CF831961

Overview
NameCF831961
Unique NameCF831961
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length682
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig999 contig Csv1_Contig999:1..682. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF831961 vs. ExPASy Swiss-Prot
Match: UCRI_CHICK (Cytochrome b-c1 complex subunit Rieske, mitochondrial OS=Gallus gallus GN=UQCRFS1 PE=1 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.847e-16
Identity = 52/152 (34.21%), Postives = 78/152 (51.32%), Query Frame = 1
Query:  262 ESLTTRN-EESLVPGV----PATVAAVKNPTSKIVYDEYNHERYPPGDPS-------KRAFAYFVLTGGRFVYASLIRLLILKFVLSMSASKDVLAMASLEVDLSSIEPGSTVTVKWRGKPVFITRRTEEDIKLANSVDLGSLRDPQQDAER 681
            ES++ R+    LV G+    PA+V  V N  +   +  Y  E       S       ++ F+Y V        A   + ++ +F+ S+SAS DVLA++ +E+ LS I  G  V  KWRGKP+F+  RT+ +I     VD+  LRDPQ D +R
Sbjct:   51 ESMSGRSARRDLVAGISLNAPASVRYVHNDVTVPDFSAYRREDVMDATTSSQTSSEDRKGFSYLVTATACVATAYAAKNVVTQFISSLSASADVLALSKIEIKLSDIPEGKNVAFKWRGKPLFVRHRTQAEINQEAEVDVSKLRDPQHDLDR 202          
BLAST of CF831961 vs. ExPASy Swiss-Prot
Match: UCRI_CERAE (Cytochrome b-c1 complex subunit Rieske, mitochondrial OS=Cercopithecus aethiops GN=UQCRFS1 PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.847e-16
Identity = 51/135 (37.78%), Postives = 76/135 (56.30%), Query Frame = 1
Query:  304 VPATVAAVKNPTSKIVYDEYNHERYPPGDPSK---------RAFAYFVLTGGRFVYASLIRLLILKFVLSMSASKDVLAMASLEVDLSSIEPGSTVTVKWRGKPVFITRRTEEDIKLANSVDLGSLRDPQQDAER 681
            VPA+V    + T   V D Y++ R    D +K         + F+Y V        A   + ++ +F+ SMSAS DVLAMA +E++LS I  G  +  KWRGKP+F+  RT+++I+   +V+L  LRDPQ D +R
Sbjct:   72 VPASVCY--SHTDVKVPDFYDYRRLEVLDSTKSSRESSEARKGFSYLVTAVTTVGVAYAAKNVVTQFISSMSASADVLAMAKIEINLSDIPEGKNMAFKWRGKPLFVRHRTQKEIEEEAAVELSQLRDPQHDLDR 204          
BLAST of CF831961 vs. ExPASy Swiss-Prot
Match: UCRI_THEGE (Cytochrome b-c1 complex subunit Rieske, mitochondrial OS=Theropithecus gelada GN=UQCRFS1 PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.719e-16
Identity = 51/135 (37.78%), Postives = 75/135 (55.56%), Query Frame = 1
Query:  304 VPATVAAVKNPTSKIVYDEYNHERYPPGDPSK---------RAFAYFVLTGGRFVYASLIRLLILKFVLSMSASKDVLAMASLEVDLSSIEPGSTVTVKWRGKPVFITRRTEEDIKLANSVDLGSLRDPQQDAER 681
            VPA+V    + T   V D Y++ R    D +K         + F+Y V        A   +  + +F+ SMSAS DVLAMA +E++LS I  G  +  KWRGKP+F+  RT+++I+   +V+L  LRDPQ D +R
Sbjct:   72 VPASVCY--SHTDVKVPDFYDYRRLEVLDSTKSSRESSEARKGFSYLVTAVTTVGVAYAAKNAVTQFISSMSASADVLAMAKIEINLSDIPEGKNMAFKWRGKPLFVRHRTQKEIEQEAAVELSQLRDPQHDLDR 204          
BLAST of CF831961 vs. ExPASy Swiss-Prot
Match: UCRI_RHORU (Ubiquinol-cytochrome c reductase iron-sulfur subunit OS=Rhodospirillum rubrum GN=petA PE=1 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 6.343e-16
Identity = 47/108 (43.52%), Postives = 64/108 (59.26%), Query Frame = 1
Query:  358 EYNHERYPPGDPSKRAFAYFVLTGGRFVYASLIRLLILKFVLSMSASKDVLAMASLEVDLSSIEPGSTVTVKWRGKPVFITRRTEEDIKLANSVDLGSLRDPQQDAER 681
            E  H    PG  S R    F++ G   V A  + L +  F+  M+ + D LA+AS EVD+S+I  G  +TV WRGKPVF+  RT+++I +A +VD  SLRDPQ D  R
Sbjct:    3 EAEHTASTPGGESSRRD--FLIYGTTAVGAVGVALAVWPFIDFMNPAADTLALASTEVDVSAIAEGQAITVTWRGKPVFVRHRTQKEIVVARAVDPASLRDPQTDEAR 108          
BLAST of CF831961 vs. ExPASy Swiss-Prot
Match: UCRI_PONPY (Cytochrome b-c1 complex subunit Rieske, mitochondrial OS=Pongo pygmaeus GN=UQCRFS1 PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 6.343e-16
Identity = 41/96 (42.71%), Postives = 62/96 (64.58%), Query Frame = 1
Query:  394 SKRAFAYFVLTGGRFVYASLIRLLILKFVLSMSASKDVLAMASLEVDLSSIEPGSTVTVKWRGKPVFITRRTEEDIKLANSVDLGSLRDPQQDAER 681
            +++ F+Y V        A   + ++ +FV SMSAS DVLA+A +E+ LS I  G  +T KWRGKP+F+  RT+++I+   +V+L  LRDPQ D +R
Sbjct:  109 ARKGFSYLVTGVTTVGVAYAAKNVVTQFVSSMSASADVLALAKIEIKLSDIPEGKNMTFKWRGKPLFVRHRTQKEIEQEAAVELSQLRDPQHDLDR 204          
BLAST of CF831961 vs. ExPASy Swiss-Prot
Match: UCRI_COLPO (Cytochrome b-c1 complex subunit Rieske, mitochondrial OS=Colobus polykomos GN=UQCRFS1 PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 6.343e-16
Identity = 42/96 (43.75%), Postives = 61/96 (63.54%), Query Frame = 1
Query:  394 SKRAFAYFVLTGGRFVYASLIRLLILKFVLSMSASKDVLAMASLEVDLSSIEPGSTVTVKWRGKPVFITRRTEEDIKLANSVDLGSLRDPQQDAER 681
            ++++F+Y V        A   +  + +FV SMSAS DVLAMA +EV LS I  G  +  KWRGKP+F+  RT+++I+   +V+L  LRDPQ D +R
Sbjct:  109 ARKSFSYMVTAVTTVGVAYAAKNAVTQFVSSMSASADVLAMAKIEVKLSDIPEGKNMAFKWRGKPLFVRHRTQKEIEQEAAVELSQLRDPQHDLDR 204          
BLAST of CF831961 vs. ExPASy Swiss-Prot
Match: UCRI_LAGLA (Cytochrome b-c1 complex subunit Rieske, mitochondrial OS=Lagothrix lagotricha GN=UQCRFS1 PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.082e-15
Identity = 39/96 (40.62%), Postives = 60/96 (62.50%), Query Frame = 1
Query:  394 SKRAFAYFVLTGGRFVYASLIRLLILKFVLSMSASKDVLAMASLEVDLSSIEPGSTVTVKWRGKPVFITRRTEEDIKLANSVDLGSLRDPQQDAER 681
            +++ F+Y V            + ++ +FV SMSAS DVLAM+ +E+ LS I  G  +  KWRGKP+F+  RT+++I+   +V+L  LRDPQ D +R
Sbjct:  109 ARKGFSYLVTAATAVGVTYAAKSIVTQFVSSMSASADVLAMSKIEIKLSDIPEGKNMAFKWRGKPLFVRHRTQKEIEQEAAVELSQLRDPQHDLDR 204          
BLAST of CF831961 vs. ExPASy Swiss-Prot
Match: UCRIL_HUMAN (Cytochrome b-c1 complex subunit Rieske-like protein 1 OS=Homo sapiens GN=UQCRFSL1 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.413e-15
Identity = 41/96 (42.71%), Postives = 60/96 (62.50%), Query Frame = 1
Query:  394 SKRAFAYFVLTGGRFVYASLIRLLILKFVLSMSASKDVLAMASLEVDLSSIEPGSTVTVKWRGKPVFITRRTEEDIKLANSVDLGSLRDPQQDAER 681
            +++ F+Y V        A   +  + +FV SMSAS DVLA+A +E+ LS I  G  +  KWRGKP+F+  RT+++IK   +V+L  LRDPQ D +R
Sbjct:  118 ARKGFSYLVTGVTTVGVAYAAKNAVTQFVSSMSASADVLALAKIEIKLSDIPEGKNMAFKWRGKPLFVRHRTQKEIKQEAAVELSQLRDPQHDLDR 213          
BLAST of CF831961 vs. ExPASy Swiss-Prot
Match: UCRI_AOTAZ (Cytochrome b-c1 complex subunit Rieske, mitochondrial OS=Aotus azarai GN=UQCRFS1 PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.846e-15
Identity = 39/96 (40.62%), Postives = 60/96 (62.50%), Query Frame = 1
Query:  394 SKRAFAYFVLTGGRFVYASLIRLLILKFVLSMSASKDVLAMASLEVDLSSIEPGSTVTVKWRGKPVFITRRTEEDIKLANSVDLGSLRDPQQDAER 681
            +++ F+Y V            + ++ +FV SMSAS DVLAM+ +E+ LS I  G  +  KWRGKP+F+  RT+++I+   +V+L  LRDPQ D +R
Sbjct:  109 ARKGFSYLVTATTAVGVTYAAKSIVTQFVSSMSASADVLAMSKIEIKLSDIPEGKNMAFKWRGKPLFVRHRTQKEIEQEAAVELSQLRDPQHDLDR 204          
BLAST of CF831961 vs. ExPASy Swiss-Prot
Match: UCRI_SAISC (Cytochrome b-c1 complex subunit Rieske, mitochondrial OS=Saimiri sciureus GN=UQCRFS1 PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.410e-15
Identity = 38/96 (39.58%), Postives = 60/96 (62.50%), Query Frame = 1
Query:  394 SKRAFAYFVLTGGRFVYASLIRLLILKFVLSMSASKDVLAMASLEVDLSSIEPGSTVTVKWRGKPVFITRRTEEDIKLANSVDLGSLRDPQQDAER 681
            +++ F+Y V            + ++ +F+ SMSAS DVLAM+ +E+ LS I  G  +  KWRGKP+F+  RT+++I+   +V+L  LRDPQ D +R
Sbjct:  109 ARKVFSYMVTATTAVGVTYAAKSIVTQFISSMSASADVLAMSKIEIKLSDIPEGKNMAFKWRGKPLFVRHRTQKEIEQEAAVELSQLRDPQHDLDR 204          
The following BLAST results are available for this feature:
BLAST of CF831961 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 36
Match NameE-valueIdentityDescription
UCRI_CHICK2.847e-1634.21Cytochrome b-c1 complex subunit Rieske, mitochondr... [more]
UCRI_CERAE2.847e-1637.78Cytochrome b-c1 complex subunit Rieske, mitochondr... [more]
UCRI_THEGE3.719e-1637.78Cytochrome b-c1 complex subunit Rieske, mitochondr... [more]
UCRI_RHORU6.343e-1643.52Ubiquinol-cytochrome c reductase iron-sulfur subun... [more]
UCRI_PONPY6.343e-1642.71Cytochrome b-c1 complex subunit Rieske, mitochondr... [more]
UCRI_COLPO6.343e-1643.75Cytochrome b-c1 complex subunit Rieske, mitochondr... [more]
UCRI_LAGLA1.082e-1540.63Cytochrome b-c1 complex subunit Rieske, mitochondr... [more]
UCRIL_HUMAN1.413e-1542.71Cytochrome b-c1 complex subunit Rieske-like protei... [more]
UCRI_AOTAZ1.846e-1540.63Cytochrome b-c1 complex subunit Rieske, mitochondr... [more]
UCRI_SAISC2.410e-1539.58Cytochrome b-c1 complex subunit Rieske, mitochondr... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01B12_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01B12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF831961 ID=CF831961; Name=CF831961; organism=Citrus sinensis; type=EST; length=682bp
CGAAAAGCGAGCCATCGATAACACCAATCGCCATTTCGAAGAGATAATCA
GAGACAGATTTTGAAGATGTTGAGGGTCGCGGCGAGAAGGCTCTTATCAC
CATCCTCATCATCGTCATTGAGGCCCATCGCATCGTCTCGGAATATAATT
AACGGCGCCGGTTCATCGTCCTCCTCCAACGATGATTTCAGATCCAACGG
CTTCTATGGCTCCGGATATCTTGGACCTCAGTATCAACTTCCTTGCCGAG
GTTTTTCTTCTGAGTCACTGACAACAAGAAATGAAGAAAGCCTGGTTCCA
GGTGTTCCAGCAACAGTGGCAGCTGTTAAGAATCCCACTTCTAAGATAGT
ATATGATGAATACAATCATGAACGTTATCCTCCAGGTGACCCCAGCAAGC
GGGCATTTGCCTACTTTGTCCTGACTGGTGGTAGGTTTGTGTATGCTTCA
CTCATCCGTCTACTTATCCTTAAATTTGTACTGAGCATGTCAGCGAGTAA
GGATGTTCTTGCTATGGCCTCTCTTGAGGTTGATCTGTCCAGCATTGAGC
CAGGCAGCACAGTGACTGTTAAGTGGCGGGGCAAGCCAGTTTTCATCACA
CGTCGGACTGAGGAAGATATCAAGCTGGCCAACAGTGTTGATTTGGGATC
TCTTCGTGATCCTCAGCAAGACGCTGAGAGGG
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