CF831998

Overview
NameCF831998
Unique NameCF831998
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length741
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11031 contig Csv1_Contig11031:39..779. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RL19_LACLA (50S ribosomal protein L19 OS=Lactococcus lactis subsp. lactis GN=rplS PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 6.665e-17
Identity = 41/96 (42.71%), Postives = 68/96 (70.83%), Query Frame = 1
Query:  403 EAVENVKSQREIPDIKPGYIVQLKVVIPENKR-RVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLR 687
            E++   + + +IPD +PG  V++   + E  R R+   +G+VIAR+N+GI+ T+ +R++  GVGVE +FP+++P + +I+V+   KVRRAKLYYLR
Sbjct:    5 ESINAAQLRTDIPDFRPGDTVRVHAKVVEGTRERIQMFEGVVIARKNSGINETYTVRKISNGVGVERIFPVHTPRVEQIEVIRHGKVRRAKLYYLR 100          
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RL19_LACLS (50S ribosomal protein L19 OS=Lactococcus lactis subsp. cremoris (strain SK11) GN=rplS PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 8.705e-17
Identity = 41/96 (42.71%), Postives = 68/96 (70.83%), Query Frame = 1
Query:  403 EAVENVKSQREIPDIKPGYIVQLKVVIPENKR-RVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLR 687
            E++   + + +IPD +PG  V++   + E  R R+   +G+VIAR+N+GI+ T+ +R++  GVGVE +FP+++P + +I+V+   KVRRAKLYYLR
Sbjct:    5 ESINAAQLRTDIPDFRPGDTVRVHAKVVEGTRERIQIFEGVVIARKNSGINETYTVRKISNGVGVERIFPVHTPRVEKIEVIRHGKVRRAKLYYLR 100          
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RL19_LACLM (50S ribosomal protein L19 OS=Lactococcus lactis subsp. cremoris (strain MG1363) GN=rplS PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 8.705e-17
Identity = 41/96 (42.71%), Postives = 68/96 (70.83%), Query Frame = 1
Query:  403 EAVENVKSQREIPDIKPGYIVQLKVVIPENKR-RVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLR 687
            E++   + + +IPD +PG  V++   + E  R R+   +G+VIAR+N+GI+ T+ +R++  GVGVE +FP+++P + +I+V+   KVRRAKLYYLR
Sbjct:    5 ESINAAQLRTDIPDFRPGDTVRVHAKVVEGTRERIQIFEGVVIARKNSGINETYTVRKISNGVGVERIFPVHTPRVEKIEVIRHGKVRRAKLYYLR 100          
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RL19_CORU7 (50S ribosomal protein L19 OS=Corynebacterium urealyticum (strain ATCC 43042 / DSM 7109) GN=rplS PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 8.705e-17
Identity = 47/104 (45.19%), Postives = 71/104 (68.27%), Query Frame = 1
Query:  385 MQILDKEAVENVKSQREIPDIKPGYIVQLKV-VIPENKRRVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRDK 693
            M ILDK  V+  + + +IP+ + G  V + + VI  +K RV   +G+VI R+ +GI  TF +R++  G+GVE   P++SPNI +++VL + KVRRAKLYYLRD+
Sbjct:    1 MHILDK--VDAAQLRDDIPEFRAGDTVDVHLKVIEGSKSRVQVFRGVVIKRQGSGIRETFTVRKVSFGIGVERTIPVHSPNIDKLEVLSRGKVRRAKLYYLRDR 102          
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RL19_AZOC5 (50S ribosomal protein L19 OS=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) GN=rplS PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 8.705e-17
Identity = 46/106 (43.40%), Postives = 68/106 (64.15%), Query Frame = 1
Query:  379 HIMQILDKEAVENVKSQREIPDIKPGYIVQLKVVIPENKR-RVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRDK 693
            +I+Q L+ E    +   + IP+ +PG  V + V + E +R RV   +G+ IAR   G++  F +R++  G GVE +FP+YSP I  IKV+ + KVRRAKLYYLRD+
Sbjct:    2 NIIQQLEAEQAARLSETKTIPEFQPGDTVIVNVKVVEGERTRVQAYEGVCIARNGGGLNENFVVRKISYGEGVERVFPIYSPLIDSIKVVRRGKVRRAKLYYLRDR 107          
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RL19_AGRVS (50S ribosomal protein L19 OS=Agrobacterium vitis (strain S4 / ATCC BAA-846) GN=rplS PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 8.705e-17
Identity = 42/106 (39.62%), Postives = 71/106 (66.98%), Query Frame = 1
Query:  379 HIMQILDKEAVENVKSQREIPDIKPGYIVQLKVVIPE-NKRRVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRDK 693
            +I+Q L+ E    ++++R +P+  PG  +++ V + E N+ RV   +G+ IAR    I+ +F +R++  G GVE +FP+YSP +  ++V+ + KVRRAKLYYLRD+
Sbjct:    2 NIIQQLEAEQAATIEAKRTLPEFSPGDTLRVNVRVTEGNRTRVQAYEGVCIARSGGSINESFTVRKISYGEGVERVFPVYSPLVESVEVVRRGKVRRAKLYYLRDR 107          
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RL19_ZYMMO (50S ribosomal protein L19 OS=Zymomonas mobilis GN=rplS PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.137e-16
Identity = 43/106 (40.57%), Postives = 71/106 (66.98%), Query Frame = 1
Query:  379 HIMQILDKEAVENVKSQREIPDIKPGYIVQLKVVIPENKR-RVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRDK 693
            +++Q L+ E +  ++ Q+ IPD + G  +++ V + E +R R+   +G+ IAR N  I ++F +R++  G GVE +FPLYSPN+  I+V+ +  VRRAKLYYLR +
Sbjct:    2 NLIQTLEAEQIAKLQEQKSIPDFRAGDTLKVGVRVVEGERIRIQFYEGVCIARSNKAIGSSFTVRKISFGEGVERVFPLYSPNVDSIEVVRRGVVRRAKLYYLRGR 107          
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RL19_THISH (50S ribosomal protein L19 OS=Thioalkalivibrio sp. (strain HL-EbGR7) GN=rplS PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.137e-16
Identity = 43/97 (44.33%), Postives = 65/97 (67.01%), Query Frame = 1
Query:  403 EAVENVKSQREIPDIKPGYIVQLKVVIPE-NKRRVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRD 690
            + +E  +  RE+PD  PG  V ++V + E N+ R+   +G+VIA+RN G+++ F +R++  G GVE +F  YSP + EI+V  +  VRRAKLYYLRD
Sbjct:    6 QQLEAEQMNREVPDFTPGDTVVVQVKVKEGNRERLQAFEGVVIAKRNRGLNSAFTVRKISHGEGVERVFQTYSPAVAEIQVKRRGSVRRAKLYYLRD 102          
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RL19_THEM4 (50S ribosomal protein L19 OS=Thermosipho melanesiensis (strain BI429 / DSM 12029) GN=rplS PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.137e-16
Identity = 47/106 (44.34%), Postives = 74/106 (69.81%), Query Frame = 1
Query:  379 HIMQILDKEAVENVKSQREIPDIKPGYIVQLKVVIPE-NKRRVSTLKGIVIARRNAGISTTFRLRRLVA-GVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRD 690
            ++++I++K+ V      +E+P+ +PG  V++ V   E NK R    +GIVI+ R +G+  TF +RR+ A G+GVE +FPLY+P I +I+V+ + KVRRAKLYYLR+
Sbjct:    5 NLIRIIEKDQV------KEVPEFRPGDTVRVYVKFKEGNKERTQAFEGIVISLRGSGVGKTFTVRRIGANGIGVERIFPLYAPIIEKIEVVRRGKVRRAKLYYLRN 104          
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RL19_SPHAL (50S ribosomal protein L19 OS=Sphingopyxis alaskensis GN=rplS PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.137e-16
Identity = 46/98 (46.94%), Postives = 65/98 (66.33%), Query Frame = 1
Query:  403 EAVENVKSQREIPDIKPGYIVQLKVVIPENKR-RVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRDK 693
            EA E  K+ ++IP  +PG  +++ V + E +R RV   +G+ IAR N G+ + F +R++  G GVE +FPLYSPNI  I V+ K  VRRAKLYYLR +
Sbjct:    8 EAEEIAKAGKDIPTFRPGDTLKVGVKVVEGERTRVQNFEGVCIARSNKGMGSNFTVRKMSFGEGVERVFPLYSPNIDSITVVRKGAVRRAKLYYLRGR 105          
The following BLAST results are available for this feature:
BLAST of CF831998 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL19_LACLA6.665e-1742.7150S ribosomal protein L19 OS=Lactococcus lactis su... [more]
RL19_LACLS8.705e-1742.7150S ribosomal protein L19 OS=Lactococcus lactis su... [more]
RL19_LACLM8.705e-1742.7150S ribosomal protein L19 OS=Lactococcus lactis su... [more]
RL19_CORU78.705e-1745.1950S ribosomal protein L19 OS=Corynebacterium ureal... [more]
RL19_AZOC58.705e-1743.4050S ribosomal protein L19 OS=Azorhizobium caulinod... [more]
RL19_AGRVS8.705e-1739.6250S ribosomal protein L19 OS=Agrobacterium vitis (... [more]
RL19_ZYMMO1.137e-1640.5750S ribosomal protein L19 OS=Zymomonas mobilis GN=... [more]
RL19_THISH1.137e-1644.3350S ribosomal protein L19 OS=Thioalkalivibrio sp. ... [more]
RL19_THEM41.137e-1644.3450S ribosomal protein L19 OS=Thermosipho melanesie... [more]
RL19_SPHAL1.137e-1646.9450S ribosomal protein L19 OS=Sphingopyxis alaskens... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01C09_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01C09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF831998 ID=CF831998; Name=CF831998; organism=Citrus sinensis; type=EST; length=741bp
GGGAGCATCCGATTAATTCAAAGGCATGCCCTTACCAGCTCAAACACTTG
TTCAATCCCAAACGGAGTCGTTTCAACCAAATCTGTCGGTCATTCGTTCC
ATTCTTTCAACAATTTTCTATCCCGCTCGCTCCACTTGTTAGCTACTCGC
TCGCAGGTAAAATATGGCTATCAAACCGAGTCTTGGGGTTCTTCGAACTA
TTACATTAGAACTAGTGGGCCTGGTTTGTTTCCACCAGCAATGATGGAGC
CACATTTTGCCAACAGGTGTATTTCAACATCGGAAAGTTCAGTTGAATCA
GCTTCATATCCTCCTGCTGCTGCTTCCTCTGATTTGGCTCCCCGCATCAA
ATTTAAGAGGCTTGATAAAACTGCCAGGCATATAATGCAGATTCTAGATA
AGGAAGCAGTGGAGAATGTGAAGTCACAGAGGGAGATCCCCGATATAAAG
CCTGGTTATATCGTGCAACTAAAAGTGGTAATTCCAGAGAACAAGAGACG
TGTTTCAACTTTAAAGGGTATTGTTATAGCAAGGCGTAATGCTGGTATAA
GTACTACATTTAGATTGAGGAGGCTGGTAGCAGGGGTTGGAGTCGAATCT
CTTTTCCCTTTGTACTCACCTAATATACTAGAAATAAAGGTGCTGGACAA
GAAGAAAGTGAGGAGGGCCAAGCTTTACTATCTGAGGGATAAGCTGAATC
CACTTAGAAATAAATAAGAAGCTTTATTGGTGGGAGGATTC
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