CF831998

Overview
NameCF831998
Unique NameCF831998
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length741
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11031 contig Csv1_Contig11031:39..779. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RL19_RHILO (50S ribosomal protein L19 OS=Rhizobium loti GN=rplS PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.137e-16
Identity = 41/105 (39.05%), Postives = 72/105 (68.57%), Query Frame = 1
Query:  382 IMQILDKEAVENVKSQREIPDIKPGYIVQLKVVIPENKR-RVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRDK 693
            I++ L+ E    ++++R++P+ +PG  V+++V + E  R RV   +G+VIAR  +G    F +R++  G GVE +FP++SP +  ++++ + KVRRAKLYYLRD+
Sbjct:    3 IIRQLEAEQAAKIEAKRKLPEFQPGDTVRVQVRVTEGTRTRVQAYEGVVIARAGSGFQENFTVRKISYGEGVERVFPVFSPMVEGVEIVRRGKVRRAKLYYLRDR 107          
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RL19_GEOSF (50S ribosomal protein L19 OS=Geobacter sp. (strain FRC-32) GN=rplS PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.137e-16
Identity = 44/96 (45.83%), Postives = 68/96 (70.83%), Query Frame = 1
Query:  403 EAVENVKSQREIPDIKPGYIVQLKVVIPE-NKRRVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLR 687
            +A+E  + ++ IP  +PG  V+++V I E +K R+   +G+VI R+N GI  +F +R++  GVGVE  FPL+SP+I  I+V+ + +VRRAKLYYLR
Sbjct:    5 DAIEMEQMKKNIPGFRPGDTVKVQVKIVEGDKSRIQAFQGVVIGRQNGGIRESFTVRKISNGVGVERSFPLHSPSIDAIEVITRGQVRRAKLYYLR 100          
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RL19_DESRM (50S ribosomal protein L19 OS=Desulfotomaculum reducens (strain MI-1) GN=rplS PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.137e-16
Identity = 42/96 (43.75%), Postives = 66/96 (68.75%), Query Frame = 1
Query:  403 EAVENVKSQREIPDIKPGYIVQLKV-VIPENKRRVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLR 687
            +++E  + ++E+P  +PG  +++   VI  N+ R+   +G+VI RR  G+S TF +RR+  GVGVE  FPL++P I  I+V+ + KVRRA+LYYLR
Sbjct:    5 QSLEQEQIKKELPSFRPGDTIKVNYKVIEGNRERIQAFEGVVIRRRGGGLSETFTVRRISYGVGVERTFPLHAPKIDSIEVVRRGKVRRARLYYLR 100          
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RL19_CORDI (50S ribosomal protein L19 OS=Corynebacterium diphtheriae GN=rplS PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.137e-16
Identity = 46/103 (44.66%), Postives = 69/103 (66.99%), Query Frame = 1
Query:  385 MQILDKEAVENVKSQREIPDIKPGYIVQLKV-VIPENKRRVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRD 690
            M +LDK  V+    + +IP  +PG  + + V VI  +K R+   KG+VI R+ AG+  TF +R++  G+GVE  FP+++PNI +I+V+ +  VRRAKLYYLRD
Sbjct:    1 MNLLDK--VDAASLRDDIPAFRPGDTLNVHVKVIEGSKSRIQVFKGVVIRRQGAGVRETFTIRKVSFGIGVERTFPVHTPNIDKIEVVTRGDVRRAKLYYLRD 101          
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RL19_BRUSU (50S ribosomal protein L19 OS=Brucella suis GN=rplS PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.137e-16
Identity = 43/103 (41.75%), Postives = 70/103 (67.96%), Query Frame = 1
Query:  382 IMQILDKEAVENVKSQREIPDIKPGYIVQLKVVIPENKR-RVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLR 687
            I++ L+ E    ++ +R++PD +PG  V+++V + E  R RV   +G+ IAR  AG++  F +R++  G GVE +FP+YSP +  ++V+ + KVRRAKLYYLR
Sbjct:    4 IIRQLEAEQAAKIEEKRKLPDFQPGDTVRVQVRVTEGTRTRVQAYEGVCIARSGAGLNENFTVRKISYGEGVERVFPVYSPIVEGVEVVRRGKVRRAKLYYLR 106          
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RL19_BRUSI (50S ribosomal protein L19 OS=Brucella suis (strain ATCC 23445 / NCTC 10510) GN=rplS PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.137e-16
Identity = 43/103 (41.75%), Postives = 70/103 (67.96%), Query Frame = 1
Query:  382 IMQILDKEAVENVKSQREIPDIKPGYIVQLKVVIPENKR-RVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLR 687
            I++ L+ E    ++ +R++PD +PG  V+++V + E  R RV   +G+ IAR  AG++  F +R++  G GVE +FP+YSP +  ++V+ + KVRRAKLYYLR
Sbjct:    4 IIRQLEAEQAAKIEEKRKLPDFQPGDTVRVQVRVTEGTRTRVQAYEGVCIARSGAGLNENFTVRKISYGEGVERVFPVYSPIVEGVEVVRRGKVRRAKLYYLR 106          
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RL19_BRUO2 (50S ribosomal protein L19 OS=Brucella ovis (strain ATCC 25840 / 63/290 / NCTC 10512) GN=rplS PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.137e-16
Identity = 43/103 (41.75%), Postives = 70/103 (67.96%), Query Frame = 1
Query:  382 IMQILDKEAVENVKSQREIPDIKPGYIVQLKVVIPENKR-RVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLR 687
            I++ L+ E    ++ +R++PD +PG  V+++V + E  R RV   +G+ IAR  AG++  F +R++  G GVE +FP+YSP +  ++V+ + KVRRAKLYYLR
Sbjct:    4 IIRQLEAEQAAKIEEKRKLPDFQPGDTVRVQVRVTEGTRTRVQAYEGVCIARSGAGLNENFTVRKISYGEGVERVFPVYSPIVEGVEVVRRGKVRRAKLYYLR 106          
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RL19_BRUME (50S ribosomal protein L19 OS=Brucella melitensis GN=rplS PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.137e-16
Identity = 43/103 (41.75%), Postives = 70/103 (67.96%), Query Frame = 1
Query:  382 IMQILDKEAVENVKSQREIPDIKPGYIVQLKVVIPENKR-RVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLR 687
            I++ L+ E    ++ +R++PD +PG  V+++V + E  R RV   +G+ IAR  AG++  F +R++  G GVE +FP+YSP +  ++V+ + KVRRAKLYYLR
Sbjct:    4 IIRQLEAEQAAKIEEKRKLPDFQPGDTVRVQVRVTEGTRTRVQAYEGVCIARSGAGLNENFTVRKISYGEGVERVFPVYSPIVEGVEVVRRGKVRRAKLYYLR 106          
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RL19_BRUMB (50S ribosomal protein L19 OS=Brucella melitensis biotype 2 (strain ATCC 23457) GN=rplS PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.137e-16
Identity = 43/103 (41.75%), Postives = 70/103 (67.96%), Query Frame = 1
Query:  382 IMQILDKEAVENVKSQREIPDIKPGYIVQLKVVIPENKR-RVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLR 687
            I++ L+ E    ++ +R++PD +PG  V+++V + E  R RV   +G+ IAR  AG++  F +R++  G GVE +FP+YSP +  ++V+ + KVRRAKLYYLR
Sbjct:    4 IIRQLEAEQAAKIEEKRKLPDFQPGDTVRVQVRVTEGTRTRVQAYEGVCIARSGAGLNENFTVRKISYGEGVERVFPVYSPIVEGVEVVRRGKVRRAKLYYLR 106          
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RL19_BRUC2 (50S ribosomal protein L19 OS=Brucella canis (strain ATCC 23365 / NCTC 10854) GN=rplS PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.137e-16
Identity = 43/103 (41.75%), Postives = 70/103 (67.96%), Query Frame = 1
Query:  382 IMQILDKEAVENVKSQREIPDIKPGYIVQLKVVIPENKR-RVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLR 687
            I++ L+ E    ++ +R++PD +PG  V+++V + E  R RV   +G+ IAR  AG++  F +R++  G GVE +FP+YSP +  ++V+ + KVRRAKLYYLR
Sbjct:    4 IIRQLEAEQAAKIEEKRKLPDFQPGDTVRVQVRVTEGTRTRVQAYEGVCIARSGAGLNENFTVRKISYGEGVERVFPVYSPIVEGVEVVRRGKVRRAKLYYLR 106          
The following BLAST results are available for this feature:
BLAST of CF831998 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL19_RHILO1.137e-1639.0550S ribosomal protein L19 OS=Rhizobium loti GN=rpl... [more]
RL19_GEOSF1.137e-1645.8350S ribosomal protein L19 OS=Geobacter sp. (strain... [more]
RL19_DESRM1.137e-1643.7550S ribosomal protein L19 OS=Desulfotomaculum redu... [more]
RL19_CORDI1.137e-1644.6650S ribosomal protein L19 OS=Corynebacterium dipht... [more]
RL19_BRUSU1.137e-1641.7550S ribosomal protein L19 OS=Brucella suis GN=rplS... [more]
RL19_BRUSI1.137e-1641.7550S ribosomal protein L19 OS=Brucella suis (strain... [more]
RL19_BRUO21.137e-1641.7550S ribosomal protein L19 OS=Brucella ovis (strain... [more]
RL19_BRUME1.137e-1641.7550S ribosomal protein L19 OS=Brucella melitensis G... [more]
RL19_BRUMB1.137e-1641.7550S ribosomal protein L19 OS=Brucella melitensis b... [more]
RL19_BRUC21.137e-1641.7550S ribosomal protein L19 OS=Brucella canis (strai... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01C09_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01C09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF831998 ID=CF831998; Name=CF831998; organism=Citrus sinensis; type=EST; length=741bp
GGGAGCATCCGATTAATTCAAAGGCATGCCCTTACCAGCTCAAACACTTG
TTCAATCCCAAACGGAGTCGTTTCAACCAAATCTGTCGGTCATTCGTTCC
ATTCTTTCAACAATTTTCTATCCCGCTCGCTCCACTTGTTAGCTACTCGC
TCGCAGGTAAAATATGGCTATCAAACCGAGTCTTGGGGTTCTTCGAACTA
TTACATTAGAACTAGTGGGCCTGGTTTGTTTCCACCAGCAATGATGGAGC
CACATTTTGCCAACAGGTGTATTTCAACATCGGAAAGTTCAGTTGAATCA
GCTTCATATCCTCCTGCTGCTGCTTCCTCTGATTTGGCTCCCCGCATCAA
ATTTAAGAGGCTTGATAAAACTGCCAGGCATATAATGCAGATTCTAGATA
AGGAAGCAGTGGAGAATGTGAAGTCACAGAGGGAGATCCCCGATATAAAG
CCTGGTTATATCGTGCAACTAAAAGTGGTAATTCCAGAGAACAAGAGACG
TGTTTCAACTTTAAAGGGTATTGTTATAGCAAGGCGTAATGCTGGTATAA
GTACTACATTTAGATTGAGGAGGCTGGTAGCAGGGGTTGGAGTCGAATCT
CTTTTCCCTTTGTACTCACCTAATATACTAGAAATAAAGGTGCTGGACAA
GAAGAAAGTGAGGAGGGCCAAGCTTTACTATCTGAGGGATAAGCTGAATC
CACTTAGAAATAAATAAGAAGCTTTATTGGTGGGAGGATTC
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