERLKQYIAQNDLPHLLFAGPAGVGKTTAATAIAKEVYGDDWRENFLELNASDQRGID 90          
BLAST of CF504307 vs. ExPASy Swiss-Prot
Match: RFCS_METMP (Replication factor C small subunit OS=Methanococcus maripaludis GN=rfcS PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.422e-17
Identity = 38/78 (48.72%), Postives = 53/78 (67.95%), Query Frame = 3
Query:  231 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGID 464
            PWVEKYRP++L++V  H +I+  +     +  +PHLL  G PG GKT+  LA+A+ LYG  +    LELN+SD+RGID
Sbjct:    4 PWVEKYRPETLSEVVGHHEIIKRLTNYVEKKSMPHLLFSGSPGVGKTTAALALAKDLYGDTWRENFLELNSSDERGID 81          
BLAST of CF504307 vs. ExPASy Swiss-Prot
Match: RFC2_CHICK (Replication factor C subunit 2 OS=Gallus gallus GN=RFC2 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.422e-17
Identity = 45/118 (38.14%), Postives = 66/118 (55.93%), Query Frame = 3
Query:  120 ETVSLMDIDEDENKNLKPKDNGKNVIVSGTPPDIKAS---PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGID 464
            E   ++++ EDE       +        G+ P        PWVEKYRP  L +V  + D V  ++    E  +P++++ GPPGTGKT++IL +AR L G    + +LELNAS+DRGID
Sbjct:    2 EEEEVLEVVEDEKAGPAAAEKRGPTDTLGSAPAASGHYELPWVEKYRPLKLCEVVGNEDTVSRLEVFAKEGNVPNIIIAGPPGTGKTTSILCLARALLGPALKDAVLELNASNDRGID 119          
BLAST of CF504307 vs. ExPASy Swiss-Prot
Match: RFCS_THEPD (Replication factor C small subunit OS=Thermofilum pendens (strain Hrk 5) GN=rfcS PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.857e-17
Identity = 40/77 (51.95%), Postives = 51/77 (66.23%), Query Frame = 3
Query:  234 WVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGID 464
            WVEKYRP+SL ++    +IV  +        +PHLL  GPPGTGKT+  LA+A  LYG  + +  LELNASD+RGID
Sbjct:    6 WVEKYRPRSLDEIVDQEEIVKRLKEFVKNKNMPHLLFAGPPGTGKTTAALALAHDLYGESWRDNTLELNASDERGID 82          
BLAST of CF504307 vs. ExPASy Swiss-Prot
Match: RFCS_METM5 (Replication factor C small subunit OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=rfcS PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.857e-17
Identity = 38/78 (48.72%), Postives = 52/78 (66.67%), Query Frame = 3
Query:  231 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGID 464
            PWVEKYRP++L +V  H +I+  +     +  +PHLL  G PG GKT+  LA+A+ LYG  +    LELN+SD+RGID
Sbjct:    4 PWVEKYRPETLPEVVGHHEIIKRLTNYVEKKSMPHLLFSGSPGVGKTTAALALAKDLYGETWRENFLELNSSDERGID 81          
The following BLAST results are available for this feature:
BLAST of CF504307 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 66
Match NameE-valueIdentityDescription
RFCS_HALMA4.886e-1854.55Replication factor C small subunit OS=Haloarcula m... [more]
RFC4_YEAST4.886e-1846.15Replication factor C subunit 4 OS=Saccharomyces ce... [more]
RFC2_SCHPO4.886e-1853.09Replication factor C subunit 2 OS=Schizosaccharomy... [more]
RFC2_DICDI8.334e-1848.72Probable replication factor C subunit 2 OS=Dictyos... [more]
RFCS_UNCMA1.088e-1751.95Replication factor C small subunit OS=Uncultured m... [more]
RFCS_NATPD1.422e-1749.35Replication factor C small subunit OS=Natronomonas... [more]
RFCS_METMP1.422e-1748.72Replication factor C small subunit OS=Methanococcu... [more]
RFC2_CHICK1.422e-1738.14Replication factor C subunit 2 OS=Gallus gallus GN... [more]
RFCS_THEPD1.857e-1751.95Replication factor C small subunit OS=Thermofilum ... [more]
RFCS_METM51.857e-1748.72Replication factor C small subunit OS=Methanococcu... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-796 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-16_G07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504307 ID=CF504307; Name=CF504307; organism=Citrus sinensis; type=EST; length=464bp
TGCAGTGGCAGTGAGCGTACCCTCAACTGTGAATCGAGCAGCGAAAGGCG
GGCGAGAGAGAGAGAGAGAGAGAGAGAGAGCAAGAGAGAGCGAGGCCAGC
AAACAAAATGGCGGAAGCGGAAACGGTGTCGCTTATGGACATCGACGAAG
ACGAGAACAAGAACTTGAAACCAAAAGACAACGGGAAAAACGTCATCGTT
TCAGGCACGCCACCCGACATTAAAGCCTCTCCTTGGGTCGAAAAGTACCG
ACCTCAGTCCCTCGCTGACGTGGCCGCTCATCGTGACATTGTTGATACCA
TTGATAGGTTGACTAGCGAGAACAGACTGCCCCATCTTCTGCTGTATGGT
CCTCCCGGCACAGGCAAAACATCTACCATTCTTGCTGTTGCACGGAAGCT
TTATGGAGCACAATATCACAATATGATTCTGGAGCTGAATGCGTCTGATG
ATAGAGGAATTGAC
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