CF504307
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF504307 vs. ExPASy Swiss-Prot
Match: RFCS_METM6 (Replication factor C small subunit OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=rfcS PE=3 SV=1) HSP 1 Score: 87.8113 bits (216), Expect = 2.425e-17 Identity = 38/78 (48.72%), Postives = 52/78 (66.67%), Query Frame = 3 Query: 231 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGID 464 PWVEKYRP++L +V H +I+ + + +PHLL G PG GKT+ LA+A+ LYG + LELN+SD+RGID Sbjct: 4 PWVEKYRPETLPEVVGHHEIIKRLTNYVEKKSMPHLLFSGSPGVGKTTAALALAKDLYGDTWRENFLELNSSDERGID 81
BLAST of CF504307 vs. ExPASy Swiss-Prot
Match: RFCS_AERPE (Replication factor C small subunit OS=Aeropyrum pernix GN=rfcS PE=3 SV=3) HSP 1 Score: 87.8113 bits (216), Expect = 2.425e-17 Identity = 38/77 (49.35%), Postives = 53/77 (68.83%), Query Frame = 3 Query: 234 WVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGID 464 WVEKYRP+SL D+ + +V+ + + + +PHLL GPPGTGKT+ A+A L+G Y +LELNASD+RGI+ Sbjct: 9 WVEKYRPRSLDDIVDQKHVVERLKQFVKQRNMPHLLFAGPPGTGKTTAAHALAHDLFGENYRQYMLELNASDERGIN 85
BLAST of CF504307 vs. ExPASy Swiss-Prot
Match: RFCS_ARCFU (Replication factor C small subunit OS=Archaeoglobus fulgidus GN=rfcS PE=1 SV=1) HSP 1 Score: 86.2705 bits (212), Expect = 7.055e-17 Identity = 36/77 (46.75%), Postives = 53/77 (68.83%), Query Frame = 3 Query: 234 WVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGID 464 WVEKYRP++L +V +++ + +PHLL GPPGTGKT+T +A+AR L+G + + +E+NASD+RGID Sbjct: 7 WVEKYRPRTLDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGID 83
BLAST of CF504307 vs. ExPASy Swiss-Prot
Match: RFC2_RAT (Replication factor C subunit 2 OS=Rattus norvegicus GN=Rfc2 PE=2 SV=1) HSP 1 Score: 86.2705 bits (212), Expect = 7.055e-17 Identity = 38/78 (48.72%), Postives = 54/78 (69.23%), Query Frame = 3 Query: 231 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGID 464 PWVEKYRP L ++ + D V ++ E +P++++ GPPGTGKT++IL +AR L G + +LELNAS+DRGID Sbjct: 32 PWVEKYRPVKLNEIVGNEDTVSRLEVFAREGNVPNIIIAGPPGTGKTTSILCLARALLGPALKDAVLELNASNDRGID 109
BLAST of CF504307 vs. ExPASy Swiss-Prot
Match: RFC2_MOUSE (Replication factor C subunit 2 OS=Mus musculus GN=Rfc2 PE=2 SV=1) HSP 1 Score: 86.2705 bits (212), Expect = 7.055e-17 Identity = 38/78 (48.72%), Postives = 54/78 (69.23%), Query Frame = 3 Query: 231 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGID 464 PWVEKYRP L ++ + D V ++ E +P++++ GPPGTGKT++IL +AR L G + +LELNAS+DRGID Sbjct: 32 PWVEKYRPLKLNEIVGNEDTVSRLEVFAREGNVPNIIIAGPPGTGKTTSILCLARALLGPALKDAVLELNASNDRGID 109
BLAST of CF504307 vs. ExPASy Swiss-Prot
Match: RFC2_BOVIN (Replication factor C subunit 2 OS=Bos taurus GN=RFC2 PE=2 SV=1) HSP 1 Score: 86.2705 bits (212), Expect = 7.055e-17 Identity = 38/78 (48.72%), Postives = 54/78 (69.23%), Query Frame = 3 Query: 231 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGID 464 PWVEKYRP L ++ + D V ++ E +P++++ GPPGTGKT++IL +AR L G + +LELNAS+DRGID Sbjct: 35 PWVEKYRPVKLNEIVGNEDTVSRLEVFAREGNVPNIIIAGPPGTGKTTSILCLARALLGPALKDAVLELNASNDRGID 112
BLAST of CF504307 vs. ExPASy Swiss-Prot
Match: RFCS_METVS (Replication factor C small subunit OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=rfcS PE=3 SV=1) HSP 1 Score: 85.8853 bits (211), Expect = 9.214e-17 Identity = 37/78 (47.44%), Postives = 52/78 (66.67%), Query Frame = 3 Query: 231 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGID 464 PWVEKYRP++L +V H++I+ + + +PHLL G PG GKT+ L +A+ LYG + LELN+SD+RGID Sbjct: 4 PWVEKYRPENLDEVVGHQEIIKRLKNYVEKKSMPHLLFSGSPGVGKTTAALCLAKDLYGNTWKENFLELNSSDERGID 81
BLAST of CF504307 vs. ExPASy Swiss-Prot
Match: RFC2_HUMAN (Replication factor C subunit 2 OS=Homo sapiens GN=RFC2 PE=1 SV=3) HSP 1 Score: 85.5001 bits (210), Expect = 1.203e-16 Identity = 38/78 (48.72%), Postives = 54/78 (69.23%), Query Frame = 3 Query: 231 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGID 464 PWVEKYRP L ++ + D V ++ E +P++++ GPPGTGKT++IL +AR L G + +LELNAS+DRGID Sbjct: 37 PWVEKYRPVKLNEIVGNEDTVSRLEVFAREGNVPNIIIAGPPGTGKTTSILCLARALLGPALKDAMLELNASNDRGID 114
BLAST of CF504307 vs. ExPASy Swiss-Prot
Match: RFCS_STAMF (Replication factor C small subunit OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=rfcS PE=3 SV=1) HSP 1 Score: 85.1149 bits (209), Expect = 1.572e-16 Identity = 37/77 (48.05%), Postives = 50/77 (64.94%), Query Frame = 3 Query: 234 WVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGID 464 W EKYRP++L ++ +IV + + E +PHLL GPPGTGKT+ +A L+G Y +LELNASD+RGID Sbjct: 13 WAEKYRPKTLDEIVDQEEIVSRLKQFVKERNMPHLLFAGPPGTGKTTAAHCLAHDLFGENYRQYMLELNASDERGID 89
BLAST of CF504307 vs. ExPASy Swiss-Prot
Match: RFC4_SCHPO (Replication factor C subunit 4 OS=Schizosaccharomyces pombe GN=rfc4 PE=1 SV=1) HSP 1 Score: 85.1149 bits (209), Expect = 1.572e-16 Identity = 38/78 (48.72%), Postives = 52/78 (66.67%), Query Frame = 3 Query: 231 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGID 464 PWVEKYRP L D+ + + +D + + E +PHL++ G PG GKT++IL +A L G Y +LELNASD+RGID Sbjct: 22 PWVEKYRPIVLDDIVGNEETIDRLKVIAKEGNMPHLVISGMPGIGKTTSILCLAHALLGPAYKEGVLELNASDERGID 99 The following BLAST results are available for this feature:
BLAST of CF504307 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 66
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Sequences
The
following sequences are available for this feature:
EST sequence >CF504307 ID=CF504307; Name=CF504307; organism=Citrus sinensis; type=EST; length=464bpback to top |