CF831998

Overview
NameCF831998
Unique NameCF831998
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length741
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11031 contig Csv1_Contig11031:39..779. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RL19_BRUAB (50S ribosomal protein L19 OS=Brucella abortus GN=rplS PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.137e-16
Identity = 43/103 (41.75%), Postives = 70/103 (67.96%), Query Frame = 1
Query:  382 IMQILDKEAVENVKSQREIPDIKPGYIVQLKVVIPENKR-RVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLR 687
            I++ L+ E    ++ +R++PD +PG  V+++V + E  R RV   +G+ IAR  AG++  F +R++  G GVE +FP+YSP +  ++V+ + KVRRAKLYYLR
Sbjct:    4 IIRQLEAEQAAKIEEKRKLPDFQPGDTVRVQVRVTEGTRTRVQAYEGVCIARSGAGLNENFTVRKISYGEGVERVFPVYSPIVEGVEVVRRGKVRRAKLYYLR 106          
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RL19_BRUA2 (50S ribosomal protein L19 OS=Brucella abortus (strain 2308) GN=rplS PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.137e-16
Identity = 43/103 (41.75%), Postives = 70/103 (67.96%), Query Frame = 1
Query:  382 IMQILDKEAVENVKSQREIPDIKPGYIVQLKVVIPENKR-RVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLR 687
            I++ L+ E    ++ +R++PD +PG  V+++V + E  R RV   +G+ IAR  AG++  F +R++  G GVE +FP+YSP +  ++V+ + KVRRAKLYYLR
Sbjct:    4 IIRQLEAEQAAKIEEKRKLPDFQPGDTVRVQVRVTEGTRTRVQAYEGVCIARSGAGLNENFTVRKISYGEGVERVFPVYSPIVEGVEVVRRGKVRRAKLYYLR 106          
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RL19_BRUA1 (50S ribosomal protein L19 OS=Brucella abortus (strain S19) GN=rplS PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.137e-16
Identity = 43/103 (41.75%), Postives = 70/103 (67.96%), Query Frame = 1
Query:  382 IMQILDKEAVENVKSQREIPDIKPGYIVQLKVVIPENKR-RVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLR 687
            I++ L+ E    ++ +R++PD +PG  V+++V + E  R RV   +G+ IAR  AG++  F +R++  G GVE +FP+YSP +  ++V+ + KVRRAKLYYLR
Sbjct:    4 IIRQLEAEQAAKIEEKRKLPDFQPGDTVRVQVRVTEGTRTRVQAYEGVCIARSGAGLNENFTVRKISYGEGVERVFPVYSPIVEGVEVVRRGKVRRAKLYYLR 106          
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RL19_STAS1 (50S ribosomal protein L19 OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=rplS PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.485e-16
Identity = 45/97 (46.39%), Postives = 66/97 (68.04%), Query Frame = 1
Query:  403 EAVENVKSQREIPDIKPGYIVQLKVVIPENKR-RVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRD 690
            EAV   + + ++P  +PG  +++ V I E  R R+   +G+VI RR  GIS TF +R++ +GVGVE  FPL++P I +I+V  + KVRRAKLYYLR+
Sbjct:    8 EAVTQSQLRTDLPSFRPGDTLKVHVRIIEGTRERIQVFEGVVIKRRGGGISETFTVRKISSGVGVERTFPLHTPKIEKIEVSRRGKVRRAKLYYLRE 104          
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RL19_PELCD (50S ribosomal protein L19 OS=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) GN=rplS PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.485e-16
Identity = 46/102 (45.10%), Postives = 71/102 (69.61%), Query Frame = 1
Query:  385 MQILDKEAVENVKSQREIPDIKPGYIVQLKVVIPE-NKRRVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLR 687
            M I+D+  +E +K  ++IP  K G  +++ V I E +KRR+   +G+ I R N G+ +TF +R++  G+GVE +FPL+SPNI +I+V+   +VRRAKLYYLR
Sbjct:    1 MNIIDRLEMEQMK--KDIPAFKAGDTLRVHVKIVEGDKRRIQVFQGVCIKRHNKGLGSTFTVRKISDGMGVERVFPLHSPNIDKIEVMMVGRVRRAKLYYLR 100          
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RL19_PARL1 (50S ribosomal protein L19 OS=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) GN=rplS PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.485e-16
Identity = 45/104 (43.27%), Postives = 67/104 (64.42%), Query Frame = 1
Query:  379 HIMQILDKEAVENVKSQREIPDIKPGYIVQLKVVIPENKR-RVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLR 687
            +I++ +D+E +  +   + IPD  PG  +Q+ V + E  R R+   +G+ IAR   GI+  F +R++  G GVE +FPLYSP +  IKV+ K +VRRAKLYYLR
Sbjct:    2 NIIEQIDQEQMATLTGGKTIPDFAPGDTLQVNVKVVEGTRERLQAYEGVCIARAGGGINENFTVRKISYGEGVERVFPLYSPLVDSIKVVRKGRVRRAKLYYLR 105          
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RL19_NOSP7 (50S ribosomal protein L19 OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=rplS PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.485e-16
Identity = 47/98 (47.96%), Postives = 68/98 (69.39%), Query Frame = 1
Query:  406 AVENVKSQREIPDIKPGYIVQLKVVIPENKR-RVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRDKL 696
            ++E  + +  +PDI  G  V++ V I E ++ RV   +G+VIA+RN GI+ T  +R++  GVGVE +F L+SP I  IKVL + KVRRAKLYYLRD++
Sbjct:    9 SIEAEQLKSNLPDIYVGDTVKVGVKIKEGEKYRVQPYEGVVIAKRNGGINETITVRKVFQGVGVERVFLLHSPRIDSIKVLRRGKVRRAKLYYLRDRV 106          
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RL19_MYCA9 (50S ribosomal protein L19 OS=Mycobacterium abscessus (strain ATCC 19977 / DSM 44196) GN=rplS PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.485e-16
Identity = 42/95 (44.21%), Postives = 62/95 (65.26%), Query Frame = 1
Query:  409 VENVKSQREIPDIKPGYIVQLKV-VIPENKRRVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRD 690
            V+    + ++PD +PG  + + V VI  +K R+   KG+V+ R   G+S TF +R+   GVGVE  FP++SPNI  I++L +  VRRAKLYYLR+
Sbjct:    7 VDQASLREDVPDFRPGDTINVHVKVIEGSKERIQVFKGVVLRRSGGGVSATFTVRKESYGVGVERTFPVHSPNIDHIEILTRGAVRRAKLYYLRE 101          
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RL19_METS4 (50S ribosomal protein L19 OS=Methylobacterium sp. (strain 4-46) GN=rplS PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.485e-16
Identity = 47/106 (44.34%), Postives = 69/106 (65.09%), Query Frame = 1
Query:  379 HIMQILDKEAVENVKSQREIPDIKPGYIVQLKVVIPENKR-RVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRDK 693
            +I+Q L++E +   K  + IPD +PG  V + V + E +R RV   +G+ I R  +G++  F +R++  G GVE +FP+YSP I  IKV  + KVRRAKLYYLRD+
Sbjct:    2 NIIQQLEQEEI--AKLNKTIPDFEPGDTVIVNVKVKEGERTRVQAYEGVCIGRSGSGLNENFTVRKISYGEGVERVFPIYSPMIDSIKVTRRGKVRRAKLYYLRDR 105          
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RL19_METNO (50S ribosomal protein L19 OS=Methylobacterium nodulans (strain ORS2060 / LMG 21967) GN=rplS PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.485e-16
Identity = 47/106 (44.34%), Postives = 69/106 (65.09%), Query Frame = 1
Query:  379 HIMQILDKEAVENVKSQREIPDIKPGYIVQLKVVIPENKR-RVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRDK 693
            +I+Q L++E +  +   + IPD +PG  V + V + E  R RV   +G+ IAR   G++  F +R++  G GVE +FP+YSP I  IKV+ + KVRRAKLYYLRD+
Sbjct:    2 NIIQQLEQEQIAQLN--KTIPDFEPGDTVVVNVKVKEGDRTRVQAYEGVCIARAGGGLNENFTVRKISYGEGVERVFPIYSPLIDSIKVVRRGKVRRAKLYYLRDR 105          
The following BLAST results are available for this feature:
BLAST of CF831998 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL19_BRUAB1.137e-1641.7550S ribosomal protein L19 OS=Brucella abortus GN=r... [more]
RL19_BRUA21.137e-1641.7550S ribosomal protein L19 OS=Brucella abortus (str... [more]
RL19_BRUA11.137e-1641.7550S ribosomal protein L19 OS=Brucella abortus (str... [more]
RL19_STAS11.485e-1646.3950S ribosomal protein L19 OS=Staphylococcus saprop... [more]
RL19_PELCD1.485e-1645.1050S ribosomal protein L19 OS=Pelobacter carbinolic... [more]
RL19_PARL11.485e-1643.2750S ribosomal protein L19 OS=Parvibaculum lavament... [more]
RL19_NOSP71.485e-1647.9650S ribosomal protein L19 OS=Nostoc punctiforme (s... [more]
RL19_MYCA91.485e-1644.2150S ribosomal protein L19 OS=Mycobacterium abscess... [more]
RL19_METS41.485e-1644.3450S ribosomal protein L19 OS=Methylobacterium sp. ... [more]
RL19_METNO1.485e-1644.3450S ribosomal protein L19 OS=Methylobacterium nodu... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01C09_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01C09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF831998 ID=CF831998; Name=CF831998; organism=Citrus sinensis; type=EST; length=741bp
GGGAGCATCCGATTAATTCAAAGGCATGCCCTTACCAGCTCAAACACTTG
TTCAATCCCAAACGGAGTCGTTTCAACCAAATCTGTCGGTCATTCGTTCC
ATTCTTTCAACAATTTTCTATCCCGCTCGCTCCACTTGTTAGCTACTCGC
TCGCAGGTAAAATATGGCTATCAAACCGAGTCTTGGGGTTCTTCGAACTA
TTACATTAGAACTAGTGGGCCTGGTTTGTTTCCACCAGCAATGATGGAGC
CACATTTTGCCAACAGGTGTATTTCAACATCGGAAAGTTCAGTTGAATCA
GCTTCATATCCTCCTGCTGCTGCTTCCTCTGATTTGGCTCCCCGCATCAA
ATTTAAGAGGCTTGATAAAACTGCCAGGCATATAATGCAGATTCTAGATA
AGGAAGCAGTGGAGAATGTGAAGTCACAGAGGGAGATCCCCGATATAAAG
CCTGGTTATATCGTGCAACTAAAAGTGGTAATTCCAGAGAACAAGAGACG
TGTTTCAACTTTAAAGGGTATTGTTATAGCAAGGCGTAATGCTGGTATAA
GTACTACATTTAGATTGAGGAGGCTGGTAGCAGGGGTTGGAGTCGAATCT
CTTTTCCCTTTGTACTCACCTAATATACTAGAAATAAAGGTGCTGGACAA
GAAGAAAGTGAGGAGGGCCAAGCTTTACTATCTGAGGGATAAGCTGAATC
CACTTAGAAATAAATAAGAAGCTTTATTGGTGGGAGGATTC
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