CF831998

Overview
NameCF831998
Unique NameCF831998
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length741
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11031 contig Csv1_Contig11031:39..779. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RL19_CAUSK (50S ribosomal protein L19 OS=Caulobacter sp. (strain K31) GN=rplS PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.485e-16
Identity = 46/108 (42.59%), Postives = 71/108 (65.74%), Query Frame = 1
Query:  373 ARHIMQILDKEAVENVKSQREIPDIKPGYIVQLKVVIPENKR-RVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRDK 693
            A +I++ L++E  + + + R IP+ +PG  +++ V I E +R RV   +G+ IAR   G+  +F +R++  G GVE LFPL SP+I  I+V  +  VRRAKLYYLRD+
Sbjct:    2 AANIIKELEREEAQRLLAARAIPEFEPGDTLRVNVRIKEGERERVQAYEGVCIARSGGGVHESFTVRKISFGEGVERLFPLLSPSIESIEVKRRGVVRRAKLYYLRDR 109          
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RL19_RALME (50S ribosomal protein L19 OS=Ralstonia metallidurans (strain CH34 / ATCC 43123 / DSM 2839) GN=rplS PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.939e-16
Identity = 44/106 (41.51%), Postives = 72/106 (67.92%), Query Frame = 1
Query:  379 HIMQILDKEAVENVKSQREIPDIKPGYIVQLKV-VIPENKRRVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRDK 693
            +I++ ++KE +  + + + IP   PG  V + V V+  N++RV   +G+VIA+RN G++++F +R++ +G GVE  F LYSP I  I+V  +  VRRAKLYYLR++
Sbjct:    2 NIIEQIEKEEIARLTANKTIPAFAPGDTVIVNVNVVEGNRKRVQAYEGVVIAKRNRGLNSSFIVRKISSGEGVERTFQLYSPLIAGIEVKRRGDVRRAKLYYLRER 107          
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RL19_RALEJ (50S ribosomal protein L19 OS=Ralstonia eutropha (strain JMP134) GN=rplS PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.939e-16
Identity = 44/106 (41.51%), Postives = 72/106 (67.92%), Query Frame = 1
Query:  379 HIMQILDKEAVENVKSQREIPDIKPGYIVQLKV-VIPENKRRVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRDK 693
            +I++ ++KE +  + + + IP   PG  V + V V+  N++RV   +G+VIA+RN G++++F +R++ +G GVE  F LYSP I  I+V  +  VRRAKLYYLR++
Sbjct:    2 NIIEQIEKEEIARLTANKTIPAFAPGDTVIVNVNVVEGNRKRVQAYEGVVIAKRNRGLNSSFIVRKISSGEGVERTFQLYSPLIAGIEVKRRGDVRRAKLYYLRER 107          
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RL19_RALEH (50S ribosomal protein L19 OS=Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=rplS PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.939e-16
Identity = 44/106 (41.51%), Postives = 71/106 (66.98%), Query Frame = 1
Query:  379 HIMQILDKEAVENVKSQREIPDIKPGYIVQLKV-VIPENKRRVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRDK 693
            +I++ ++KE +  + + + IP   PG  V + V V+  N++RV   +G+VIA+RN G++++F +R++ +G GVE  F LYSP I  I+V  +  VRRAKLYYLR +
Sbjct:    2 NIIEQIEKEEIARLTANKTIPAFAPGDTVVVSVNVVEGNRKRVQAYEGVVIAKRNRGLNSSFIVRKISSGEGVERTFQLYSPLIAAIEVKRRGDVRRAKLYYLRQR 107          
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RL19_METSB (50S ribosomal protein L19 OS=Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906) GN=rplS PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.939e-16
Identity = 45/106 (42.45%), Postives = 69/106 (65.09%), Query Frame = 1
Query:  379 HIMQILDKEAVENVKSQREIPDIKPGYIVQLKVVIPENKR-RVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRDK 693
            +I+  L+ E    + + + IP+ +PG  V + V + E +R RV   +G+ IAR   G++ +F +R++  G GVE +F +YSPNI  IKV+ + KVRRAKLYYLRD+
Sbjct:    2 NIIAELEAEQAAKLLAGKTIPEFQPGDTVIVNVKVKEGERTRVQAYEGVCIARNGGGLNESFTVRKISYGEGVERVFAIYSPNIDSIKVVRRGKVRRAKLYYLRDR 107          
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RL19_GLUOX (50S ribosomal protein L19 OS=Gluconobacter oxydans GN=rplS PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.939e-16
Identity = 44/106 (41.51%), Postives = 70/106 (66.04%), Query Frame = 1
Query:  379 HIMQILDKEAVENVKSQREIPDIKPGYIVQLKVVIPENKR-RVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRDK 693
            +I+Q  +   +E +   R +P+   G  V++ V + E  R RV + +G+VIAR N G+++ F +R++  G GVE +FPLY+P+I  I+V+ + KVRRAKLYYLR +
Sbjct:    2 NIIQQYEAREIERLSGVRAVPEFIAGDTVRVGVRVVEGTRERVQSFEGVVIARSNKGLNSNFTVRKISNGEGVERVFPLYAPSIASIEVVRRGKVRRAKLYYLRGR 107          
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RL19_GEOMG (50S ribosomal protein L19 OS=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) GN=rplS PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.939e-16
Identity = 46/102 (45.10%), Postives = 69/102 (67.65%), Query Frame = 1
Query:  385 MQILDKEAVENVKSQREIPDIKPGYIVQLKVVIPE-NKRRVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLR 687
            M  +D   +E +K  + IP  KPG  V++ V I E +K R+   +G+VIAR+N GI  +F +R++  G+GVE +FPL+SP++  I+V+ +  VRRAKLYYLR
Sbjct:    1 MNTIDMLELEQMK--KNIPPFKPGDTVKVHVKIVEGDKSRIQAFQGVVIARQNGGIRESFTVRKISNGIGVERVFPLHSPSLDAIEVITRGHVRRAKLYYLR 100          
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RL19_DICTD (50S ribosomal protein L19 OS=Dictyoglomus turgidum (strain Z-1310 / DSM 6724) GN=rplS PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.939e-16
Identity = 46/105 (43.81%), Postives = 75/105 (71.43%), Query Frame = 1
Query:  382 IMQILDKEAVENVKSQREIPDIKPGYIVQLKVVIPE-NKRRVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRDK 693
            I+Q L+KE ++     ++IP+I PG  V++   I E +K R+   +G+VIA+++ GI  T  +R++V GVGVE +FPL+SP + +I+V+ + +VRRAKLYYLR++
Sbjct:    4 IIQNLEKEYMK-----KDIPEIWPGDTVRVHYRIVEGDKERIQVYEGVVIAKKHGGIRETITVRKVVQGVGVERIFPLHSPLVEKIEVVRRGRVRRAKLYYLRER 103          
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RL19_DICT6 (50S ribosomal protein L19 OS=Dictyoglomus thermophilum (strain ATCC 35947 / DSM 3960 / H-6-12) GN=rplS PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.939e-16
Identity = 46/105 (43.81%), Postives = 75/105 (71.43%), Query Frame = 1
Query:  382 IMQILDKEAVENVKSQREIPDIKPGYIVQLKVVIPE-NKRRVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRDK 693
            I+Q L+KE ++     ++IP+I PG  V++   I E +K R+   +G+VIA+++ GI  T  +R++V GVGVE +FPL+SP + +I+V+ + +VRRAKLYYLR++
Sbjct:    4 IIQNLEKEYMK-----KDIPEIWPGDTVRVHYRIVEGDKERIQVYEGVVIAKKHGGIRETITVRKVVQGVGVERIFPLHSPLVEKIEVVRRGRVRRAKLYYLRER 103          
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RL19_CARHZ (50S ribosomal protein L19 OS=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) GN=rplS PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.939e-16
Identity = 41/96 (42.71%), Postives = 69/96 (71.88%), Query Frame = 1
Query:  403 EAVENVKSQREIPDIKPGYIVQLKV-VIPENKRRVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLR 687
            +++E  + ++++P+ +PG  V++   VI  N+ R+   +G+VI +R +G+S TF +RR+  G+GVE  FPL+SP I +I+V+ + KVRRA+LYYLR
Sbjct:    5 KSLEEEQLRKDLPEFRPGDTVKVYFKVIEGNRERIQPYEGVVIRKRGSGLSATFTVRRVSYGIGVERTFPLHSPRIEKIEVIRRGKVRRARLYYLR 100          
The following BLAST results are available for this feature:
BLAST of CF831998 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL19_CAUSK1.485e-1642.5950S ribosomal protein L19 OS=Caulobacter sp. (stra... [more]
RL19_RALME1.939e-1641.5150S ribosomal protein L19 OS=Ralstonia metallidura... [more]
RL19_RALEJ1.939e-1641.5150S ribosomal protein L19 OS=Ralstonia eutropha (s... [more]
RL19_RALEH1.939e-1641.5150S ribosomal protein L19 OS=Ralstonia eutropha (s... [more]
RL19_METSB1.939e-1642.4550S ribosomal protein L19 OS=Methylocella silvestr... [more]
RL19_GLUOX1.939e-1641.5150S ribosomal protein L19 OS=Gluconobacter oxydans... [more]
RL19_GEOMG1.939e-1645.1050S ribosomal protein L19 OS=Geobacter metalliredu... [more]
RL19_DICTD1.939e-1643.8150S ribosomal protein L19 OS=Dictyoglomus turgidum... [more]
RL19_DICT61.939e-1643.8150S ribosomal protein L19 OS=Dictyoglomus thermoph... [more]
RL19_CARHZ1.939e-1642.7150S ribosomal protein L19 OS=Carboxydothermus hydr... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01C09_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01C09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF831998 ID=CF831998; Name=CF831998; organism=Citrus sinensis; type=EST; length=741bp
GGGAGCATCCGATTAATTCAAAGGCATGCCCTTACCAGCTCAAACACTTG
TTCAATCCCAAACGGAGTCGTTTCAACCAAATCTGTCGGTCATTCGTTCC
ATTCTTTCAACAATTTTCTATCCCGCTCGCTCCACTTGTTAGCTACTCGC
TCGCAGGTAAAATATGGCTATCAAACCGAGTCTTGGGGTTCTTCGAACTA
TTACATTAGAACTAGTGGGCCTGGTTTGTTTCCACCAGCAATGATGGAGC
CACATTTTGCCAACAGGTGTATTTCAACATCGGAAAGTTCAGTTGAATCA
GCTTCATATCCTCCTGCTGCTGCTTCCTCTGATTTGGCTCCCCGCATCAA
ATTTAAGAGGCTTGATAAAACTGCCAGGCATATAATGCAGATTCTAGATA
AGGAAGCAGTGGAGAATGTGAAGTCACAGAGGGAGATCCCCGATATAAAG
CCTGGTTATATCGTGCAACTAAAAGTGGTAATTCCAGAGAACAAGAGACG
TGTTTCAACTTTAAAGGGTATTGTTATAGCAAGGCGTAATGCTGGTATAA
GTACTACATTTAGATTGAGGAGGCTGGTAGCAGGGGTTGGAGTCGAATCT
CTTTTCCCTTTGTACTCACCTAATATACTAGAAATAAAGGTGCTGGACAA
GAAGAAAGTGAGGAGGGCCAAGCTTTACTATCTGAGGGATAAGCTGAATC
CACTTAGAAATAAATAAGAAGCTTTATTGGTGGGAGGATTC
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