CF504307
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF504307 vs. ExPASy Swiss-Prot
Match: RFCS_METKA (Replication factor C small subunit OS=Methanopyrus kandleri GN=rfcS PE=3 SV=1) HSP 1 Score: 75.0998 bits (183), Expect = 1.626e-13 Identity = 33/72 (45.83%), Postives = 47/72 (65.28%), Query Frame = 3 Query: 231 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNAS 446 PWVEKYRP+ L D+ +V+ + + +P+LL GPPGTGKT+ L +AR+L+G + + LELNAS Sbjct: 12 PWVEKYRPKRLDDIVDQEHVVERLKAYVNRGDMPNLLFAGPPGTGKTTAALCLARELFGEHWRDNFLELNAS 83
BLAST of CF504307 vs. ExPASy Swiss-Prot
Match: RFCS_METMJ (Replication factor C small subunit OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=rfcS PE=3 SV=1) HSP 1 Score: 73.9442 bits (180), Expect = 3.623e-13 Identity = 33/77 (42.86%), Postives = 47/77 (61.04%), Query Frame = 3 Query: 234 WVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGID 464 W+EKYRP+ L ++ +DIV + LPHLL G G GKT+ +A+AR+ +G + E+NASD+RGID Sbjct: 8 WIEKYRPRRLDEMVGQKDIVVRLQSYVKTGNLPHLLFTGSAGIGKTTAAVALAREFFGDSWQTNFREMNASDERGID 84
BLAST of CF504307 vs. ExPASy Swiss-Prot
Match: RFCS_THEVO (Replication factor C small subunit OS=Thermoplasma volcanium GN=rfcS PE=3 SV=2) HSP 1 Score: 73.1738 bits (178), Expect = 6.180e-13 Identity = 32/77 (41.56%), Postives = 49/77 (63.64%), Query Frame = 3 Query: 234 WVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGID 464 W EKYRP+SL+++ + + + + LPHLL G GTGKTST +A+A +L+G + +E+NAS++ GID Sbjct: 5 WTEKYRPKSLSEIYGEDENIQKLKSFVEKKELPHLLFAGSVGTGKTSTAIALAIELFGESWKENFIEMNASNENGID 81
BLAST of CF504307 vs. ExPASy Swiss-Prot
Match: RFCS_THEAC (Replication factor C small subunit OS=Thermoplasma acidophilum GN=rfcS PE=3 SV=2) HSP 1 Score: 72.0182 bits (175), Expect = 1.377e-12 Identity = 31/77 (40.26%), Postives = 50/77 (64.94%), Query Frame = 3 Query: 234 WVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGID 464 W EKYRP+SL+++ + + + + +PHLL G GTGKTST +A+A +L+G + ++E+NAS++ GID Sbjct: 5 WTEKYRPKSLSEIYGEDENIQKLKSFVEKKEIPHLLFAGSVGTGKTSTAIALAIELFGDSWKENMVEMNASNENGID 81
BLAST of CF504307 vs. ExPASy Swiss-Prot
Match: RFCS1_MIMIV (Putative replication factor C small subunit R395 OS=Acanthamoeba polyphaga mimivirus GN=MIMI_R395 PE=3 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 1.166e-11 Identity = 31/77 (40.26%), Postives = 47/77 (61.04%), Query Frame = 3 Query: 231 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGI 461 PW+EKYRP ++ DV +I I+ + HL++ G PG GKTST+ +A++L G LE+NA++DRG+ Sbjct: 6 PWIEKYRPVNIDDVIIDDNISKQINIFLQDRENVHLIITGSPGVGKTSTVRCIAKELLGEDMSQGYLEINAAEDRGV 82
BLAST of CF504307 vs. ExPASy Swiss-Prot
Match: RFC4_ENCCU (Replication factor C subunit 4 OS=Encephalitozoon cuniculi GN=RFC4 PE=1 SV=1) HSP 1 Score: 67.0106 bits (162), Expect = 4.429e-11 Identity = 32/76 (42.11%), Postives = 47/76 (61.84%), Query Frame = 3 Query: 237 VEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGID 464 V KY+P + D+ + ++ + + +PHLL GPPGTGKT+ +AR+L G + +LELNASD+RGID Sbjct: 5 VNKYQPSEIQDIVGNEATMELVSLMIESRDMPHLLFTGPPGTGKTTCAKILARRLLGNK--EGLLELNASDERGID 78 The following BLAST results are available for this feature:
BLAST of CF504307 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 66
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Sequences
The
following sequences are available for this feature:
EST sequence >CF504307 ID=CF504307; Name=CF504307; organism=Citrus sinensis; type=EST; length=464bpback to top |