CF831961

Overview
NameCF831961
Unique NameCF831961
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length682
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig999 contig Csv1_Contig999:1..682. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF831961 vs. ExPASy Swiss-Prot
Match: UCRI_RICTY (Ubiquinol-cytochrome c reductase iron-sulfur subunit OS=Rickettsia typhi GN=petA PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.727e-13
Identity = 37/66 (56.06%), Postives = 49/66 (74.24%), Query Frame = 1
Query:  484 SMSASKDVLAMASLEVDLSSIEPGSTVTVKWRGKPVFITRRTEEDIKLANSVDLGSLRDPQQDAER 681
            S++ S DVLA++S+EVDLSSI  G TVTVKW+GKP+FIT RT + I  A +V +  L DP++D  R
Sbjct:   40 SLNPSTDVLALSSIEVDLSSIAIGQTVTVKWQGKPIFITNRTPDGIASARAVKMSELIDPEKDEVR 105          
BLAST of CF831961 vs. ExPASy Swiss-Prot
Match: UCRI_RICPR (Ubiquinol-cytochrome c reductase iron-sulfur subunit OS=Rickettsia prowazekii GN=petA PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.727e-13
Identity = 36/66 (54.55%), Postives = 49/66 (74.24%), Query Frame = 1
Query:  484 SMSASKDVLAMASLEVDLSSIEPGSTVTVKWRGKPVFITRRTEEDIKLANSVDLGSLRDPQQDAER 681
            S + S DVLA++S+EVDLS+I  G TVTVKW+GKP+FIT RT ++I  A +V +  L DP++D  R
Sbjct:   40 SFNPSADVLALSSIEVDLSNIAIGQTVTVKWQGKPIFITNRTHDEIAAARAVKMSELIDPERDEVR 105          
BLAST of CF831961 vs. ExPASy Swiss-Prot
Match: UCRI_RICFE (Ubiquinol-cytochrome c reductase iron-sulfur subunit OS=Rickettsia felis GN=petA PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.848e-13
Identity = 37/66 (56.06%), Postives = 48/66 (72.73%), Query Frame = 1
Query:  484 SMSASKDVLAMASLEVDLSSIEPGSTVTVKWRGKPVFITRRTEEDIKLANSVDLGSLRDPQQDAER 681
            S++ S DVLA++S+EVDLS+I  G TVTVKW+GKPVFIT RT + I  A +V +  L DP+ D  R
Sbjct:   40 SLNPSADVLALSSIEVDLSNIAVGQTVTVKWQGKPVFITNRTPDKIAEARAVKMSELIDPETDEAR 105          
BLAST of CF831961 vs. ExPASy Swiss-Prot
Match: UCRI_RICCN (Ubiquinol-cytochrome c reductase iron-sulfur subunit OS=Rickettsia conorii GN=petA PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.848e-13
Identity = 37/66 (56.06%), Postives = 48/66 (72.73%), Query Frame = 1
Query:  484 SMSASKDVLAMASLEVDLSSIEPGSTVTVKWRGKPVFITRRTEEDIKLANSVDLGSLRDPQQDAER 681
            S++ S DVLA++S+EVDLS+I  G TVTVKW+GKPVFIT RT + I  A +V +  L DP+ D  R
Sbjct:   40 SLNPSADVLALSSIEVDLSNIAVGQTVTVKWQGKPVFITNRTPDKIAEARAVKMSELIDPEADQAR 105          
BLAST of CF831961 vs. ExPASy Swiss-Prot
Match: UCRI_PARDE (Ubiquinol-cytochrome c reductase iron-sulfur subunit OS=Paracoccus denitrificans GN=petA PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.848e-13
Identity = 39/89 (43.82%), Postives = 55/89 (61.80%), Query Frame = 1
Query:  394 SKRAFAYFVLTGGRFVYASLIRLLILKFVLSMSASKDVLAMASLEVDLSSIEPGSTVTVKWRGKPVFITRRTEEDIKLANSVDLGSLRD 660
            ++R F Y+   G   V A      ++     M+ S DV A+AS++VD+S +E G+ +TVKW GKPVFI RRTE++I+    VDLG L D
Sbjct:   14 TRRDFLYYATAGAGTVAAGAAAWTLVN---QMNPSADVQALASIQVDVSGVETGTQLTVKWLGKPVFIRRRTEDEIQAGREVDLGQLID 99          
BLAST of CF831961 vs. ExPASy Swiss-Prot
Match: UCRI_RHOSH (Ubiquinol-cytochrome c reductase iron-sulfur subunit OS=Rhodobacter sphaeroides GN=petA PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.910e-12
Identity = 40/89 (44.94%), Postives = 54/89 (60.67%), Query Frame = 1
Query:  394 SKRAFAYFVLTGGRFVYASLIRLLILKFVLSMSASKDVLAMASLEVDLSSIEPGSTVTVKWRGKPVFITRRTEEDIKLANSVDLGSLRD 660
            ++R F Y+   G   V        +   +  M+ S DV A+AS+ VD+SS+EPG  +TVK+ GKP+FI RRTE DI+L  SV LG L D
Sbjct:   10 TRRDFLYYATAGAGAVATGAA---VWPLINQMNPSADVQALASIFVDVSSVEPGVQLTVKFLGKPIFIRRRTEADIELGRSVQLGQLVD 95          
The following BLAST results are available for this feature:
BLAST of CF831961 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 36
Match NameE-valueIdentityDescription
UCRI_RICTY1.727e-1356.06Ubiquinol-cytochrome c reductase iron-sulfur subun... [more]
UCRI_RICPR1.727e-1354.55Ubiquinol-cytochrome c reductase iron-sulfur subun... [more]
UCRI_RICFE3.848e-1356.06Ubiquinol-cytochrome c reductase iron-sulfur subun... [more]
UCRI_RICCN3.848e-1356.06Ubiquinol-cytochrome c reductase iron-sulfur subun... [more]
UCRI_PARDE3.848e-1343.82Ubiquinol-cytochrome c reductase iron-sulfur subun... [more]
UCRI_RHOSH1.910e-1244.94Ubiquinol-cytochrome c reductase iron-sulfur subun... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01B12_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01B12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF831961 ID=CF831961; Name=CF831961; organism=Citrus sinensis; type=EST; length=682bp
CGAAAAGCGAGCCATCGATAACACCAATCGCCATTTCGAAGAGATAATCA
GAGACAGATTTTGAAGATGTTGAGGGTCGCGGCGAGAAGGCTCTTATCAC
CATCCTCATCATCGTCATTGAGGCCCATCGCATCGTCTCGGAATATAATT
AACGGCGCCGGTTCATCGTCCTCCTCCAACGATGATTTCAGATCCAACGG
CTTCTATGGCTCCGGATATCTTGGACCTCAGTATCAACTTCCTTGCCGAG
GTTTTTCTTCTGAGTCACTGACAACAAGAAATGAAGAAAGCCTGGTTCCA
GGTGTTCCAGCAACAGTGGCAGCTGTTAAGAATCCCACTTCTAAGATAGT
ATATGATGAATACAATCATGAACGTTATCCTCCAGGTGACCCCAGCAAGC
GGGCATTTGCCTACTTTGTCCTGACTGGTGGTAGGTTTGTGTATGCTTCA
CTCATCCGTCTACTTATCCTTAAATTTGTACTGAGCATGTCAGCGAGTAA
GGATGTTCTTGCTATGGCCTCTCTTGAGGTTGATCTGTCCAGCATTGAGC
CAGGCAGCACAGTGACTGTTAAGTGGCGGGGCAAGCCAGTTTTCATCACA
CGTCGGACTGAGGAAGATATCAAGCTGGCCAACAGTGTTGATTTGGGATC
TCTTCGTGATCCTCAGCAAGACGCTGAGAGGG
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