CF831998

Overview
NameCF831998
Unique NameCF831998
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length741
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RL19_RHOPB (50S ribosomal protein L19 OS=Rhodopseudomonas palustris (strain BisB18) GN=rplS PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.308e-16
Identity = 46/105 (43.81%), Postives = 68/105 (64.76%), Query Frame = 1
Query:  379 HIMQILDKEAVENVKSQREIPDIKPGYIVQLKVVIPENKR-RVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRD 690
            +++Q L+KE  + + + + IP+  PG  V + V + E +R RV   +G+ I R   GI+ +F +R++  G GVE +FPL SP I  IKV+ + KVRRAKLYYLRD
Sbjct:    2 NLIQELEKEQFDKLSAGKVIPEFGPGDTVIVNVKVVEGERSRVQAYEGVCIGRSGGGINESFTVRKISYGEGVERVFPLLSPMIDSIKVVRRGKVRRAKLYYLRD 106          
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RL19_RHOP5 (50S ribosomal protein L19 OS=Rhodopseudomonas palustris (strain BisA53) GN=rplS PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.308e-16
Identity = 46/105 (43.81%), Postives = 68/105 (64.76%), Query Frame = 1
Query:  379 HIMQILDKEAVENVKSQREIPDIKPGYIVQLKVVIPENKR-RVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRD 690
            +++Q L+KE  + + + R IP+  PG  V + V + E +R RV   +G+ I R   GI+ +F +R++  G GVE +FPL SP I  IKV+ + KVRRAKLYYLR+
Sbjct:    2 NLIQTLEKEQFDKLSAGRVIPEFGPGDTVIVNVKVVEGERSRVQAYEGVCIGRSGGGINESFTVRKISYGEGVERVFPLLSPMIDSIKVVRRGKVRRAKLYYLRN 106          
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RL19_RHISN (50S ribosomal protein L19 OS=Rhizobium sp. (strain NGR234) GN=rplS PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.308e-16
Identity = 42/106 (39.62%), Postives = 69/106 (65.09%), Query Frame = 1
Query:  379 HIMQILDKEAVENVKSQREIPDIKPGYIVQLKVVIPENKR-RVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRDK 693
            +I++ L+ E    + ++R +PD   G  V++ V + E  R RV   +G+ IAR   G++ +F +R++  G GVE +FP+YSP +  ++V+ + KVRRAKLYYLRD+
Sbjct:    2 NIIEQLEAEQAAKIAAKRTLPDFSAGDTVRVNVRVVEGSRTRVQAYEGVCIARSGGGLNESFTVRKISYGEGVERVFPVYSPLVESVEVVRRGKVRRAKLYYLRDR 107          
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RL19_BIFAA (50S ribosomal protein L19 OS=Bifidobacterium adolescentis (strain ATCC 15703 / DSM 20083) GN=rplS PE=3 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 3.308e-16
Identity = 45/94 (47.87%), Postives = 62/94 (65.96%), Query Frame = 1
Query:  412 ENVKSQREIPDIKPGYIVQLKVVIPE-NKRRVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRD 690
            +++K   EIP  +PG  V++ V I E N  R+    G+VIAR+  G+  TF +R++  G GVE  FPL+SP I  IKV+ K +VRRAKLYYLR+
Sbjct:   11 KHMKPAEEIPAFRPGDTVEVNVKIKEGNNSRIQAFTGVVIARQGGGVRETFVVRKISFGTGVERRFPLHSPAIDSIKVVRKGRVRRAKLYYLRN 104          
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RL19_TRIEI (50S ribosomal protein L19 OS=Trichodesmium erythraeum (strain IMS101) GN=rplS PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 4.320e-16
Identity = 49/111 (44.14%), Postives = 73/111 (65.77%), Query Frame = 1
Query:  373 ARHIMQILDKEAVENVK--SQREIPDIKPGYIVQLKVVIPEN-KRRVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRDKL 696
            A+ I+  ++ E +E +K  S+++IP +  G  V++ V I E  K RV   +G +IA RN GI+ T  +RR+  GVGVE +F L+SP I  IK++ + KVRRAKLYYLR ++
Sbjct:    3 AQEIISSIEAEEIEKLKQNSKKKIPLLYVGDTVKVGVKIIEGGKERVQPYEGTIIAMRNGGINETITVRRVFQGVGVERVFLLHSPRIANIKLIRRGKVRRAKLYYLRGRV 113          
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RL19_RALSO (50S ribosomal protein L19 OS=Ralstonia solanacearum GN=rplS PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 4.320e-16
Identity = 41/106 (38.68%), Postives = 73/106 (68.87%), Query Frame = 1
Query:  379 HIMQILDKEAVENVKSQREIPDIKPGYIVQLKV-VIPENKRRVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRDK 693
            ++++ +++E ++ + + + IP   PG  V + V V+  N++RV   +G+VIA+RN G++++F +R++ +G GVE  F LYSP +  I+V  +  VRRAKLYYLR++
Sbjct:    2 NLIEQIEQEEIKRLTANKTIPPFAPGDTVIVNVNVVEGNRKRVQAYEGVVIAKRNRGLNSSFIVRKISSGEGVERTFQLYSPLLASIEVKRRGDVRRAKLYYLRER 107          
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RL19_PHEZH (50S ribosomal protein L19 OS=Phenylobacterium zucineum (strain HLK1) GN=rplS PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 4.320e-16
Identity = 44/106 (41.51%), Postives = 68/106 (64.15%), Query Frame = 1
Query:  379 HIMQILDKEAVENVKSQREIPDIKPGYIVQLKVVIPENKR-RVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRDK 693
            ++++ L KE  + + +QR++P+ +PG  V++ V I E  R RV   +G+ IAR   G+   F +R++  G GVE +FP+ SP I  I+V  +  VRRAKLYYLRD+
Sbjct:    2 NVIEQLRKEEADRLLAQRKVPEFRPGDTVRVNVRIKEGDRERVQAYEGVCIARAGQGVDENFTVRKISFGEGVERVFPILSPMIESIEVKRRGVVRRAKLYYLRDR 107          
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RL19_CUPTR (50S ribosomal protein L19 OS=Cupriavidus taiwanensis (strain R1 / LMG 19424) GN=rplS PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 4.320e-16
Identity = 43/106 (40.57%), Postives = 71/106 (66.98%), Query Frame = 1
Query:  379 HIMQILDKEAVENVKSQREIPDIKPGYIVQLKV-VIPENKRRVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRDK 693
            ++++ ++KE +  + + + IP   PG  V + V V+  N++RV   +G+VIA+RN G++++F +R++ +G GVE  F LYSP I  I+V  +  VRRAKLYYLR +
Sbjct:    2 NLIEQIEKEEIARLTANKTIPAFAPGDTVVVSVNVVEGNRKRVQAYEGVVIAKRNRGLNSSFIVRKISSGEGVERTFQLYSPLIAGIEVKRRGDVRRAKLYYLRQR 107          
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RL19_COXBU (50S ribosomal protein L19 OS=Coxiella burnetii GN=rplS PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 4.320e-16
Identity = 46/105 (43.81%), Postives = 71/105 (67.62%), Query Frame = 1
Query:  379 HIMQILDKEAVENVKSQREIPDIKPGYIVQLKVVIPE-NKRRVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRD 690
            +I+Q+L+ E  +     +EIPD + G  V ++V + E N+ R+   +G+VIARR+ G++++F +R++  G GVE +F LYSP I  IKV  +  VRRAKLYYLR+
Sbjct:    3 NIIQLLETEQTQG----KEIPDFRAGDTVTVQVKVKEGNRERLQAFEGVVIARRHRGLNSSFTVRKVSHGEGVERVFQLYSPLIASIKVNRRGDVRRAKLYYLRN 103          
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RL19_COXBR (50S ribosomal protein L19 OS=Coxiella burnetii (strain RSA 331 / Henzerling II) GN=rplS PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 4.320e-16
Identity = 46/105 (43.81%), Postives = 71/105 (67.62%), Query Frame = 1
Query:  379 HIMQILDKEAVENVKSQREIPDIKPGYIVQLKVVIPE-NKRRVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRD 690
            +I+Q+L+ E  +     +EIPD + G  V ++V + E N+ R+   +G+VIARR+ G++++F +R++  G GVE +F LYSP I  IKV  +  VRRAKLYYLR+
Sbjct:    3 NIIQLLETEQTQG----KEIPDFRAGDTVTVQVKVKEGNRERLQAFEGVVIARRHRGLNSSFTVRKVSHGEGVERVFQLYSPLIASIKVNRRGDVRRAKLYYLRN 103          
The following BLAST results are available for this feature:
BLAST of CF831998 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL19_RHOPB3.308e-1643.8150S ribosomal protein L19 OS=Rhodopseudomonas palu... [more]
RL19_RHOP53.308e-1643.8150S ribosomal protein L19 OS=Rhodopseudomonas palu... [more]
RL19_RHISN3.308e-1639.6250S ribosomal protein L19 OS=Rhizobium sp. (strain... [more]
RL19_BIFAA3.308e-1647.8750S ribosomal protein L19 OS=Bifidobacterium adole... [more]
RL19_TRIEI4.320e-1644.1450S ribosomal protein L19 OS=Trichodesmium erythra... [more]
RL19_RALSO4.320e-1638.6850S ribosomal protein L19 OS=Ralstonia solanacearu... [more]
RL19_PHEZH4.320e-1641.5150S ribosomal protein L19 OS=Phenylobacterium zuci... [more]
RL19_CUPTR4.320e-1640.5750S ribosomal protein L19 OS=Cupriavidus taiwanens... [more]
RL19_COXBU4.320e-1643.8150S ribosomal protein L19 OS=Coxiella burnetii GN=... [more]
RL19_COXBR4.320e-1643.8150S ribosomal protein L19 OS=Coxiella burnetii (st... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS02_01C09_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01C09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF831998 ID=CF831998; Name=CF831998; organism=Citrus sinensis; type=EST; length=741bp
GGGAGCATCCGATTAATTCAAAGGCATGCCCTTACCAGCTCAAACACTTG
TTCAATCCCAAACGGAGTCGTTTCAACCAAATCTGTCGGTCATTCGTTCC
ATTCTTTCAACAATTTTCTATCCCGCTCGCTCCACTTGTTAGCTACTCGC
TCGCAGGTAAAATATGGCTATCAAACCGAGTCTTGGGGTTCTTCGAACTA
TTACATTAGAACTAGTGGGCCTGGTTTGTTTCCACCAGCAATGATGGAGC
CACATTTTGCCAACAGGTGTATTTCAACATCGGAAAGTTCAGTTGAATCA
GCTTCATATCCTCCTGCTGCTGCTTCCTCTGATTTGGCTCCCCGCATCAA
ATTTAAGAGGCTTGATAAAACTGCCAGGCATATAATGCAGATTCTAGATA
AGGAAGCAGTGGAGAATGTGAAGTCACAGAGGGAGATCCCCGATATAAAG
CCTGGTTATATCGTGCAACTAAAAGTGGTAATTCCAGAGAACAAGAGACG
TGTTTCAACTTTAAAGGGTATTGTTATAGCAAGGCGTAATGCTGGTATAA
GTACTACATTTAGATTGAGGAGGCTGGTAGCAGGGGTTGGAGTCGAATCT
CTTTTCCCTTTGTACTCACCTAATATACTAGAAATAAAGGTGCTGGACAA
GAAGAAAGTGAGGAGGGCCAAGCTTTACTATCTGAGGGATAAGCTGAATC
CACTTAGAAATAAATAAGAAGCTTTATTGGTGGGAGGATTC
back to top