CF504307

Overview
NameCF504307
Unique NameCF504307
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length464
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504307 vs. ExPASy Swiss-Prot
Match: RFCS_METKA (Replication factor C small subunit OS=Methanopyrus kandleri GN=rfcS PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.626e-13
Identity = 33/72 (45.83%), Postives = 47/72 (65.28%), Query Frame = 3
Query:  231 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNAS 446
            PWVEKYRP+ L D+     +V+ +    +   +P+LL  GPPGTGKT+  L +AR+L+G  + +  LELNAS
Sbjct:   12 PWVEKYRPKRLDDIVDQEHVVERLKAYVNRGDMPNLLFAGPPGTGKTTAALCLARELFGEHWRDNFLELNAS 83          
BLAST of CF504307 vs. ExPASy Swiss-Prot
Match: RFCS_METMJ (Replication factor C small subunit OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=rfcS PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 3.623e-13
Identity = 33/77 (42.86%), Postives = 47/77 (61.04%), Query Frame = 3
Query:  234 WVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGID 464
            W+EKYRP+ L ++   +DIV  +        LPHLL  G  G GKT+  +A+AR+ +G  +     E+NASD+RGID
Sbjct:    8 WIEKYRPRRLDEMVGQKDIVVRLQSYVKTGNLPHLLFTGSAGIGKTTAAVALAREFFGDSWQTNFREMNASDERGID 84          
BLAST of CF504307 vs. ExPASy Swiss-Prot
Match: RFCS_THEVO (Replication factor C small subunit OS=Thermoplasma volcanium GN=rfcS PE=3 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 6.180e-13
Identity = 32/77 (41.56%), Postives = 49/77 (63.64%), Query Frame = 3
Query:  234 WVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGID 464
            W EKYRP+SL+++    + +  +     +  LPHLL  G  GTGKTST +A+A +L+G  +    +E+NAS++ GID
Sbjct:    5 WTEKYRPKSLSEIYGEDENIQKLKSFVEKKELPHLLFAGSVGTGKTSTAIALAIELFGESWKENFIEMNASNENGID 81          
BLAST of CF504307 vs. ExPASy Swiss-Prot
Match: RFCS_THEAC (Replication factor C small subunit OS=Thermoplasma acidophilum GN=rfcS PE=3 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 1.377e-12
Identity = 31/77 (40.26%), Postives = 50/77 (64.94%), Query Frame = 3
Query:  234 WVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGID 464
            W EKYRP+SL+++    + +  +     +  +PHLL  G  GTGKTST +A+A +L+G  +   ++E+NAS++ GID
Sbjct:    5 WTEKYRPKSLSEIYGEDENIQKLKSFVEKKEIPHLLFAGSVGTGKTSTAIALAIELFGDSWKENMVEMNASNENGID 81          
BLAST of CF504307 vs. ExPASy Swiss-Prot
Match: RFCS1_MIMIV (Putative replication factor C small subunit R395 OS=Acanthamoeba polyphaga mimivirus GN=MIMI_R395 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.166e-11
Identity = 31/77 (40.26%), Postives = 47/77 (61.04%), Query Frame = 3
Query:  231 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGI 461
            PW+EKYRP ++ DV    +I   I+    +    HL++ G PG GKTST+  +A++L G       LE+NA++DRG+
Sbjct:    6 PWIEKYRPVNIDDVIIDDNISKQINIFLQDRENVHLIITGSPGVGKTSTVRCIAKELLGEDMSQGYLEINAAEDRGV 82          
BLAST of CF504307 vs. ExPASy Swiss-Prot
Match: RFC4_ENCCU (Replication factor C subunit 4 OS=Encephalitozoon cuniculi GN=RFC4 PE=1 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 4.429e-11
Identity = 32/76 (42.11%), Postives = 47/76 (61.84%), Query Frame = 3
Query:  237 VEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGID 464
            V KY+P  + D+  +   ++ +  +     +PHLL  GPPGTGKT+    +AR+L G +    +LELNASD+RGID
Sbjct:    5 VNKYQPSEIQDIVGNEATMELVSLMIESRDMPHLLFTGPPGTGKTTCAKILARRLLGNK--EGLLELNASDERGID 78          
The following BLAST results are available for this feature:
BLAST of CF504307 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 66
Match NameE-valueIdentityDescription
RFCS_METKA1.626e-1345.83Replication factor C small subunit OS=Methanopyrus... [more]
RFCS_METMJ3.623e-1342.86Replication factor C small subunit OS=Methanoculle... [more]
RFCS_THEVO6.180e-1341.56Replication factor C small subunit OS=Thermoplasma... [more]
RFCS_THEAC1.377e-1240.26Replication factor C small subunit OS=Thermoplasma... [more]
RFCS1_MIMIV1.166e-1140.26Putative replication factor C small subunit R395 O... [more]
RFC4_ENCCU4.429e-1142.11Replication factor C subunit 4 OS=Encephalitozoon ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-796 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-16_G07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504307 ID=CF504307; Name=CF504307; organism=Citrus sinensis; type=EST; length=464bp
TGCAGTGGCAGTGAGCGTACCCTCAACTGTGAATCGAGCAGCGAAAGGCG
GGCGAGAGAGAGAGAGAGAGAGAGAGAGAGCAAGAGAGAGCGAGGCCAGC
AAACAAAATGGCGGAAGCGGAAACGGTGTCGCTTATGGACATCGACGAAG
ACGAGAACAAGAACTTGAAACCAAAAGACAACGGGAAAAACGTCATCGTT
TCAGGCACGCCACCCGACATTAAAGCCTCTCCTTGGGTCGAAAAGTACCG
ACCTCAGTCCCTCGCTGACGTGGCCGCTCATCGTGACATTGTTGATACCA
TTGATAGGTTGACTAGCGAGAACAGACTGCCCCATCTTCTGCTGTATGGT
CCTCCCGGCACAGGCAAAACATCTACCATTCTTGCTGTTGCACGGAAGCT
TTATGGAGCACAATATCACAATATGATTCTGGAGCTGAATGCGTCTGATG
ATAGAGGAATTGAC
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