CF504307
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF504307 vs. ExPASy Swiss-Prot
Match: RFCS2_PYRAR (Replication factor C small subunit 2 OS=Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321) GN=rfcS2 PE=3 SV=1) HSP 1 Score: 80.8777 bits (198), Expect = 2.964e-15 Identity = 37/77 (48.05%), Postives = 49/77 (63.64%), Query Frame = 3 Query: 234 WVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGID 464 W EKYRP+S +V ++ + +PHLL YGPPGTGKT+ L +AR+LYG + LELNASD+RGI+ Sbjct: 6 WFEKYRPRSFDEVVDLEEVKARLREFVRGGNMPHLLFYGPPGTGKTTMALVLARELYGEYWRENTLELNASDERGIN 82
BLAST of CF504307 vs. ExPASy Swiss-Prot
Match: RFCS1_PYRAR (Replication factor C small subunit 1 OS=Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321) GN=rfcS1 PE=3 SV=1) HSP 1 Score: 80.8777 bits (198), Expect = 2.964e-15 Identity = 37/77 (48.05%), Postives = 49/77 (63.64%), Query Frame = 3 Query: 234 WVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGID 464 W EKYRP+S +V ++ + +PHLL YGPPGTGKT+ L +AR+LYG + LELNASD+RGI+ Sbjct: 6 WFEKYRPRSFDEVVDLEEVKARLREFVRGGNMPHLLFYGPPGTGKTTMALVLARELYGEYWRENTLELNASDERGIN 82
BLAST of CF504307 vs. ExPASy Swiss-Prot
Match: RFCS_PICTO (Replication factor C small subunit OS=Picrophilus torridus GN=rfcS PE=3 SV=1) HSP 1 Score: 80.1073 bits (196), Expect = 5.056e-15 Identity = 37/77 (48.05%), Postives = 49/77 (63.64%), Query Frame = 3 Query: 234 WVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGID 464 W EKYRP+ L DV + ++T+ LPHL+ GP GTGKTST +A+ +L+G + LELNASD+RGID Sbjct: 5 WTEKYRPKRLDDVIGEDENINTLKSFVKNGDLPHLIFAGPAGTGKTSTAIALTIELFGDDWKENFLELNASDERGID 81
BLAST of CF504307 vs. ExPASy Swiss-Prot
Match: RFCS_METST (Replication factor C small subunit OS=Methanosphaera stadtmanae (strain DSM 3091) GN=rfcS PE=3 SV=1) HSP 1 Score: 79.7221 bits (195), Expect = 6.603e-15 Identity = 39/79 (49.37%), Postives = 49/79 (62.03%), Query Frame = 3 Query: 228 SPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGID 464 +PWVEKYRPQ+L DV IV + R E LP+++ G G GKT+ LA+A+ L G + LELNASD RGID Sbjct: 3 TPWVEKYRPQTLDDVVGQEQIVGRLKRYVEEKSLPNIMFTGFAGVGKTTCALALAKSLLGEYWQQNFLELNASDARGID 81
BLAST of CF504307 vs. ExPASy Swiss-Prot
Match: RFC2_DROME (Replication factor C subunit 2 OS=Drosophila melanogaster GN=RfC4 PE=1 SV=1) HSP 1 Score: 79.7221 bits (195), Expect = 6.603e-15 Identity = 34/78 (43.59%), Postives = 50/78 (64.10%), Query Frame = 3 Query: 231 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGID 464 PW+EKYRP ++ + D V + ++ P++++ GPPG GKT+TI +AR L G Y +LELNAS++RGID Sbjct: 17 PWIEKYRPVKFKEIVGNEDTVARLSVFATQGNAPNIIIAGPPGVGKTTTIQCLARILLGDSYKEAVLELNASNERGID 94
BLAST of CF504307 vs. ExPASy Swiss-Prot
Match: RFCS_METBF (Replication factor C small subunit OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rfcS PE=3 SV=1) HSP 1 Score: 78.1814 bits (191), Expect = 1.921e-14 Identity = 36/83 (43.37%), Postives = 52/83 (62.65%), Query Frame = 3 Query: 219 IKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQ-YHNMILELNASDDRGID 464 IK W+EKYRP L VA + ++ + + LPHLL GPPG GKT++ +++AR+++G + ELNASD+RGID Sbjct: 6 IKEEIWIEKYRPVRLDQVAGQEETIERLKSYVATKNLPHLLFSGPPGVGKTASAVSIAREIFGEDLWRENFTELNASDERGID 88
BLAST of CF504307 vs. ExPASy Swiss-Prot
Match: RFCS_METB6 (Replication factor C small subunit OS=Methanoregula boonei (strain 6A8) GN=rfcS PE=3 SV=1) HSP 1 Score: 77.7962 bits (190), Expect = 2.509e-14 Identity = 35/77 (45.45%), Postives = 46/77 (59.74%), Query Frame = 3 Query: 234 WVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGID 464 W+EKYRP LAD+ DIV+ + LPHLL G G GKT+ + +AR+ +G + ELNASD+RGID Sbjct: 8 WIEKYRPAKLADIVGQDDIVERLSSYVKSGNLPHLLFTGSAGVGKTTAAVTLAREFFGDSWQMNFRELNASDERGID 84
BLAST of CF504307 vs. ExPASy Swiss-Prot
Match: RFCS_METMA (Replication factor C small subunit OS=Methanosarcina mazei GN=rfcS PE=3 SV=1) HSP 1 Score: 77.411 bits (189), Expect = 3.277e-14 Identity = 36/83 (43.37%), Postives = 52/83 (62.65%), Query Frame = 3 Query: 219 IKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQ-YHNMILELNASDDRGID 464 IK W+EKYRP L VA + ++ + + LPHLL GPPG GKT++ +++AR+++G + ELNASD+RGID Sbjct: 10 IKEEIWIEKYRPVRLNQVAGQEETIERLMSYVATKNLPHLLFSGPPGVGKTASAVSIAREIFGEDLWRENFTELNASDERGID 92
BLAST of CF504307 vs. ExPASy Swiss-Prot
Match: RFCS_METHJ (Replication factor C small subunit OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=rfcS PE=3 SV=1) HSP 1 Score: 77.411 bits (189), Expect = 3.277e-14 Identity = 33/77 (42.86%), Postives = 51/77 (66.23%), Query Frame = 3 Query: 234 WVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGID 464 W+EKYRP+ L D+ ++I++ + ++ +PHLL G GTGKT+ +A+AR+ +G + ELNASD+RGID Sbjct: 8 WIEKYRPRVLEDIIGQQEIIERLRSYVAKREMPHLLFTGNAGTGKTTAAVALAREFFGEDWQMNFRELNASDERGID 84
BLAST of CF504307 vs. ExPASy Swiss-Prot
Match: RFCS_METAC (Replication factor C small subunit OS=Methanosarcina acetivorans GN=rfcS PE=3 SV=1) HSP 1 Score: 77.411 bits (189), Expect = 3.277e-14 Identity = 36/83 (43.37%), Postives = 52/83 (62.65%), Query Frame = 3 Query: 219 IKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQ-YHNMILELNASDDRGID 464 IK W+EKYRP L VA + ++ + + LPHLL GPPG GKT++ +++AR+++G + ELNASD+RGID Sbjct: 10 IKEEIWIEKYRPVRLNQVAGQDETIERLKSYVATKNLPHLLFSGPPGVGKTASAVSIAREIFGEDLWRENFTELNASDERGID 92 The following BLAST results are available for this feature:
BLAST of CF504307 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 66
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Sequences
The
following sequences are available for this feature:
EST sequence >CF504307 ID=CF504307; Name=CF504307; organism=Citrus sinensis; type=EST; length=464bpback to top |