CF831998
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RK19_SPIOL (50S ribosomal protein L19, chloroplastic OS=Spinacia oleracea GN=RPL19 PE=1 SV=2) HSP 1 Score: 135.576 bits (340), Expect = 2.787e-31 Identity = 66/105 (62.86%), Postives = 86/105 (81.90%), Query Frame = 1 Query: 382 IMQILDKEAVENVKSQREIPDIKPGYIVQLKVVIPENKRRVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRDKL 696 IM IL+K+AV + R +P I+ G IVQ+++ +PENKRR+S KGIVI+R+NAGI TT R+RR++AGVGVE +FPLYSPNI EIKV+ +KVR+A+LYYLRDKL Sbjct: 122 IMGILNKKAVHAAEELRPVPGIRTGDIVQIRLEVPENKRRLSVYKGIVISRQNAGIHTTIRIRRIIAGVGVEIVFPLYSPNIKEIKVVSHRKVRKARLYYLRDKL 226
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RK191_ARATH (50S ribosomal protein L19-1, chloroplastic OS=Arabidopsis thaliana GN=At4g17560 PE=2 SV=1) HSP 1 Score: 134.42 bits (337), Expect = 6.210e-31 Identity = 62/105 (59.05%), Postives = 88/105 (83.81%), Query Frame = 1 Query: 382 IMQILDKEAVENVKSQREIPDIKPGYIVQLKVVIPENKRRVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRDKL 696 +M IL+++A+E + R +P+I+ G IV++K+ +PENKRR+S KGIV++R+NAGI TT R+RR++AG+GVE +FP+YSPNI EIKV+ +KVRRA+LYYLRDKL Sbjct: 114 VMGILNQKAIEVAEKVRPVPEIRTGDIVEIKLEVPENKRRLSIYKGIVMSRQNAGIHTTIRIRRIIAGIGVEIVFPIYSPNIKEIKVVSHRKVRRARLYYLRDKL 218
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RK192_ARATH (50S ribosomal protein L19-2, chloroplastic OS=Arabidopsis thaliana GN=At5g47190 PE=2 SV=1) HSP 1 Score: 134.035 bits (336), Expect = 8.110e-31 Identity = 62/105 (59.05%), Postives = 88/105 (83.81%), Query Frame = 1 Query: 382 IMQILDKEAVENVKSQREIPDIKPGYIVQLKVVIPENKRRVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRDKL 696 IM +L+K+A+E ++ R +P ++ G IV++K+ +PENKRR+S KGIV++R+NAGI TT R+RR++AG+GVE +FP+YSPNI EIKV+ +KVRRA+LYYLRDKL Sbjct: 118 IMGLLNKKAIEVAETVRPVPGLRTGDIVEIKLEVPENKRRLSIYKGIVMSRQNAGIHTTIRIRRIIAGIGVEIVFPIYSPNIKEIKVVSHRKVRRARLYYLRDKL 222
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RL19_MAGSA (50S ribosomal protein L19 OS=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) GN=rplS PE=3 SV=1) HSP 1 Score: 98.2117 bits (243), Expect = 4.932e-20 Identity = 48/106 (45.28%), Postives = 75/106 (70.75%), Query Frame = 1 Query: 379 HIMQILDKEAVENVKSQREIPDIKPGYIVQLKV-VIPENKRRVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRDK 693 +I++ L+KE +E + + R +P PG +++ V VI N+ RV +G+ IAR+N G++++F +R++ G GVE +FPLYSPNI I+V+ + VRRAKLYYLRD+ Sbjct: 3 NIIEQLEKEQIEKLTADRGVPSFAPGDTLKVNVKVIEGNRERVQAYEGVCIARKNDGLNSSFVVRKISYGEGVERIFPLYSPNIASIEVVRRGDVRRAKLYYLRDR 108
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RL19_RHORT (50S ribosomal protein L19 OS=Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255) GN=rplS PE=3 SV=1) HSP 1 Score: 95.1301 bits (235), Expect = 4.175e-19 Identity = 47/106 (44.34%), Postives = 74/106 (69.81%), Query Frame = 1 Query: 379 HIMQILDKEAVENVKSQREIPDIKPGYIVQLKV-VIPENKRRVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRDK 693 +I++ +KE +E + QR +P PG +++ V VI N++RV +G+ IARRNA ++++F +R++ G GVE +FPLY+P I I+V+ + KVRRAKLYYLR + Sbjct: 2 NIIEQFEKEQIEKLLEQRGVPQFSPGDTLRVHVKVIEGNRQRVQVYEGVCIARRNAALNSSFTVRKISFGEGVERIFPLYAPTIDRIEVVRRGKVRRAKLYYLRGR 107
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RL19_ACICJ (50S ribosomal protein L19 OS=Acidiphilium cryptum (strain JF-5) GN=rplS PE=3 SV=1) HSP 1 Score: 94.7449 bits (234), Expect = 5.453e-19 Identity = 46/106 (43.40%), Postives = 70/106 (66.04%), Query Frame = 1 Query: 379 HIMQILDKEAVENVKSQREIPDIKPGYIVQLKVVIPENKR-RVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRDK 693 +++Q +D E + + R +PD KPG +++ V + E +R R+ +G+ IAR N GI++ F +R++ G GVE +FPLYSPN+ EI V + VRRAKLYYLR + Sbjct: 2 NVIQTIDAEQIGKLAEARAVPDFKPGDNLRVSVRVTEGERTRIQAFEGVCIARSNRGINSNFTVRKISYGEGVERVFPLYSPNVTEIAVTRRGVVRRAKLYYLRGR 107
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RL19_THENN (50S ribosomal protein L19 OS=Thermotoga neapolitana (strain ATCC 49049 / DSM 4359 / NS-E) GN=rplS PE=3 SV=1) HSP 1 Score: 93.2041 bits (230), Expect = 1.586e-18 Identity = 52/114 (45.61%), Postives = 79/114 (69.30%), Query Frame = 1 Query: 379 HIMQILDKEAVENVKSQREIPDIKPGYIVQLKV-VIPENKRRVSTLKGIVIARRNAGISTTFRLRRLVA-GVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRDKLNPLRNK 714 H+++I++K+ ++EIPD +PG V++ V VI ++ R +GIVIA+R +GI+ TF +RR+ + GVGVE +FP +SP + +I+V+ K KVRRAKLYYLRD +R K Sbjct: 5 HLVRIIEKKY-----EKKEIPDFRPGDTVRVHVKVIEGDRERTQVFEGIVIAKRGSGINRTFTVRRIGSHGVGVERIFPFHSPVVEKIEVVRKGKVRRAKLYYLRDVKGKIRIK 113
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RL19_CALS8 (50S ribosomal protein L19 OS=Caldicellulosiruptor saccharolyticus (strain ATCC 43494 / DSM 8903) GN=rplS PE=3 SV=1) HSP 1 Score: 93.2041 bits (230), Expect = 1.586e-18 Identity = 46/97 (47.42%), Postives = 69/97 (71.13%), Query Frame = 1 Query: 409 VENVKSQREIPDIKPGYIVQLKV-VIPENKRRVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRDKL 696 +E+ +++IPD KPG V++ VI + R+ +G+VI RR G+S TF +RR+ GVGVE +FPL+SP I +I+V+ + KVRRAKLYY+R+K+ Sbjct: 7 IESEMLRKDIPDFKPGDTVRVHFKVIEGGRERIQAFEGLVIKRRGKGLSETFTVRRISYGVGVERVFPLHSPRIEKIEVIRRGKVRRAKLYYIREKI 103
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RL19_NOVAD (50S ribosomal protein L19 OS=Novosphingobium aromaticivorans (strain DSM 12444) GN=rplS PE=3 SV=1) HSP 1 Score: 92.8189 bits (229), Expect = 2.072e-18 Identity = 48/106 (45.28%), Postives = 72/106 (67.92%), Query Frame = 1 Query: 379 HIMQILDKEAVENVKSQREIPDIKPGYIVQLKVVIPENKR-RVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRDK 693 +++Q L+ EA+ K+++EIPD + G V++ V + E +R RV +G+ IAR N G+ + F +R++ G GVE +FPLYSPNI I V+ + VRRAKLYYLR + Sbjct: 2 NLIQQLEAEAIAEFKAKKEIPDFRAGDTVRVGVRVVEGERTRVQAYEGVCIARSNRGLGSNFTVRKISFGEGVERVFPLYSPNIDSITVVRRGVVRRAKLYYLRGR 107
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RL19_SPHWW (50S ribosomal protein L19 OS=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) GN=rplS PE=3 SV=1) HSP 1 Score: 92.4337 bits (228), Expect = 2.706e-18 Identity = 46/106 (43.40%), Postives = 71/106 (66.98%), Query Frame = 1 Query: 379 HIMQILDKEAVENVKSQREIPDIKPGYIVQLKVVIPENKR-RVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRDK 693 +++Q L+ E + K + IPD +PG +++ V + E +R RV +G+ IAR N G+ ++F +R++ G GVE +FPLYSPN+ I+V+ K VRRAKLYYLR + Sbjct: 2 NLIQQLEAEQIAKFKESKSIPDFRPGDTLRVGVKVVEGERTRVQAYEGVCIARANKGMGSSFTVRKISFGEGVERVFPLYSPNVESIEVVRKGVVRRAKLYYLRGR 107 The following BLAST results are available for this feature:
BLAST of CF831998 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CF831998 ID=CF831998; Name=CF831998; organism=Citrus sinensis; type=EST; length=741bpback to top |