CF504307

Overview
NameCF504307
Unique NameCF504307
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length464
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504307 vs. ExPASy Swiss-Prot
Match: RFCS_METTH (Replication factor C small subunit OS=Methanobacterium thermoautotrophicum GN=rfcS PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 4.573e-16
Identity = 39/82 (47.56%), Postives = 50/82 (60.98%), Query Frame = 3
Query:  219 IKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGID 464
            I   PWVEKYRPQ L D+     I+  + R   E  +P+L+  GP G GKT+  LA+AR++ G  +    LELNASD RGID
Sbjct:    3 IMNGPWVEKYRPQKLDDIVGQEHIIPRLKRYVEEKSMPNLMFTGPAGVGKTTAALALAREILGEYWRQNFLELNASDARGID 84          
BLAST of CF504307 vs. ExPASy Swiss-Prot
Match: RFC4_CAEEL (Replication factor C subunit 4 OS=Caenorhabditis elegans GN=rfc-4 PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 4.573e-16
Identity = 40/81 (49.38%), Postives = 53/81 (65.43%), Query Frame = 3
Query:  222 KASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQ-YHNMILELNASDDRGI 461
            K   W EKYRP++L D+A   ++V  +        LPHLL YGPPGTGKTS  LA  R+L+    +H+ +L+LNASD+RGI
Sbjct:   13 KVLTWTEKYRPKTLDDIAYQDEVVTMLKGALQGRDLPHLLFYGPPGTGKTSAALAFCRQLFPKNIFHDRVLDLNASDERGI 93          
BLAST of CF504307 vs. ExPASy Swiss-Prot
Match: RFCS_NANEQ (Replication factor C small subunit OS=Nanoarchaeum equitans GN=rfcS PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 5.972e-16
Identity = 37/77 (48.05%), Postives = 49/77 (63.64%), Query Frame = 3
Query:  234 WVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGID 464
            W EKYRP+ + D+    +I   +     +  +PHLL  GPPGTGKT+  LA+A +LYG  +    LELNASD+RGID
Sbjct:    4 WTEKYRPKRIDDIINQEEIKKALKSFVEKKNMPHLLFAGPPGTGKTTAALALAHELYGDAWRENFLELNASDERGID 80          
BLAST of CF504307 vs. ExPASy Swiss-Prot
Match: RFCS_METS3 (Replication factor C small subunit OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=rfcS PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 7.800e-16
Identity = 36/80 (45.00%), Postives = 52/80 (65.00%), Query Frame = 3
Query:  225 ASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGID 464
            + PWVEKYRPQ+L D+   + IV+ + +   E  +P+L+  GP G GKT+T +A+ + + G  +    LELNASD RGID
Sbjct:    2 SGPWVEKYRPQNLDDIIGQKQIVNRLQKYVGEESMPNLMFTGPAGVGKTTTAIALVKAILGEYWRQNFLELNASDARGID 81          
BLAST of CF504307 vs. ExPASy Swiss-Prot
Match: RFCS2_PYRIL (Replication factor C small subunit 2 OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=rfcS2 PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 7.800e-16
Identity = 37/77 (48.05%), Postives = 49/77 (63.64%), Query Frame = 3
Query:  234 WVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGID 464
            W EKYRP+S  +V    ++   +        +PHLL YGPPGTGKT+  L +AR+LYG  +    LELNASD+RGI+
Sbjct:    6 WFEKYRPRSFDEVVDLEEVKSRLREFVKSGNMPHLLFYGPPGTGKTTMALVLARELYGEYWRENTLELNASDERGIN 82          
BLAST of CF504307 vs. ExPASy Swiss-Prot
Match: RFCS1_PYRIL (Replication factor C small subunit 1 OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=rfcS1 PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 7.800e-16
Identity = 37/77 (48.05%), Postives = 49/77 (63.64%), Query Frame = 3
Query:  234 WVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGID 464
            W EKYRP+S  +V    ++   +        +PHLL YGPPGTGKT+  L +AR+LYG  +    LELNASD+RGI+
Sbjct:    6 WFEKYRPRSFDEVVDLEEVKSRLREFVKSGNMPHLLFYGPPGTGKTTMALVLARELYGEYWRENTLELNASDERGIN 82          
BLAST of CF504307 vs. ExPASy Swiss-Prot
Match: RFCS_PYRCJ (Replication factor C small subunit OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=rfcS PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.019e-15
Identity = 38/76 (50.00%), Postives = 48/76 (63.16%), Query Frame = 3
Query:  234 WVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGI 461
            W EKYRP+S  +V    ++   +        LPHLL YGPPGTGKT+  L +AR+LYG  +    LELNASD+RGI
Sbjct:    6 WFEKYRPRSFEEVVDLEEVKARLREFVKAGNLPHLLFYGPPGTGKTTMALVLARELYGEYWRENTLELNASDERGI 81          
BLAST of CF504307 vs. ExPASy Swiss-Prot
Match: RFCS2_PYRAE (Replication factor C small subunit 2 OS=Pyrobaculum aerophilum GN=rfcS2 PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.330e-15
Identity = 37/77 (48.05%), Postives = 50/77 (64.94%), Query Frame = 3
Query:  234 WVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGID 464
            W EKYRP+S  +V    ++   + +      +PHLL YGPPGTGKT+  L +AR+LYG  +    LELNASD+RGI+
Sbjct:    6 WFEKYRPRSFDEVVDLEEVKARLRQFVKAGNMPHLLFYGPPGTGKTTMALVLARELYGEYWRENTLELNASDERGIN 82          
BLAST of CF504307 vs. ExPASy Swiss-Prot
Match: RFCS1_PYRAE (Replication factor C small subunit 1 OS=Pyrobaculum aerophilum GN=rfcS1 PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.738e-15
Identity = 37/77 (48.05%), Postives = 49/77 (63.64%), Query Frame = 3
Query:  234 WVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGID 464
            W EKYRP+S  +V    ++   +        +PHLL YGPPGTGKT+  L +AR+LYG  +    LELNASD+RGI+
Sbjct:    6 WFEKYRPRSFDEVVDLEEVKARLREFVKAGNMPHLLFYGPPGTGKTTMALVLARELYGEYWRENTLELNASDERGIN 82          
BLAST of CF504307 vs. ExPASy Swiss-Prot
Match: RFCS_METLZ (Replication factor C small subunit OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=rfcS PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 2.269e-15
Identity = 36/83 (43.37%), Postives = 55/83 (66.27%), Query Frame = 3
Query:  216 DIKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGID 464
            D+    W+EKYRP++LA+V   +D+V+ +    +   LPHLL  G  G GKT+  +A+AR+++G  ++    ELNASD+RGID
Sbjct:    2 DVSPEIWIEKYRPKNLAEVVGQQDVVERLRSYVATKALPHLLFTGSAGVGKTTCAVALAREMFGDTWNMNFRELNASDERGID 84          
The following BLAST results are available for this feature:
BLAST of CF504307 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 66
Match NameE-valueIdentityDescription
RFCS_METTH4.573e-1647.56Replication factor C small subunit OS=Methanobacte... [more]
RFC4_CAEEL4.573e-1649.38Replication factor C subunit 4 OS=Caenorhabditis e... [more]
RFCS_NANEQ5.972e-1648.05Replication factor C small subunit OS=Nanoarchaeum... [more]
RFCS_METS37.800e-1645.00Replication factor C small subunit OS=Methanobrevi... [more]
RFCS2_PYRIL7.800e-1648.05Replication factor C small subunit 2 OS=Pyrobaculu... [more]
RFCS1_PYRIL7.800e-1648.05Replication factor C small subunit 1 OS=Pyrobaculu... [more]
RFCS_PYRCJ1.019e-1550.00Replication factor C small subunit OS=Pyrobaculum ... [more]
RFCS2_PYRAE1.330e-1548.05Replication factor C small subunit 2 OS=Pyrobaculu... [more]
RFCS1_PYRAE1.738e-1548.05Replication factor C small subunit 1 OS=Pyrobaculu... [more]
RFCS_METLZ2.269e-1543.37Replication factor C small subunit OS=Methanocorpu... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-796 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-16_G07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504307 ID=CF504307; Name=CF504307; organism=Citrus sinensis; type=EST; length=464bp
TGCAGTGGCAGTGAGCGTACCCTCAACTGTGAATCGAGCAGCGAAAGGCG
GGCGAGAGAGAGAGAGAGAGAGAGAGAGAGCAAGAGAGAGCGAGGCCAGC
AAACAAAATGGCGGAAGCGGAAACGGTGTCGCTTATGGACATCGACGAAG
ACGAGAACAAGAACTTGAAACCAAAAGACAACGGGAAAAACGTCATCGTT
TCAGGCACGCCACCCGACATTAAAGCCTCTCCTTGGGTCGAAAAGTACCG
ACCTCAGTCCCTCGCTGACGTGGCCGCTCATCGTGACATTGTTGATACCA
TTGATAGGTTGACTAGCGAGAACAGACTGCCCCATCTTCTGCTGTATGGT
CCTCCCGGCACAGGCAAAACATCTACCATTCTTGCTGTTGCACGGAAGCT
TTATGGAGCACAATATCACAATATGATTCTGGAGCTGAATGCGTCTGATG
ATAGAGGAATTGAC
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