CF831961

Overview
NameCF831961
Unique NameCF831961
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length682
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig999 contig Csv1_Contig999:1..682. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF831961 vs. ExPASy Swiss-Prot
Match: UCRI_HYLSY (Cytochrome b-c1 complex subunit Rieske, mitochondrial OS=Hylobates syndactylus GN=UQCRFS1 PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.410e-15
Identity = 40/96 (41.67%), Postives = 60/96 (62.50%), Query Frame = 1
Query:  394 SKRAFAYFVLTGGRFVYASLIRLLILKFVLSMSASKDVLAMASLEVDLSSIEPGSTVTVKWRGKPVFITRRTEEDIKLANSVDLGSLRDPQQDAER 681
            +++ F+Y V        A   +  + +FV SMSAS DVLA+A +E+ LS I  G  +  KWRGKP+F+  RT+++I+   +V+L  LRDPQ D +R
Sbjct:  109 ARKGFSYLVTAVTTVGVAYAAKNAVTQFVSSMSASADVLALAKIEIKLSDIPEGKNMAFKWRGKPLFVRHRTQKEIEQEAAVELSQLRDPQHDLDR 204          
BLAST of CF831961 vs. ExPASy Swiss-Prot
Match: UCRI_BOVIN (Cytochrome b-c1 complex subunit Rieske, mitochondrial OS=Bos taurus GN=UQCRFS1 PE=1 SV=3)

HSP 1 Score: 82.0333 bits (201), Expect = 3.148e-15
Identity = 40/96 (41.67%), Postives = 60/96 (62.50%), Query Frame = 1
Query:  394 SKRAFAYFVLTGGRFVYASLIRLLILKFVLSMSASKDVLAMASLEVDLSSIEPGSTVTVKWRGKPVFITRRTEEDIKLANSVDLGSLRDPQQDAER 681
            +++ F+Y V        A   + ++ +FV SMSAS DVLAM+ +E+ LS I  G  +  KWRGKP+F+  RT+++I    +V++  LRDPQ D ER
Sbjct:  109 ARKGFSYLVTATTTVGVAYAAKNVVSQFVSSMSASADVLAMSKIEIKLSDIPEGKNMAFKWRGKPLFVRHRTKKEIDQEAAVEVSQLRDPQHDLER 204          
BLAST of CF831961 vs. ExPASy Swiss-Prot
Match: UCRI_PANTR (Cytochrome b-c1 complex subunit Rieske, mitochondrial OS=Pan troglodytes GN=UQCRFS1 PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.111e-15
Identity = 40/96 (41.67%), Postives = 60/96 (62.50%), Query Frame = 1
Query:  394 SKRAFAYFVLTGGRFVYASLIRLLILKFVLSMSASKDVLAMASLEVDLSSIEPGSTVTVKWRGKPVFITRRTEEDIKLANSVDLGSLRDPQQDAER 681
            +++ F+Y V        A   +  + +FV SMSAS DVLA+A +E+ LS I  G  +  KWRGKP+F+  RT+++I+   +V+L  LRDPQ D +R
Sbjct:  109 ARKGFSYLVTGVTTVGVAYAAKNAVTQFVSSMSASADVLALAKIEIKLSDIPEGKNMAFKWRGKPLFVRHRTQKEIEQEAAVELSQLRDPQHDLDR 204          
BLAST of CF831961 vs. ExPASy Swiss-Prot
Match: UCRI_PANPA (Cytochrome b-c1 complex subunit Rieske, mitochondrial OS=Pan paniscus GN=UQCRFS1 PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.111e-15
Identity = 40/96 (41.67%), Postives = 60/96 (62.50%), Query Frame = 1
Query:  394 SKRAFAYFVLTGGRFVYASLIRLLILKFVLSMSASKDVLAMASLEVDLSSIEPGSTVTVKWRGKPVFITRRTEEDIKLANSVDLGSLRDPQQDAER 681
            +++ F+Y V        A   +  + +FV SMSAS DVLA+A +E+ LS I  G  +  KWRGKP+F+  RT+++I+   +V+L  LRDPQ D +R
Sbjct:  109 ARKGFSYLVTGVTTVGVAYAAKNAVTQFVSSMSASADVLALAKIEIKLSDIPEGKNMAFKWRGKPLFVRHRTQKEIEQEAAVELSQLRDPQHDLDR 204          
BLAST of CF831961 vs. ExPASy Swiss-Prot
Match: UCRI_HUMAN (Cytochrome b-c1 complex subunit Rieske, mitochondrial OS=Homo sapiens GN=UQCRFS1 PE=1 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 4.111e-15
Identity = 40/96 (41.67%), Postives = 60/96 (62.50%), Query Frame = 1
Query:  394 SKRAFAYFVLTGGRFVYASLIRLLILKFVLSMSASKDVLAMASLEVDLSSIEPGSTVTVKWRGKPVFITRRTEEDIKLANSVDLGSLRDPQQDAER 681
            +++ F+Y V        A   +  + +FV SMSAS DVLA+A +E+ LS I  G  +  KWRGKP+F+  RT+++I+   +V+L  LRDPQ D +R
Sbjct:  109 ARKGFSYLVTGVTTVGVAYAAKNAVTQFVSSMSASADVLALAKIEIKLSDIPEGKNMAFKWRGKPLFVRHRTQKEIEQEAAVELSQLRDPQHDLDR 204          
BLAST of CF831961 vs. ExPASy Swiss-Prot
Match: UCRI_GORGO (Cytochrome b-c1 complex subunit Rieske, mitochondrial OS=Gorilla gorilla gorilla GN=UQCRFS1 PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.111e-15
Identity = 40/96 (41.67%), Postives = 60/96 (62.50%), Query Frame = 1
Query:  394 SKRAFAYFVLTGGRFVYASLIRLLILKFVLSMSASKDVLAMASLEVDLSSIEPGSTVTVKWRGKPVFITRRTEEDIKLANSVDLGSLRDPQQDAER 681
            +++ F+Y V        A   +  + +FV SMSAS DVLA+A +E+ LS I  G  +  KWRGKP+F+  RT+++I+   +V+L  LRDPQ D +R
Sbjct:  109 ARKGFSYLVTGVTTVGVAYAAKNAVTQFVSSMSASADVLALAKIEIKLSDIPEGKNMAFKWRGKPLFVRHRTQKEIEQEAAVELSQLRDPQHDLDR 204          
BLAST of CF831961 vs. ExPASy Swiss-Prot
Match: UCRI_RAT (Cytochrome b-c1 complex subunit Rieske, mitochondrial OS=Rattus norvegicus GN=Uqcrfs1 PE=1 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 5.370e-15
Identity = 40/96 (41.67%), Postives = 59/96 (61.46%), Query Frame = 1
Query:  394 SKRAFAYFVLTGGRFVYASLIRLLILKFVLSMSASKDVLAMASLEVDLSSIEPGSTVTVKWRGKPVFITRRTEEDIKLANSVDLGSLRDPQQDAER 681
            +++ F+Y V        A   +  + +FV SMSAS DVLAM+ +E+ LS I  G  +  KWRGKP+F+  RT+++I    +V++  LRDPQ D ER
Sbjct:  109 ARKGFSYLVTATTTVGVAYAAKNAVSQFVSSMSASADVLAMSKIEIKLSDIPEGKNMAFKWRGKPLFVRHRTKKEIDQEAAVEVSQLRDPQHDLER 204          
BLAST of CF831961 vs. ExPASy Swiss-Prot
Match: UCRI_MOUSE (Cytochrome b-c1 complex subunit Rieske, mitochondrial OS=Mus musculus GN=Uqcrfs1 PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 7.013e-15
Identity = 39/96 (40.62%), Postives = 60/96 (62.50%), Query Frame = 1
Query:  394 SKRAFAYFVLTGGRFVYASLIRLLILKFVLSMSASKDVLAMASLEVDLSSIEPGSTVTVKWRGKPVFITRRTEEDIKLANSVDLGSLRDPQQDAER 681
            +++ F+Y V        A   + ++ +FV SMSAS DVLAM+ +E+ LS I  G  +  KWRGKP+F+  RT+++I    +V++  LRDPQ D +R
Sbjct:  109 ARKGFSYLVTATTTVGVAYAAKNVVSQFVSSMSASADVLAMSKIEIKLSDIPEGKNMAFKWRGKPLFVRHRTKKEIDQEAAVEVSQLRDPQHDLDR 204          
BLAST of CF831961 vs. ExPASy Swiss-Prot
Match: UCRI_RICBR (Ubiquinol-cytochrome c reductase iron-sulfur subunit OS=Rickettsia bellii (strain RML369-C) GN=petA PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.041e-14
Identity = 45/109 (41.28%), Postives = 64/109 (58.72%), Query Frame = 1
Query:  355 DEYNHERYPPGDPSKRAFAYFVLTGGRFVYASLIRLLILKFVLSMSASKDVLAMASLEVDLSSIEPGSTVTVKWRGKPVFITRRTEEDIKLANSVDLGSLRDPQQDAER 681
            D  N  +    D SK +   F++     V A      +   + S++ S DVLA++S+EVDLS+I  G TVTVKW+GKPVFIT RT + I  A +V +  L DP++D +R
Sbjct:    6 DTNNDNKVEFEDRSKTSRRDFMVLTASSVAAVGAACTLWPLINSLNPSADVLALSSIEVDLSNIAVGQTVTVKWQGKPVFITNRTPDKIAEARAVKMSELIDPEEDQDR 114          
BLAST of CF831961 vs. ExPASy Swiss-Prot
Match: UCRI_RHOCA (Ubiquinol-cytochrome c reductase iron-sulfur subunit OS=Rhodobacter capsulatus GN=petA PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.041e-14
Identity = 39/58 (67.24%), Postives = 49/58 (84.48%), Query Frame = 1
Query:  487 MSASKDVLAMASLEVDLSSIEPGSTVTVKWRGKPVFITRRTEEDIKLANSVDLGSLRD 660
            M+AS DV AMAS+ VD+S++E G+ +TVKWRGKPVFI RR E+DI+LA SV LG+LRD
Sbjct:   38 MNASADVKAMASIFVDVSAVEVGTQLTVKWRGKPVFIRRRDEKDIELARSVPLGALRD 95          
The following BLAST results are available for this feature:
BLAST of CF831961 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 36
Match NameE-valueIdentityDescription
UCRI_HYLSY2.410e-1541.67Cytochrome b-c1 complex subunit Rieske, mitochondr... [more]
UCRI_BOVIN3.148e-1541.67Cytochrome b-c1 complex subunit Rieske, mitochondr... [more]
UCRI_PANTR4.111e-1541.67Cytochrome b-c1 complex subunit Rieske, mitochondr... [more]
UCRI_PANPA4.111e-1541.67Cytochrome b-c1 complex subunit Rieske, mitochondr... [more]
UCRI_HUMAN4.111e-1541.67Cytochrome b-c1 complex subunit Rieske, mitochondr... [more]
UCRI_GORGO4.111e-1541.67Cytochrome b-c1 complex subunit Rieske, mitochondr... [more]
UCRI_RAT5.370e-1541.67Cytochrome b-c1 complex subunit Rieske, mitochondr... [more]
UCRI_MOUSE7.013e-1540.63Cytochrome b-c1 complex subunit Rieske, mitochondr... [more]
UCRI_RICBR2.041e-1441.28Ubiquinol-cytochrome c reductase iron-sulfur subun... [more]
UCRI_RHOCA2.041e-1467.24Ubiquinol-cytochrome c reductase iron-sulfur subun... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01B12_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01B12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF831961 ID=CF831961; Name=CF831961; organism=Citrus sinensis; type=EST; length=682bp
CGAAAAGCGAGCCATCGATAACACCAATCGCCATTTCGAAGAGATAATCA
GAGACAGATTTTGAAGATGTTGAGGGTCGCGGCGAGAAGGCTCTTATCAC
CATCCTCATCATCGTCATTGAGGCCCATCGCATCGTCTCGGAATATAATT
AACGGCGCCGGTTCATCGTCCTCCTCCAACGATGATTTCAGATCCAACGG
CTTCTATGGCTCCGGATATCTTGGACCTCAGTATCAACTTCCTTGCCGAG
GTTTTTCTTCTGAGTCACTGACAACAAGAAATGAAGAAAGCCTGGTTCCA
GGTGTTCCAGCAACAGTGGCAGCTGTTAAGAATCCCACTTCTAAGATAGT
ATATGATGAATACAATCATGAACGTTATCCTCCAGGTGACCCCAGCAAGC
GGGCATTTGCCTACTTTGTCCTGACTGGTGGTAGGTTTGTGTATGCTTCA
CTCATCCGTCTACTTATCCTTAAATTTGTACTGAGCATGTCAGCGAGTAA
GGATGTTCTTGCTATGGCCTCTCTTGAGGTTGATCTGTCCAGCATTGAGC
CAGGCAGCACAGTGACTGTTAAGTGGCGGGGCAAGCCAGTTTTCATCACA
CGTCGGACTGAGGAAGATATCAAGCTGGCCAACAGTGTTGATTTGGGATC
TCTTCGTGATCCTCAGCAAGACGCTGAGAGGG
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