CF831998

Overview
NameCF831998
Unique NameCF831998
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length741
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RL19_LEIXX (50S ribosomal protein L19 OS=Leifsonia xyli subsp. xyli GN=rplS PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.897e-14
Identity = 45/103 (43.69%), Postives = 67/103 (65.05%), Query Frame = 1
Query:  385 MQILDKEAVENVKSQREIPDIKPGYIVQLKVVIPENKR-RVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRD 690
            M ILD+  V+    +++IP  + G  V++ V I E  R RV   +G+VIAR   G+  TF +R++   VGVE +FP++SP I +I+V+ +  VRRAKLYYLR+
Sbjct:    1 MHILDQ--VDAASLKQDIPAFRAGDTVKVHVNIIEGSRSRVQVFQGVVIARSGEGVRETFTVRKISFQVGVERMFPVHSPVIDKIEVVTRGDVRRAKLYYLRE 101          
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RL19_DECAR (50S ribosomal protein L19 OS=Dechloromonas aromatica (strain RCB) GN=rplS PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.897e-14
Identity = 40/98 (40.82%), Postives = 63/98 (64.29%), Query Frame = 1
Query:  403 EAVENVKSQREIPDIKPGYIVQLKVVIPE-NKRRVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRDK 693
            E  E  +  + IP+  PG  V ++V + E N+ R+   +G+VIA+RN G+++ F +R++ +G GVE  F  YSP +  I+V  +  VRRAKLYYLR++
Sbjct:    8 EQEEIARLGKTIPEFAPGDTVVVQVKVKEGNRERLQAYEGVVIAKRNRGLNSGFTVRKISSGEGVERTFQTYSPLVASIEVKRRGDVRRAKLYYLRER 105          
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RL19_CORGB (50S ribosomal protein L19 OS=Corynebacterium glutamicum (strain R) GN=rplS PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.897e-14
Identity = 43/103 (41.75%), Postives = 64/103 (62.14%), Query Frame = 1
Query:  385 MQILDKEAVENVKSQREIPDIKPGYIVQLKV-VIPENKRRVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRD 690
            M ILDK  ++    + ++P  + G  + + V VI     R    KG+VI R+  GI  TF +R++  G+GVE  FP++SPNI +I+V+ +  VRRAKLYYLR+
Sbjct:    1 MNILDK--IDAASLRDDVPAFRAGDTLDVHVKVIEGTTTRTQLFKGVVIRRQGGGIRETFTVRKVSFGIGVERTFPVHSPNIEKIEVVRRGDVRRAKLYYLRE 101          
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RL19_CLAMS (50S ribosomal protein L19 OS=Clavibacter michiganensis subsp. sepedonicus (strain ATCC 33113 / JCM 9667) GN=rplS PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.897e-14
Identity = 45/103 (43.69%), Postives = 65/103 (63.11%), Query Frame = 1
Query:  385 MQILDKEAVENVKSQREIPDIKPGYIVQLKVVIPENKR-RVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRD 690
            M ILD  +V+    + +IPD + G  V++ V I E  R R+   +GIVI R+  G+  TF +R++   VGVE  FP++SP I  I+V+ +  VRRAKLY+LRD
Sbjct:    1 MHILD--SVDKASLRSDIPDFRAGDTVKVHVNIVEGSRSRIQVFQGIVIGRQGEGVRETFCVRKVSFQVGVERTFPVHSPVIDHIEVVTRGDVRRAKLYFLRD 101          
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RK19_NEPOL (50S ribosomal protein L19, chloroplastic OS=Nephroselmis olivacea GN=rpl19 PE=3 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 6.897e-14
Identity = 41/101 (40.59%), Postives = 68/101 (67.33%), Query Frame = 1
Query:  397 DKEAVENVKSQREIPDIKPGYIVQLKVVIPE-NKRRVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRDKL 696
            DKE  E ++  R +P I  G +V++ ++I E +K RV T +G VI++  AG+++T  +R+   GVG+E +F LYSP ++ ++ +   K RRAKLYYLR+++
Sbjct:    5 DKEKKEKIE-YRPLPAIAVGDLVKVGLLILEGDKERVQTYEGTVISKHRAGLNSTITVRKTFQGVGIERVFCLYSPRMVFVEFIRHSKARRAKLYYLRNRV 104          
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RL19_TREDE (50S ribosomal protein L19 OS=Treponema denticola GN=rplS PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 9.008e-14
Identity = 45/106 (42.45%), Postives = 66/106 (62.26%), Query Frame = 1
Query:  382 IMQILDKEAVENVKSQREIPDIKPGYIVQLKVVIPENK-RRVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRDKL 696
            IM+I  ++  EN       P  + G  V++   I E K  R+   +G+VI  +N+GI  TF +R+   GVGVE +FPL+SP I +++V+   KVRRAKLYY+RDK+
Sbjct:    5 IMKIEAQQKAENP------PVFRVGDTVKVHFKIVEGKTERIQVYEGLVICFKNSGIGRTFTVRKNSYGVGVERVFPLHSPRIAKVEVVRPGKVRRAKLYYIRDKV 104          
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RL19_STRS7 (50S ribosomal protein L19 OS=Streptococcus equi subsp. zooepidemicus (strain H70) GN=rplS PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 9.008e-14
Identity = 36/86 (41.86%), Postives = 59/86 (68.60%), Query Frame = 1
Query:  433 EIPDIKPGYIVQLKVVIPENKR-RVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLR 687
            +IP  +PG  V++   + E  R R+   +G+VI+R+  GIS  + +R++ +G+GVE  FP+++P + +I+V+   KVRRAKLYYLR
Sbjct:   16 DIPSFRPGDTVRVHAKVVEGSRERIQIFEGVVISRKGQGISEMYTVRKISSGIGVERTFPIHTPRVEKIEVVRHGKVRRAKLYYLR 101          
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RL19_STREM (50S ribosomal protein L19 OS=Streptococcus equi subsp. zooepidemicus (strain MGCS10565) GN=rplS PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 9.008e-14
Identity = 36/86 (41.86%), Postives = 59/86 (68.60%), Query Frame = 1
Query:  433 EIPDIKPGYIVQLKVVIPENKR-RVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLR 687
            +IP  +PG  V++   + E  R R+   +G+VI+R+  GIS  + +R++ +G+GVE  FP+++P + +I+V+   KVRRAKLYYLR
Sbjct:   16 DIPSFRPGDTVRVHAKVVEGSRERIQIFEGVVISRKGQGISEMYTVRKISSGIGVERTFPIHTPRVEKIEVVRHGKVRRAKLYYLR 101          
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RL19_POLSJ (50S ribosomal protein L19 OS=Polaromonas sp. (strain JS666 / ATCC BAA-500) GN=rplS PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 9.008e-14
Identity = 42/106 (39.62%), Postives = 69/106 (65.09%), Query Frame = 1
Query:  379 HIMQILDKEAVENVKSQREIPDIKPGYIVQLKV-VIPENKRRVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRDK 693
            +++Q L++E +  +   + IP   PG  V + V V+   ++RV   +G+VIA+RN G++++F +R++  G GVE  F +YSP I +I+V  +  VRRAKLYYLR +
Sbjct:    2 NLIQTLEQEEISRLN--KTIPAYAPGDTVIVSVNVVEGTRKRVQAFEGVVIAKRNRGLNSSFIVRKVSNGEGVERTFQVYSPLIAKIEVKRRGDVRRAKLYYLRSR 105          
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RL19_NITEC (50S ribosomal protein L19 OS=Nitrosomonas eutropha (strain C91) GN=rplS PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 9.008e-14
Identity = 40/106 (37.74%), Postives = 70/106 (66.04%), Query Frame = 1
Query:  379 HIMQILDKEAVENVKSQREIPDIKPGYIVQLKV-VIPENKRRVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRDK 693
            ++++ L++E +E +   + IPD  PG  + + V V+  +++R    +G+VIA+RN G++++F +R++ +G  VE  F  YSP I  ++V  +  VRRAKLYYLRD+
Sbjct:    2 NLIEQLEREEIERLG--KIIPDFSPGDTLVVNVNVVEGDRKRTQAFEGVVIAKRNRGLNSSFIVRKISSGEAVERTFQTYSPLIASMEVKRRGAVRRAKLYYLRDR 105          
The following BLAST results are available for this feature:
BLAST of CF831998 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL19_LEIXX6.897e-1443.6950S ribosomal protein L19 OS=Leifsonia xyli subsp.... [more]
RL19_DECAR6.897e-1440.8250S ribosomal protein L19 OS=Dechloromonas aromati... [more]
RL19_CORGB6.897e-1441.7550S ribosomal protein L19 OS=Corynebacterium gluta... [more]
RL19_CLAMS6.897e-1443.6950S ribosomal protein L19 OS=Clavibacter michigane... [more]
RK19_NEPOL6.897e-1440.5950S ribosomal protein L19, chloroplastic OS=Nephro... [more]
RL19_TREDE9.008e-1442.4550S ribosomal protein L19 OS=Treponema denticola G... [more]
RL19_STRS79.008e-1441.8650S ribosomal protein L19 OS=Streptococcus equi su... [more]
RL19_STREM9.008e-1441.8650S ribosomal protein L19 OS=Streptococcus equi su... [more]
RL19_POLSJ9.008e-1439.6250S ribosomal protein L19 OS=Polaromonas sp. (stra... [more]
RL19_NITEC9.008e-1437.7450S ribosomal protein L19 OS=Nitrosomonas eutropha... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS02_01C09_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01C09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF831998 ID=CF831998; Name=CF831998; organism=Citrus sinensis; type=EST; length=741bp
GGGAGCATCCGATTAATTCAAAGGCATGCCCTTACCAGCTCAAACACTTG
TTCAATCCCAAACGGAGTCGTTTCAACCAAATCTGTCGGTCATTCGTTCC
ATTCTTTCAACAATTTTCTATCCCGCTCGCTCCACTTGTTAGCTACTCGC
TCGCAGGTAAAATATGGCTATCAAACCGAGTCTTGGGGTTCTTCGAACTA
TTACATTAGAACTAGTGGGCCTGGTTTGTTTCCACCAGCAATGATGGAGC
CACATTTTGCCAACAGGTGTATTTCAACATCGGAAAGTTCAGTTGAATCA
GCTTCATATCCTCCTGCTGCTGCTTCCTCTGATTTGGCTCCCCGCATCAA
ATTTAAGAGGCTTGATAAAACTGCCAGGCATATAATGCAGATTCTAGATA
AGGAAGCAGTGGAGAATGTGAAGTCACAGAGGGAGATCCCCGATATAAAG
CCTGGTTATATCGTGCAACTAAAAGTGGTAATTCCAGAGAACAAGAGACG
TGTTTCAACTTTAAAGGGTATTGTTATAGCAAGGCGTAATGCTGGTATAA
GTACTACATTTAGATTGAGGAGGCTGGTAGCAGGGGTTGGAGTCGAATCT
CTTTTCCCTTTGTACTCACCTAATATACTAGAAATAAAGGTGCTGGACAA
GAAGAAAGTGAGGAGGGCCAAGCTTTACTATCTGAGGGATAAGCTGAATC
CACTTAGAAATAAATAAGAAGCTTTATTGGTGGGAGGATTC
back to top