CF504307

Overview
NameCF504307
Unique NameCF504307
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length464
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504307 vs. ExPASy Swiss-Prot
Match: RFCS_METM6 (Replication factor C small subunit OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=rfcS PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 2.425e-17
Identity = 38/78 (48.72%), Postives = 52/78 (66.67%), Query Frame = 3
Query:  231 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGID 464
            PWVEKYRP++L +V  H +I+  +     +  +PHLL  G PG GKT+  LA+A+ LYG  +    LELN+SD+RGID
Sbjct:    4 PWVEKYRPETLPEVVGHHEIIKRLTNYVEKKSMPHLLFSGSPGVGKTTAALALAKDLYGDTWRENFLELNSSDERGID 81          
BLAST of CF504307 vs. ExPASy Swiss-Prot
Match: RFCS_AERPE (Replication factor C small subunit OS=Aeropyrum pernix GN=rfcS PE=3 SV=3)

HSP 1 Score: 87.8113 bits (216), Expect = 2.425e-17
Identity = 38/77 (49.35%), Postives = 53/77 (68.83%), Query Frame = 3
Query:  234 WVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGID 464
            WVEKYRP+SL D+   + +V+ + +   +  +PHLL  GPPGTGKT+   A+A  L+G  Y   +LELNASD+RGI+
Sbjct:    9 WVEKYRPRSLDDIVDQKHVVERLKQFVKQRNMPHLLFAGPPGTGKTTAAHALAHDLFGENYRQYMLELNASDERGIN 85          
BLAST of CF504307 vs. ExPASy Swiss-Prot
Match: RFCS_ARCFU (Replication factor C small subunit OS=Archaeoglobus fulgidus GN=rfcS PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 7.055e-17
Identity = 36/77 (46.75%), Postives = 53/77 (68.83%), Query Frame = 3
Query:  234 WVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGID 464
            WVEKYRP++L +V    +++  +        +PHLL  GPPGTGKT+T +A+AR L+G  + +  +E+NASD+RGID
Sbjct:    7 WVEKYRPRTLDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGID 83          
BLAST of CF504307 vs. ExPASy Swiss-Prot
Match: RFC2_RAT (Replication factor C subunit 2 OS=Rattus norvegicus GN=Rfc2 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 7.055e-17
Identity = 38/78 (48.72%), Postives = 54/78 (69.23%), Query Frame = 3
Query:  231 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGID 464
            PWVEKYRP  L ++  + D V  ++    E  +P++++ GPPGTGKT++IL +AR L G    + +LELNAS+DRGID
Sbjct:   32 PWVEKYRPVKLNEIVGNEDTVSRLEVFAREGNVPNIIIAGPPGTGKTTSILCLARALLGPALKDAVLELNASNDRGID 109          
BLAST of CF504307 vs. ExPASy Swiss-Prot
Match: RFC2_MOUSE (Replication factor C subunit 2 OS=Mus musculus GN=Rfc2 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 7.055e-17
Identity = 38/78 (48.72%), Postives = 54/78 (69.23%), Query Frame = 3
Query:  231 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGID 464
            PWVEKYRP  L ++  + D V  ++    E  +P++++ GPPGTGKT++IL +AR L G    + +LELNAS+DRGID
Sbjct:   32 PWVEKYRPLKLNEIVGNEDTVSRLEVFAREGNVPNIIIAGPPGTGKTTSILCLARALLGPALKDAVLELNASNDRGID 109          
BLAST of CF504307 vs. ExPASy Swiss-Prot
Match: RFC2_BOVIN (Replication factor C subunit 2 OS=Bos taurus GN=RFC2 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 7.055e-17
Identity = 38/78 (48.72%), Postives = 54/78 (69.23%), Query Frame = 3
Query:  231 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGID 464
            PWVEKYRP  L ++  + D V  ++    E  +P++++ GPPGTGKT++IL +AR L G    + +LELNAS+DRGID
Sbjct:   35 PWVEKYRPVKLNEIVGNEDTVSRLEVFAREGNVPNIIIAGPPGTGKTTSILCLARALLGPALKDAVLELNASNDRGID 112          
BLAST of CF504307 vs. ExPASy Swiss-Prot
Match: RFCS_METVS (Replication factor C small subunit OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=rfcS PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 9.214e-17
Identity = 37/78 (47.44%), Postives = 52/78 (66.67%), Query Frame = 3
Query:  231 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGID 464
            PWVEKYRP++L +V  H++I+  +     +  +PHLL  G PG GKT+  L +A+ LYG  +    LELN+SD+RGID
Sbjct:    4 PWVEKYRPENLDEVVGHQEIIKRLKNYVEKKSMPHLLFSGSPGVGKTTAALCLAKDLYGNTWKENFLELNSSDERGID 81          
BLAST of CF504307 vs. ExPASy Swiss-Prot
Match: RFC2_HUMAN (Replication factor C subunit 2 OS=Homo sapiens GN=RFC2 PE=1 SV=3)

HSP 1 Score: 85.5001 bits (210), Expect = 1.203e-16
Identity = 38/78 (48.72%), Postives = 54/78 (69.23%), Query Frame = 3
Query:  231 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGID 464
            PWVEKYRP  L ++  + D V  ++    E  +P++++ GPPGTGKT++IL +AR L G    + +LELNAS+DRGID
Sbjct:   37 PWVEKYRPVKLNEIVGNEDTVSRLEVFAREGNVPNIIIAGPPGTGKTTSILCLARALLGPALKDAMLELNASNDRGID 114          
BLAST of CF504307 vs. ExPASy Swiss-Prot
Match: RFCS_STAMF (Replication factor C small subunit OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=rfcS PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.572e-16
Identity = 37/77 (48.05%), Postives = 50/77 (64.94%), Query Frame = 3
Query:  234 WVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGID 464
            W EKYRP++L ++    +IV  + +   E  +PHLL  GPPGTGKT+    +A  L+G  Y   +LELNASD+RGID
Sbjct:   13 WAEKYRPKTLDEIVDQEEIVSRLKQFVKERNMPHLLFAGPPGTGKTTAAHCLAHDLFGENYRQYMLELNASDERGID 89          
BLAST of CF504307 vs. ExPASy Swiss-Prot
Match: RFC4_SCHPO (Replication factor C subunit 4 OS=Schizosaccharomyces pombe GN=rfc4 PE=1 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.572e-16
Identity = 38/78 (48.72%), Postives = 52/78 (66.67%), Query Frame = 3
Query:  231 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGID 464
            PWVEKYRP  L D+  + + +D +  +  E  +PHL++ G PG GKT++IL +A  L G  Y   +LELNASD+RGID
Sbjct:   22 PWVEKYRPIVLDDIVGNEETIDRLKVIAKEGNMPHLVISGMPGIGKTTSILCLAHALLGPAYKEGVLELNASDERGID 99          
The following BLAST results are available for this feature:
BLAST of CF504307 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 66
Match NameE-valueIdentityDescription
RFCS_METM62.425e-1748.72Replication factor C small subunit OS=Methanococcu... [more]
RFCS_AERPE2.425e-1749.35Replication factor C small subunit OS=Aeropyrum pe... [more]
RFCS_ARCFU7.055e-1746.75Replication factor C small subunit OS=Archaeoglobu... [more]
RFC2_RAT7.055e-1748.72Replication factor C subunit 2 OS=Rattus norvegicu... [more]
RFC2_MOUSE7.055e-1748.72Replication factor C subunit 2 OS=Mus musculus GN=... [more]
RFC2_BOVIN7.055e-1748.72Replication factor C subunit 2 OS=Bos taurus GN=RF... [more]
RFCS_METVS9.214e-1747.44Replication factor C small subunit OS=Methanococcu... [more]
RFC2_HUMAN1.203e-1648.72Replication factor C subunit 2 OS=Homo sapiens GN=... [more]
RFCS_STAMF1.572e-1648.05Replication factor C small subunit OS=Staphylother... [more]
RFC4_SCHPO1.572e-1648.72Replication factor C subunit 4 OS=Schizosaccharomy... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-796 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-16_G07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504307 ID=CF504307; Name=CF504307; organism=Citrus sinensis; type=EST; length=464bp
TGCAGTGGCAGTGAGCGTACCCTCAACTGTGAATCGAGCAGCGAAAGGCG
GGCGAGAGAGAGAGAGAGAGAGAGAGAGAGCAAGAGAGAGCGAGGCCAGC
AAACAAAATGGCGGAAGCGGAAACGGTGTCGCTTATGGACATCGACGAAG
ACGAGAACAAGAACTTGAAACCAAAAGACAACGGGAAAAACGTCATCGTT
TCAGGCACGCCACCCGACATTAAAGCCTCTCCTTGGGTCGAAAAGTACCG
ACCTCAGTCCCTCGCTGACGTGGCCGCTCATCGTGACATTGTTGATACCA
TTGATAGGTTGACTAGCGAGAACAGACTGCCCCATCTTCTGCTGTATGGT
CCTCCCGGCACAGGCAAAACATCTACCATTCTTGCTGTTGCACGGAAGCT
TTATGGAGCACAATATCACAATATGATTCTGGAGCTGAATGCGTCTGATG
ATAGAGGAATTGAC
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