CF504307
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF504307 vs. ExPASy Swiss-Prot
Match: RFCS_METTH (Replication factor C small subunit OS=Methanobacterium thermoautotrophicum GN=rfcS PE=1 SV=1) HSP 1 Score: 83.5741 bits (205), Expect = 4.573e-16 Identity = 39/82 (47.56%), Postives = 50/82 (60.98%), Query Frame = 3 Query: 219 IKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGID 464 I PWVEKYRPQ L D+ I+ + R E +P+L+ GP G GKT+ LA+AR++ G + LELNASD RGID Sbjct: 3 IMNGPWVEKYRPQKLDDIVGQEHIIPRLKRYVEEKSMPNLMFTGPAGVGKTTAALALAREILGEYWRQNFLELNASDARGID 84
BLAST of CF504307 vs. ExPASy Swiss-Prot
Match: RFC4_CAEEL (Replication factor C subunit 4 OS=Caenorhabditis elegans GN=rfc-4 PE=1 SV=1) HSP 1 Score: 83.5741 bits (205), Expect = 4.573e-16 Identity = 40/81 (49.38%), Postives = 53/81 (65.43%), Query Frame = 3 Query: 222 KASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQ-YHNMILELNASDDRGI 461 K W EKYRP++L D+A ++V + LPHLL YGPPGTGKTS LA R+L+ +H+ +L+LNASD+RGI Sbjct: 13 KVLTWTEKYRPKTLDDIAYQDEVVTMLKGALQGRDLPHLLFYGPPGTGKTSAALAFCRQLFPKNIFHDRVLDLNASDERGI 93
BLAST of CF504307 vs. ExPASy Swiss-Prot
Match: RFCS_NANEQ (Replication factor C small subunit OS=Nanoarchaeum equitans GN=rfcS PE=3 SV=1) HSP 1 Score: 83.1889 bits (204), Expect = 5.972e-16 Identity = 37/77 (48.05%), Postives = 49/77 (63.64%), Query Frame = 3 Query: 234 WVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGID 464 W EKYRP+ + D+ +I + + +PHLL GPPGTGKT+ LA+A +LYG + LELNASD+RGID Sbjct: 4 WTEKYRPKRIDDIINQEEIKKALKSFVEKKNMPHLLFAGPPGTGKTTAALALAHELYGDAWRENFLELNASDERGID 80
BLAST of CF504307 vs. ExPASy Swiss-Prot
Match: RFCS_METS3 (Replication factor C small subunit OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=rfcS PE=3 SV=1) HSP 1 Score: 82.8037 bits (203), Expect = 7.800e-16 Identity = 36/80 (45.00%), Postives = 52/80 (65.00%), Query Frame = 3 Query: 225 ASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGID 464 + PWVEKYRPQ+L D+ + IV+ + + E +P+L+ GP G GKT+T +A+ + + G + LELNASD RGID Sbjct: 2 SGPWVEKYRPQNLDDIIGQKQIVNRLQKYVGEESMPNLMFTGPAGVGKTTTAIALVKAILGEYWRQNFLELNASDARGID 81
BLAST of CF504307 vs. ExPASy Swiss-Prot
Match: RFCS2_PYRIL (Replication factor C small subunit 2 OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=rfcS2 PE=3 SV=1) HSP 1 Score: 82.8037 bits (203), Expect = 7.800e-16 Identity = 37/77 (48.05%), Postives = 49/77 (63.64%), Query Frame = 3 Query: 234 WVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGID 464 W EKYRP+S +V ++ + +PHLL YGPPGTGKT+ L +AR+LYG + LELNASD+RGI+ Sbjct: 6 WFEKYRPRSFDEVVDLEEVKSRLREFVKSGNMPHLLFYGPPGTGKTTMALVLARELYGEYWRENTLELNASDERGIN 82
BLAST of CF504307 vs. ExPASy Swiss-Prot
Match: RFCS1_PYRIL (Replication factor C small subunit 1 OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=rfcS1 PE=3 SV=1) HSP 1 Score: 82.8037 bits (203), Expect = 7.800e-16 Identity = 37/77 (48.05%), Postives = 49/77 (63.64%), Query Frame = 3 Query: 234 WVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGID 464 W EKYRP+S +V ++ + +PHLL YGPPGTGKT+ L +AR+LYG + LELNASD+RGI+ Sbjct: 6 WFEKYRPRSFDEVVDLEEVKSRLREFVKSGNMPHLLFYGPPGTGKTTMALVLARELYGEYWRENTLELNASDERGIN 82
BLAST of CF504307 vs. ExPASy Swiss-Prot
Match: RFCS_PYRCJ (Replication factor C small subunit OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=rfcS PE=3 SV=1) HSP 1 Score: 82.4185 bits (202), Expect = 1.019e-15 Identity = 38/76 (50.00%), Postives = 48/76 (63.16%), Query Frame = 3 Query: 234 WVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGI 461 W EKYRP+S +V ++ + LPHLL YGPPGTGKT+ L +AR+LYG + LELNASD+RGI Sbjct: 6 WFEKYRPRSFEEVVDLEEVKARLREFVKAGNLPHLLFYGPPGTGKTTMALVLARELYGEYWRENTLELNASDERGI 81
BLAST of CF504307 vs. ExPASy Swiss-Prot
Match: RFCS2_PYRAE (Replication factor C small subunit 2 OS=Pyrobaculum aerophilum GN=rfcS2 PE=3 SV=1) HSP 1 Score: 82.0333 bits (201), Expect = 1.330e-15 Identity = 37/77 (48.05%), Postives = 50/77 (64.94%), Query Frame = 3 Query: 234 WVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGID 464 W EKYRP+S +V ++ + + +PHLL YGPPGTGKT+ L +AR+LYG + LELNASD+RGI+ Sbjct: 6 WFEKYRPRSFDEVVDLEEVKARLRQFVKAGNMPHLLFYGPPGTGKTTMALVLARELYGEYWRENTLELNASDERGIN 82
BLAST of CF504307 vs. ExPASy Swiss-Prot
Match: RFCS1_PYRAE (Replication factor C small subunit 1 OS=Pyrobaculum aerophilum GN=rfcS1 PE=3 SV=1) HSP 1 Score: 81.6481 bits (200), Expect = 1.738e-15 Identity = 37/77 (48.05%), Postives = 49/77 (63.64%), Query Frame = 3 Query: 234 WVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGID 464 W EKYRP+S +V ++ + +PHLL YGPPGTGKT+ L +AR+LYG + LELNASD+RGI+ Sbjct: 6 WFEKYRPRSFDEVVDLEEVKARLREFVKAGNMPHLLFYGPPGTGKTTMALVLARELYGEYWRENTLELNASDERGIN 82
BLAST of CF504307 vs. ExPASy Swiss-Prot
Match: RFCS_METLZ (Replication factor C small subunit OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=rfcS PE=3 SV=1) HSP 1 Score: 81.2629 bits (199), Expect = 2.269e-15 Identity = 36/83 (43.37%), Postives = 55/83 (66.27%), Query Frame = 3 Query: 216 DIKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGID 464 D+ W+EKYRP++LA+V +D+V+ + + LPHLL G G GKT+ +A+AR+++G ++ ELNASD+RGID Sbjct: 2 DVSPEIWIEKYRPKNLAEVVGQQDVVERLRSYVATKALPHLLFTGSAGVGKTTCAVALAREMFGDTWNMNFRELNASDERGID 84 The following BLAST results are available for this feature:
BLAST of CF504307 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 66
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Sequences
The
following sequences are available for this feature:
EST sequence >CF504307 ID=CF504307; Name=CF504307; organism=Citrus sinensis; type=EST; length=464bpback to top |