CF504307
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF504307 vs. ExPASy Swiss-Prot
Match: RFCS_HALMA (Replication factor C small subunit OS=Haloarcula marismortui GN=rfcS PE=3 SV=2) HSP 1 Score: 90.1225 bits (222), Expect = 4.886e-18 Identity = 42/77 (54.55%), Postives = 52/77 (67.53%), Query Frame = 3 Query: 234 WVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGID 464 W+EKYRPQ+L DV H +IV + S N L H+L GP GTGKT+ A+AR+LYG + LELNASD+RGID Sbjct: 16 WIEKYRPQTLDDVMGHENIVGRLKSYVSRNDLSHMLFSGPAGTGKTTCATAIARELYGDDWREHFLELNASDERGID 92
BLAST of CF504307 vs. ExPASy Swiss-Prot
Match: RFC4_YEAST (Replication factor C subunit 4 OS=Saccharomyces cerevisiae GN=RFC4 PE=1 SV=1) HSP 1 Score: 90.1225 bits (222), Expect = 4.886e-18 Identity = 36/78 (46.15%), Postives = 57/78 (73.08%), Query Frame = 3 Query: 231 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGID 464 PWVEKYRPQ L+D+ +++ +D + ++ + +PH+++ G PG GKT+++ +A +L G Y + +LELNASDDRGID Sbjct: 10 PWVEKYRPQVLSDIVGNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASDDRGID 87
BLAST of CF504307 vs. ExPASy Swiss-Prot
Match: RFC2_SCHPO (Replication factor C subunit 2 OS=Schizosaccharomyces pombe GN=rfc2 PE=1 SV=1) HSP 1 Score: 90.1225 bits (222), Expect = 4.886e-18 Identity = 43/81 (53.09%), Postives = 58/81 (71.60%), Query Frame = 3 Query: 222 KASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQ-YHNMILELNASDDRGI 461 K+ PWVE YRP++L V++ V + + N LPH+L YG PGTGKTSTILA++R+L+G Q + +LELNASD+RGI Sbjct: 17 KSIPWVELYRPKTLDQVSSQESTVQVLKKTLLSNNLPHMLFYGSPGTGKTSTILALSRELFGPQLMKSRVLELNASDERGI 97
BLAST of CF504307 vs. ExPASy Swiss-Prot
Match: RFC2_DICDI (Probable replication factor C subunit 2 OS=Dictyostelium discoideum GN=rfc2 PE=3 SV=1) HSP 1 Score: 89.3521 bits (220), Expect = 8.334e-18 Identity = 38/78 (48.72%), Postives = 55/78 (70.51%), Query Frame = 3 Query: 231 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGID 464 PWVEKYRP + D+ + + V ++ ++ + LP++++ GPPGTGKTS+IL +AR L GA Y + ELNASDDR +D Sbjct: 21 PWVEKYRPILIKDIVGNEETVSRLESISKDGNLPNIIISGPPGTGKTSSILCLARALLGANYKEAVYELNASDDRTLD 98
BLAST of CF504307 vs. ExPASy Swiss-Prot
Match: RFCS_UNCMA (Replication factor C small subunit OS=Uncultured methanogenic archaeon RC-I GN=rfcS PE=3 SV=1) HSP 1 Score: 88.9669 bits (219), Expect = 1.088e-17 Identity = 40/77 (51.95%), Postives = 51/77 (66.23%), Query Frame = 3 Query: 234 WVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGID 464 W EKYRP+ L DV H+ I + LPHLL GPPG GKT+ +A+AR+LYG +H+ +ELNASD+RGID Sbjct: 7 WTEKYRPRRLEDVIGHQQITRRLISYVKSGNLPHLLFSGPPGVGKTACAVALARELYGETWHSNFIELNASDERGID 83
BLAST of CF504307 vs. ExPASy Swiss-Prot
Match: RFCS_NATPD (Replication factor C small subunit OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=rfcS PE=3 SV=1) HSP 1 Score: 88.5817 bits (218), Expect = 1.422e-17 Identity = 38/77 (49.35%), Postives = 52/77 (67.53%), Query Frame = 3 Query: 234 WVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGID 464 W+EKYRPQ+L D+ H I + + + ++N LPHLL GP G GKT+ A+A+++YG + LELNASD RGID Sbjct: 14 WIEKYRPQTLDDIVGHESITERLKQYIAQNDLPHLLFAGPAGVGKTTAATAIAKEVYGDDWRENFLELNASDQRGID 90
BLAST of CF504307 vs. ExPASy Swiss-Prot
Match: RFCS_METMP (Replication factor C small subunit OS=Methanococcus maripaludis GN=rfcS PE=3 SV=1) HSP 1 Score: 88.5817 bits (218), Expect = 1.422e-17 Identity = 38/78 (48.72%), Postives = 53/78 (67.95%), Query Frame = 3 Query: 231 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGID 464 PWVEKYRP++L++V H +I+ + + +PHLL G PG GKT+ LA+A+ LYG + LELN+SD+RGID Sbjct: 4 PWVEKYRPETLSEVVGHHEIIKRLTNYVEKKSMPHLLFSGSPGVGKTTAALALAKDLYGDTWRENFLELNSSDERGID 81
BLAST of CF504307 vs. ExPASy Swiss-Prot
Match: RFC2_CHICK (Replication factor C subunit 2 OS=Gallus gallus GN=RFC2 PE=2 SV=1) HSP 1 Score: 88.5817 bits (218), Expect = 1.422e-17 Identity = 45/118 (38.14%), Postives = 66/118 (55.93%), Query Frame = 3 Query: 120 ETVSLMDIDEDENKNLKPKDNGKNVIVSGTPPDIKAS---PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGID 464 E ++++ EDE + G+ P PWVEKYRP L +V + D V ++ E +P++++ GPPGTGKT++IL +AR L G + +LELNAS+DRGID Sbjct: 2 EEEEVLEVVEDEKAGPAAAEKRGPTDTLGSAPAASGHYELPWVEKYRPLKLCEVVGNEDTVSRLEVFAKEGNVPNIIIAGPPGTGKTTSILCLARALLGPALKDAVLELNASNDRGID 119
BLAST of CF504307 vs. ExPASy Swiss-Prot
Match: RFCS_THEPD (Replication factor C small subunit OS=Thermofilum pendens (strain Hrk 5) GN=rfcS PE=3 SV=1) HSP 1 Score: 88.1965 bits (217), Expect = 1.857e-17 Identity = 40/77 (51.95%), Postives = 51/77 (66.23%), Query Frame = 3 Query: 234 WVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGID 464 WVEKYRP+SL ++ +IV + +PHLL GPPGTGKT+ LA+A LYG + + LELNASD+RGID Sbjct: 6 WVEKYRPRSLDEIVDQEEIVKRLKEFVKNKNMPHLLFAGPPGTGKTTAALALAHDLYGESWRDNTLELNASDERGID 82
BLAST of CF504307 vs. ExPASy Swiss-Prot
Match: RFCS_METM5 (Replication factor C small subunit OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=rfcS PE=3 SV=1) HSP 1 Score: 88.1965 bits (217), Expect = 1.857e-17 Identity = 38/78 (48.72%), Postives = 52/78 (66.67%), Query Frame = 3 Query: 231 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGID 464 PWVEKYRP++L +V H +I+ + + +PHLL G PG GKT+ LA+A+ LYG + LELN+SD+RGID Sbjct: 4 PWVEKYRPETLPEVVGHHEIIKRLTNYVEKKSMPHLLFSGSPGVGKTTAALALAKDLYGETWRENFLELNSSDERGID 81 The following BLAST results are available for this feature:
BLAST of CF504307 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 66
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Sequences
The
following sequences are available for this feature:
EST sequence >CF504307 ID=CF504307; Name=CF504307; organism=Citrus sinensis; type=EST; length=464bpback to top |