CF831998

Overview
NameCF831998
Unique NameCF831998
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length741
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RL19_LISIN (50S ribosomal protein L19 OS=Listeria innocua GN=rplS PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 7.369e-16
Identity = 45/102 (44.12%), Postives = 68/102 (66.67%), Query Frame = 1
Query:  394 LDKEAVENVKSQR--EIPDIKPGYIVQLKVVIPENKR-RVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRD 690
            ++K   E  KSQ   ++P  +PG  V++   + E  R R+   +G+VI RR AGIS TF +R++  GVGVE  FP+++P I +++V+ + KVRRAKLYYLR+
Sbjct:    1 MNKLIDEITKSQLNPDVPSFRPGDTVRVHAKVVEGTRERIQLFEGVVIKRRGAGISETFTVRKISNGVGVERTFPVHTPRIAKLEVIRRGKVRRAKLYYLRN 102          
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RL19_BREBN (50S ribosomal protein L19 OS=Brevibacillus brevis (strain 47 / JCM 6285 / NBRC 100599) GN=rplS PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 7.369e-16
Identity = 42/97 (43.30%), Postives = 66/97 (68.04%), Query Frame = 1
Query:  409 VENVKSQREIPDIKPGYIVQLKVVIPENKR-RVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRDKL 696
            +E  + +++IP  +PG  V++ V + E +R R+   +G+ I RR  GIS TF  R++  GVGVE  FP+++P I +I+++   KVRRAKLYYLRD++
Sbjct:    8 LEKAQLKQDIPAFRPGDTVRVHVKVIEGQRERIQLFEGVCIRRRGTGISETFTARKISYGVGVERTFPVHTPKIDKIEIVRHGKVRRAKLYYLRDRV 104          
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RL19_BACHD (50S ribosomal protein L19 OS=Bacillus halodurans GN=rplS PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 7.369e-16
Identity = 42/95 (44.21%), Postives = 64/95 (67.37%), Query Frame = 1
Query:  409 VENVKSQREIPDIKPGYIVQLKVVIPENKR-RVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRD 690
            + N + + ++P  +PG  +++ V + E  R R+   +G+VI RR  G+S TF +R++  GVGVE  FPL+SP I +I+V  + KVRRAKLYYLR+
Sbjct:    8 ITNEQLRTDLPSFRPGDTLRVHVKVIEGSRERIQVFEGVVIKRRGTGVSETFTVRKISYGVGVERTFPLHSPKIDKIEVKRRGKVRRAKLYYLRN 102          
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RL19_BACCN (50S ribosomal protein L19 OS=Bacillus cereus subsp. cytotoxis (strain NVH 391-98) GN=rplS PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 7.369e-16
Identity = 45/96 (46.88%), Postives = 65/96 (67.71%), Query Frame = 1
Query:  412 ENVKSQ--REIPDIKPGYIVQLKVVIPENKR-RVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRD 690
            E  KSQ   ++P  +PG  +++ V + E  R R+   +G+VI RR  GIS TF +R++  GVGVE  FP+++P I +I+VL + KVRRAKLYYLR+
Sbjct:    7 EITKSQLKTDLPSFRPGDTLRVHVKVVEGTRERIQIFEGVVIKRRGGGISETFTVRKVSYGVGVERTFPIHTPRIAKIEVLRRGKVRRAKLYYLRN 102          
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RL19_ANASP (50S ribosomal protein L19 OS=Anabaena sp. (strain PCC 7120) GN=rplS PE=3 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 7.369e-16
Identity = 47/98 (47.96%), Postives = 67/98 (68.37%), Query Frame = 1
Query:  406 AVENVKSQREIPDIKPGYIVQLKVVIPENKR-RVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRDKL 696
            ++E  + +  +P+I  G  V++ V I E ++ RV   +G+VIARRN GI+ T  +RR+  GVGVE +F L+SP I  IKVL + KVRRAKLYYLR ++
Sbjct:    9 SIEAEQLKSNLPEIYIGDTVRVGVKIKEGEKYRVQPYEGVVIARRNGGINETITVRRVFQGVGVERVFLLHSPRIDNIKVLRRGKVRRAKLYYLRGRV 106          
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RK19_CHLVU (50S ribosomal protein L19, chloroplastic OS=Chlorella vulgaris GN=rpl19 PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 7.369e-16
Identity = 44/112 (39.29%), Postives = 74/112 (66.07%), Query Frame = 1
Query:  403 EAVENVKSQREIPDIKPGYIVQLKVVIPE-NKRRVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRD---KLNPLRNK*EAL 726
            +A+++   + E+PD++ G +V++ V I E NK+R+   +G VI++  AG ++T  +R+ + G+GVE +FPLY+P +  ++VL + +V RAKLYYLR    K   L+ K E L
Sbjct:    9 QAIQSGTIKTELPDVRVGDLVRIGVSIQEGNKQRIQPFEGTVISKHQAGANSTVTVRKSLQGIGVERVFPLYAPCVANLQVLRRAQVSRAKLYYLRSRTGKATRLKEKFETL 120          
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RL19_PETMO (50S ribosomal protein L19 OS=Petrotoga mobilis (strain DSM 10674 / SJ95) GN=rplS PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 9.625e-16
Identity = 48/109 (44.04%), Postives = 68/109 (62.39%), Query Frame = 1
Query:  406 AVENVKSQREIPDIKPGYIVQLKVVIPEN-----KRRVSTLKGIVIARRNAGISTTFRLRRLVAG-VGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRDKLNPLRNK 714
            AVE    + +IP+I+PG  V++ V + E      + R+   +GIVI  R AG+  +F +R++ A  VGVE +FP +SP+I  I+VL K K RRAKLYYLRD    +R K
Sbjct:    7 AVETNYKKEDIPEIRPGDTVRVNVKVVEGEGEKKRERIQPFEGIVIKIRGAGLGRSFTVRKMGADRVGVERIFPFHSPSISSIEVLKKGKTRRAKLYYLRDVKGKIRIK 115          
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RL19_GEOSM (50S ribosomal protein L19 OS=Geobacter sp. (strain M21) GN=rplS PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 9.625e-16
Identity = 41/96 (42.71%), Postives = 67/96 (69.79%), Query Frame = 1
Query:  403 EAVENVKSQREIPDIKPGYIVQLKVVIPE-NKRRVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLR 687
            +A+E  + ++ IP   PG  ++++V I E +K R+   +G+ + R+N GI  +F +R++  GVGVE +FPL+SP+I  I+V+ + +VRRAKLYYLR
Sbjct:    5 DAIEMAQMKKNIPKFIPGDTIKVQVKIVEGDKSRIQAFQGVCLGRQNGGIRESFTVRKISNGVGVERVFPLHSPSIEAIEVVTRGQVRRAKLYYLR 100          
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RL19_GEOBB (50S ribosomal protein L19 OS=Geobacter bemidjiensis (strain Bem / ATCC BAA-1014 / DSM 16622) GN=rplS PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 9.625e-16
Identity = 41/96 (42.71%), Postives = 67/96 (69.79%), Query Frame = 1
Query:  403 EAVENVKSQREIPDIKPGYIVQLKVVIPE-NKRRVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLR 687
            +A+E  + ++ IP   PG  ++++V I E +K R+   +G+ + R+N GI  +F +R++  GVGVE +FPL+SP+I  I+V+ + +VRRAKLYYLR
Sbjct:    5 DAIEMAQMKKNIPKFIPGDTIKVQVKIVEGDKSRIQAFQGVCLGRQNGGIRESFTVRKISNGVGVERVFPLHSPSIEAIEVVTRGQVRRAKLYYLR 100          
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RL19_EXIS2 (50S ribosomal protein L19 OS=Exiguobacterium sibiricum (strain DSM 17290 / JCM 13490 / 255-15) GN=rplS PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 9.625e-16
Identity = 45/102 (44.12%), Postives = 66/102 (64.71%), Query Frame = 1
Query:  388 QILDKEAVENVKSQREIPDIKPGYIVQLKVVIPENKR-RVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRD 690
            Q+  +   E +KS  ++P  +PG  V++ V + E  R R+   +G+VI R   GIS TF +R++  GVGVE  FPL+SP + +I+V+   KVRRAKLYYLR+
Sbjct:    5 QLFREITQEQIKS--DVPAFRPGDTVRVHVKVVEGTRERIQLFEGVVIKRHGGGISETFTVRKISYGVGVERAFPLHSPRVAQIEVVRYGKVRRAKLYYLRN 104          
The following BLAST results are available for this feature:
BLAST of CF831998 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL19_LISIN7.369e-1644.1250S ribosomal protein L19 OS=Listeria innocua GN=r... [more]
RL19_BREBN7.369e-1643.3050S ribosomal protein L19 OS=Brevibacillus brevis ... [more]
RL19_BACHD7.369e-1644.2150S ribosomal protein L19 OS=Bacillus halodurans G... [more]
RL19_BACCN7.369e-1646.8850S ribosomal protein L19 OS=Bacillus cereus subsp... [more]
RL19_ANASP7.369e-1647.9650S ribosomal protein L19 OS=Anabaena sp. (strain ... [more]
RK19_CHLVU7.369e-1639.2950S ribosomal protein L19, chloroplastic OS=Chlore... [more]
RL19_PETMO9.625e-1644.0450S ribosomal protein L19 OS=Petrotoga mobilis (st... [more]
RL19_GEOSM9.625e-1642.7150S ribosomal protein L19 OS=Geobacter sp. (strain... [more]
RL19_GEOBB9.625e-1642.7150S ribosomal protein L19 OS=Geobacter bemidjiensi... [more]
RL19_EXIS29.625e-1644.1250S ribosomal protein L19 OS=Exiguobacterium sibir... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01C09_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01C09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF831998 ID=CF831998; Name=CF831998; organism=Citrus sinensis; type=EST; length=741bp
GGGAGCATCCGATTAATTCAAAGGCATGCCCTTACCAGCTCAAACACTTG
TTCAATCCCAAACGGAGTCGTTTCAACCAAATCTGTCGGTCATTCGTTCC
ATTCTTTCAACAATTTTCTATCCCGCTCGCTCCACTTGTTAGCTACTCGC
TCGCAGGTAAAATATGGCTATCAAACCGAGTCTTGGGGTTCTTCGAACTA
TTACATTAGAACTAGTGGGCCTGGTTTGTTTCCACCAGCAATGATGGAGC
CACATTTTGCCAACAGGTGTATTTCAACATCGGAAAGTTCAGTTGAATCA
GCTTCATATCCTCCTGCTGCTGCTTCCTCTGATTTGGCTCCCCGCATCAA
ATTTAAGAGGCTTGATAAAACTGCCAGGCATATAATGCAGATTCTAGATA
AGGAAGCAGTGGAGAATGTGAAGTCACAGAGGGAGATCCCCGATATAAAG
CCTGGTTATATCGTGCAACTAAAAGTGGTAATTCCAGAGAACAAGAGACG
TGTTTCAACTTTAAAGGGTATTGTTATAGCAAGGCGTAATGCTGGTATAA
GTACTACATTTAGATTGAGGAGGCTGGTAGCAGGGGTTGGAGTCGAATCT
CTTTTCCCTTTGTACTCACCTAATATACTAGAAATAAAGGTGCTGGACAA
GAAGAAAGTGAGGAGGGCCAAGCTTTACTATCTGAGGGATAAGCTGAATC
CACTTAGAAATAAATAAGAAGCTTTATTGGTGGGAGGATTC
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