CF504307

Overview
NameCF504307
Unique NameCF504307
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length464
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504307 vs. ExPASy Swiss-Prot
Match: RFCS2_PYRAR (Replication factor C small subunit 2 OS=Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321) GN=rfcS2 PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.964e-15
Identity = 37/77 (48.05%), Postives = 49/77 (63.64%), Query Frame = 3
Query:  234 WVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGID 464
            W EKYRP+S  +V    ++   +        +PHLL YGPPGTGKT+  L +AR+LYG  +    LELNASD+RGI+
Sbjct:    6 WFEKYRPRSFDEVVDLEEVKARLREFVRGGNMPHLLFYGPPGTGKTTMALVLARELYGEYWRENTLELNASDERGIN 82          
BLAST of CF504307 vs. ExPASy Swiss-Prot
Match: RFCS1_PYRAR (Replication factor C small subunit 1 OS=Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321) GN=rfcS1 PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.964e-15
Identity = 37/77 (48.05%), Postives = 49/77 (63.64%), Query Frame = 3
Query:  234 WVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGID 464
            W EKYRP+S  +V    ++   +        +PHLL YGPPGTGKT+  L +AR+LYG  +    LELNASD+RGI+
Sbjct:    6 WFEKYRPRSFDEVVDLEEVKARLREFVRGGNMPHLLFYGPPGTGKTTMALVLARELYGEYWRENTLELNASDERGIN 82          
BLAST of CF504307 vs. ExPASy Swiss-Prot
Match: RFCS_PICTO (Replication factor C small subunit OS=Picrophilus torridus GN=rfcS PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 5.056e-15
Identity = 37/77 (48.05%), Postives = 49/77 (63.64%), Query Frame = 3
Query:  234 WVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGID 464
            W EKYRP+ L DV    + ++T+        LPHL+  GP GTGKTST +A+  +L+G  +    LELNASD+RGID
Sbjct:    5 WTEKYRPKRLDDVIGEDENINTLKSFVKNGDLPHLIFAGPAGTGKTSTAIALTIELFGDDWKENFLELNASDERGID 81          
BLAST of CF504307 vs. ExPASy Swiss-Prot
Match: RFCS_METST (Replication factor C small subunit OS=Methanosphaera stadtmanae (strain DSM 3091) GN=rfcS PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 6.603e-15
Identity = 39/79 (49.37%), Postives = 49/79 (62.03%), Query Frame = 3
Query:  228 SPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGID 464
            +PWVEKYRPQ+L DV     IV  + R   E  LP+++  G  G GKT+  LA+A+ L G  +    LELNASD RGID
Sbjct:    3 TPWVEKYRPQTLDDVVGQEQIVGRLKRYVEEKSLPNIMFTGFAGVGKTTCALALAKSLLGEYWQQNFLELNASDARGID 81          
BLAST of CF504307 vs. ExPASy Swiss-Prot
Match: RFC2_DROME (Replication factor C subunit 2 OS=Drosophila melanogaster GN=RfC4 PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 6.603e-15
Identity = 34/78 (43.59%), Postives = 50/78 (64.10%), Query Frame = 3
Query:  231 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGID 464
            PW+EKYRP    ++  + D V  +    ++   P++++ GPPG GKT+TI  +AR L G  Y   +LELNAS++RGID
Sbjct:   17 PWIEKYRPVKFKEIVGNEDTVARLSVFATQGNAPNIIIAGPPGVGKTTTIQCLARILLGDSYKEAVLELNASNERGID 94          
BLAST of CF504307 vs. ExPASy Swiss-Prot
Match: RFCS_METBF (Replication factor C small subunit OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rfcS PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.921e-14
Identity = 36/83 (43.37%), Postives = 52/83 (62.65%), Query Frame = 3
Query:  219 IKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQ-YHNMILELNASDDRGID 464
            IK   W+EKYRP  L  VA   + ++ +    +   LPHLL  GPPG GKT++ +++AR+++G   +     ELNASD+RGID
Sbjct:    6 IKEEIWIEKYRPVRLDQVAGQEETIERLKSYVATKNLPHLLFSGPPGVGKTASAVSIAREIFGEDLWRENFTELNASDERGID 88          
BLAST of CF504307 vs. ExPASy Swiss-Prot
Match: RFCS_METB6 (Replication factor C small subunit OS=Methanoregula boonei (strain 6A8) GN=rfcS PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 2.509e-14
Identity = 35/77 (45.45%), Postives = 46/77 (59.74%), Query Frame = 3
Query:  234 WVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGID 464
            W+EKYRP  LAD+    DIV+ +        LPHLL  G  G GKT+  + +AR+ +G  +     ELNASD+RGID
Sbjct:    8 WIEKYRPAKLADIVGQDDIVERLSSYVKSGNLPHLLFTGSAGVGKTTAAVTLAREFFGDSWQMNFRELNASDERGID 84          
BLAST of CF504307 vs. ExPASy Swiss-Prot
Match: RFCS_METMA (Replication factor C small subunit OS=Methanosarcina mazei GN=rfcS PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 3.277e-14
Identity = 36/83 (43.37%), Postives = 52/83 (62.65%), Query Frame = 3
Query:  219 IKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQ-YHNMILELNASDDRGID 464
            IK   W+EKYRP  L  VA   + ++ +    +   LPHLL  GPPG GKT++ +++AR+++G   +     ELNASD+RGID
Sbjct:   10 IKEEIWIEKYRPVRLNQVAGQEETIERLMSYVATKNLPHLLFSGPPGVGKTASAVSIAREIFGEDLWRENFTELNASDERGID 92          
BLAST of CF504307 vs. ExPASy Swiss-Prot
Match: RFCS_METHJ (Replication factor C small subunit OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=rfcS PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 3.277e-14
Identity = 33/77 (42.86%), Postives = 51/77 (66.23%), Query Frame = 3
Query:  234 WVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGID 464
            W+EKYRP+ L D+   ++I++ +    ++  +PHLL  G  GTGKT+  +A+AR+ +G  +     ELNASD+RGID
Sbjct:    8 WIEKYRPRVLEDIIGQQEIIERLRSYVAKREMPHLLFTGNAGTGKTTAAVALAREFFGEDWQMNFRELNASDERGID 84          
BLAST of CF504307 vs. ExPASy Swiss-Prot
Match: RFCS_METAC (Replication factor C small subunit OS=Methanosarcina acetivorans GN=rfcS PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 3.277e-14
Identity = 36/83 (43.37%), Postives = 52/83 (62.65%), Query Frame = 3
Query:  219 IKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQ-YHNMILELNASDDRGID 464
            IK   W+EKYRP  L  VA   + ++ +    +   LPHLL  GPPG GKT++ +++AR+++G   +     ELNASD+RGID
Sbjct:   10 IKEEIWIEKYRPVRLNQVAGQDETIERLKSYVATKNLPHLLFSGPPGVGKTASAVSIAREIFGEDLWRENFTELNASDERGID 92          
The following BLAST results are available for this feature:
BLAST of CF504307 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 66
Match NameE-valueIdentityDescription
RFCS2_PYRAR2.964e-1548.05Replication factor C small subunit 2 OS=Pyrobaculu... [more]
RFCS1_PYRAR2.964e-1548.05Replication factor C small subunit 1 OS=Pyrobaculu... [more]
RFCS_PICTO5.056e-1548.05Replication factor C small subunit OS=Picrophilus ... [more]
RFCS_METST6.603e-1549.37Replication factor C small subunit OS=Methanosphae... [more]
RFC2_DROME6.603e-1543.59Replication factor C subunit 2 OS=Drosophila melan... [more]
RFCS_METBF1.921e-1443.37Replication factor C small subunit OS=Methanosarci... [more]
RFCS_METB62.509e-1445.45Replication factor C small subunit OS=Methanoregul... [more]
RFCS_METMA3.277e-1443.37Replication factor C small subunit OS=Methanosarci... [more]
RFCS_METHJ3.277e-1442.86Replication factor C small subunit OS=Methanospiri... [more]
RFCS_METAC3.277e-1443.37Replication factor C small subunit OS=Methanosarci... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-796 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-16_G07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504307 ID=CF504307; Name=CF504307; organism=Citrus sinensis; type=EST; length=464bp
TGCAGTGGCAGTGAGCGTACCCTCAACTGTGAATCGAGCAGCGAAAGGCG
GGCGAGAGAGAGAGAGAGAGAGAGAGAGAGCAAGAGAGAGCGAGGCCAGC
AAACAAAATGGCGGAAGCGGAAACGGTGTCGCTTATGGACATCGACGAAG
ACGAGAACAAGAACTTGAAACCAAAAGACAACGGGAAAAACGTCATCGTT
TCAGGCACGCCACCCGACATTAAAGCCTCTCCTTGGGTCGAAAAGTACCG
ACCTCAGTCCCTCGCTGACGTGGCCGCTCATCGTGACATTGTTGATACCA
TTGATAGGTTGACTAGCGAGAACAGACTGCCCCATCTTCTGCTGTATGGT
CCTCCCGGCACAGGCAAAACATCTACCATTCTTGCTGTTGCACGGAAGCT
TTATGGAGCACAATATCACAATATGATTCTGGAGCTGAATGCGTCTGATG
ATAGAGGAATTGAC
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