CF831998
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RL19_RHOPB (50S ribosomal protein L19 OS=Rhodopseudomonas palustris (strain BisB18) GN=rplS PE=3 SV=1) HSP 1 Score: 85.5001 bits (210), Expect = 3.308e-16 Identity = 46/105 (43.81%), Postives = 68/105 (64.76%), Query Frame = 1 Query: 379 HIMQILDKEAVENVKSQREIPDIKPGYIVQLKVVIPENKR-RVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRD 690 +++Q L+KE + + + + IP+ PG V + V + E +R RV +G+ I R GI+ +F +R++ G GVE +FPL SP I IKV+ + KVRRAKLYYLRD Sbjct: 2 NLIQELEKEQFDKLSAGKVIPEFGPGDTVIVNVKVVEGERSRVQAYEGVCIGRSGGGINESFTVRKISYGEGVERVFPLLSPMIDSIKVVRRGKVRRAKLYYLRD 106
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RL19_RHOP5 (50S ribosomal protein L19 OS=Rhodopseudomonas palustris (strain BisA53) GN=rplS PE=3 SV=1) HSP 1 Score: 85.5001 bits (210), Expect = 3.308e-16 Identity = 46/105 (43.81%), Postives = 68/105 (64.76%), Query Frame = 1 Query: 379 HIMQILDKEAVENVKSQREIPDIKPGYIVQLKVVIPENKR-RVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRD 690 +++Q L+KE + + + R IP+ PG V + V + E +R RV +G+ I R GI+ +F +R++ G GVE +FPL SP I IKV+ + KVRRAKLYYLR+ Sbjct: 2 NLIQTLEKEQFDKLSAGRVIPEFGPGDTVIVNVKVVEGERSRVQAYEGVCIGRSGGGINESFTVRKISYGEGVERVFPLLSPMIDSIKVVRRGKVRRAKLYYLRN 106
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RL19_RHISN (50S ribosomal protein L19 OS=Rhizobium sp. (strain NGR234) GN=rplS PE=3 SV=1) HSP 1 Score: 85.5001 bits (210), Expect = 3.308e-16 Identity = 42/106 (39.62%), Postives = 69/106 (65.09%), Query Frame = 1 Query: 379 HIMQILDKEAVENVKSQREIPDIKPGYIVQLKVVIPENKR-RVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRDK 693 +I++ L+ E + ++R +PD G V++ V + E R RV +G+ IAR G++ +F +R++ G GVE +FP+YSP + ++V+ + KVRRAKLYYLRD+ Sbjct: 2 NIIEQLEAEQAAKIAAKRTLPDFSAGDTVRVNVRVVEGSRTRVQAYEGVCIARSGGGLNESFTVRKISYGEGVERVFPVYSPLVESVEVVRRGKVRRAKLYYLRDR 107
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RL19_BIFAA (50S ribosomal protein L19 OS=Bifidobacterium adolescentis (strain ATCC 15703 / DSM 20083) GN=rplS PE=3 SV=2) HSP 1 Score: 85.5001 bits (210), Expect = 3.308e-16 Identity = 45/94 (47.87%), Postives = 62/94 (65.96%), Query Frame = 1 Query: 412 ENVKSQREIPDIKPGYIVQLKVVIPE-NKRRVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRD 690 +++K EIP +PG V++ V I E N R+ G+VIAR+ G+ TF +R++ G GVE FPL+SP I IKV+ K +VRRAKLYYLR+ Sbjct: 11 KHMKPAEEIPAFRPGDTVEVNVKIKEGNNSRIQAFTGVVIARQGGGVRETFVVRKISFGTGVERRFPLHSPAIDSIKVVRKGRVRRAKLYYLRN 104
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RL19_TRIEI (50S ribosomal protein L19 OS=Trichodesmium erythraeum (strain IMS101) GN=rplS PE=3 SV=1) HSP 1 Score: 85.1149 bits (209), Expect = 4.320e-16 Identity = 49/111 (44.14%), Postives = 73/111 (65.77%), Query Frame = 1 Query: 373 ARHIMQILDKEAVENVK--SQREIPDIKPGYIVQLKVVIPEN-KRRVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRDKL 696 A+ I+ ++ E +E +K S+++IP + G V++ V I E K RV +G +IA RN GI+ T +RR+ GVGVE +F L+SP I IK++ + KVRRAKLYYLR ++ Sbjct: 3 AQEIISSIEAEEIEKLKQNSKKKIPLLYVGDTVKVGVKIIEGGKERVQPYEGTIIAMRNGGINETITVRRVFQGVGVERVFLLHSPRIANIKLIRRGKVRRAKLYYLRGRV 113
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RL19_RALSO (50S ribosomal protein L19 OS=Ralstonia solanacearum GN=rplS PE=3 SV=1) HSP 1 Score: 85.1149 bits (209), Expect = 4.320e-16 Identity = 41/106 (38.68%), Postives = 73/106 (68.87%), Query Frame = 1 Query: 379 HIMQILDKEAVENVKSQREIPDIKPGYIVQLKV-VIPENKRRVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRDK 693 ++++ +++E ++ + + + IP PG V + V V+ N++RV +G+VIA+RN G++++F +R++ +G GVE F LYSP + I+V + VRRAKLYYLR++ Sbjct: 2 NLIEQIEQEEIKRLTANKTIPPFAPGDTVIVNVNVVEGNRKRVQAYEGVVIAKRNRGLNSSFIVRKISSGEGVERTFQLYSPLLASIEVKRRGDVRRAKLYYLRER 107
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RL19_PHEZH (50S ribosomal protein L19 OS=Phenylobacterium zucineum (strain HLK1) GN=rplS PE=3 SV=1) HSP 1 Score: 85.1149 bits (209), Expect = 4.320e-16 Identity = 44/106 (41.51%), Postives = 68/106 (64.15%), Query Frame = 1 Query: 379 HIMQILDKEAVENVKSQREIPDIKPGYIVQLKVVIPENKR-RVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRDK 693 ++++ L KE + + +QR++P+ +PG V++ V I E R RV +G+ IAR G+ F +R++ G GVE +FP+ SP I I+V + VRRAKLYYLRD+ Sbjct: 2 NVIEQLRKEEADRLLAQRKVPEFRPGDTVRVNVRIKEGDRERVQAYEGVCIARAGQGVDENFTVRKISFGEGVERVFPILSPMIESIEVKRRGVVRRAKLYYLRDR 107
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RL19_CUPTR (50S ribosomal protein L19 OS=Cupriavidus taiwanensis (strain R1 / LMG 19424) GN=rplS PE=3 SV=1) HSP 1 Score: 85.1149 bits (209), Expect = 4.320e-16 Identity = 43/106 (40.57%), Postives = 71/106 (66.98%), Query Frame = 1 Query: 379 HIMQILDKEAVENVKSQREIPDIKPGYIVQLKV-VIPENKRRVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRDK 693 ++++ ++KE + + + + IP PG V + V V+ N++RV +G+VIA+RN G++++F +R++ +G GVE F LYSP I I+V + VRRAKLYYLR + Sbjct: 2 NLIEQIEKEEIARLTANKTIPAFAPGDTVVVSVNVVEGNRKRVQAYEGVVIAKRNRGLNSSFIVRKISSGEGVERTFQLYSPLIAGIEVKRRGDVRRAKLYYLRQR 107
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RL19_COXBU (50S ribosomal protein L19 OS=Coxiella burnetii GN=rplS PE=3 SV=1) HSP 1 Score: 85.1149 bits (209), Expect = 4.320e-16 Identity = 46/105 (43.81%), Postives = 71/105 (67.62%), Query Frame = 1 Query: 379 HIMQILDKEAVENVKSQREIPDIKPGYIVQLKVVIPE-NKRRVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRD 690 +I+Q+L+ E + +EIPD + G V ++V + E N+ R+ +G+VIARR+ G++++F +R++ G GVE +F LYSP I IKV + VRRAKLYYLR+ Sbjct: 3 NIIQLLETEQTQG----KEIPDFRAGDTVTVQVKVKEGNRERLQAFEGVVIARRHRGLNSSFTVRKVSHGEGVERVFQLYSPLIASIKVNRRGDVRRAKLYYLRN 103
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RL19_COXBR (50S ribosomal protein L19 OS=Coxiella burnetii (strain RSA 331 / Henzerling II) GN=rplS PE=3 SV=1) HSP 1 Score: 85.1149 bits (209), Expect = 4.320e-16 Identity = 46/105 (43.81%), Postives = 71/105 (67.62%), Query Frame = 1 Query: 379 HIMQILDKEAVENVKSQREIPDIKPGYIVQLKVVIPE-NKRRVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRD 690 +I+Q+L+ E + +EIPD + G V ++V + E N+ R+ +G+VIARR+ G++++F +R++ G GVE +F LYSP I IKV + VRRAKLYYLR+ Sbjct: 3 NIIQLLETEQTQG----KEIPDFRAGDTVTVQVKVKEGNRERLQAFEGVVIARRHRGLNSSFTVRKVSHGEGVERVFQLYSPLIASIKVNRRGDVRRAKLYYLRN 103 The following BLAST results are available for this feature:
BLAST of CF831998 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CF831998 ID=CF831998; Name=CF831998; organism=Citrus sinensis; type=EST; length=741bpback to top |