CF831998

Overview
NameCF831998
Unique NameCF831998
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length741
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11031 contig Csv1_Contig11031:39..779. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RL19_ALKOO (50S ribosomal protein L19 OS=Alkaliphilus oremlandii (strain OhILAs) GN=rplS PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.939e-16
Identity = 46/105 (43.81%), Postives = 70/105 (66.67%), Query Frame = 1
Query:  385 MQILDKEAVENVKSQREIPDIKPGYIVQLKVVIPENKR-RVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRDKL 696
            M IL   A E +K  +++P+   G  V++ V I E  R R+   +GIVI R+  GI+ TF +RR+ +GVGVE  FP++SP + +++V  + +VRRAKLYYLRD++
Sbjct:    1 MDILRTLASEQLK--KDVPEFSNGDTVKVHVKIKEGSRERIQIFEGIVIKRQGGGIAETFTVRRIASGVGVERTFPVHSPRVEKVEVTRRGQVRRAKLYYLRDRV 103          
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RL19_TROWT (50S ribosomal protein L19 OS=Tropheryma whipplei (strain Twist) GN=rplS PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.533e-16
Identity = 45/96 (46.88%), Postives = 65/96 (67.71%), Query Frame = 1
Query:  403 EAVENVKSQREIPDIKPGYIVQLKVVIPENKR-RVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLR 687
            +A++ +  + +IPD  PG  V++ V I E  R RV   +G+VIARR  G+  TF +R++   VGVE +FPL+SP+I  I+V+ K  VRRAKLYY+R
Sbjct:    5 DALDALSIKADIPDFSPGDTVRVYVNITEGDRSRVQVFQGVVIARRGFGVRQTFTVRKISFQVGVERIFPLHSPSINRIEVVTKGSVRRAKLYYIR 100          
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RL19_TROW8 (50S ribosomal protein L19 OS=Tropheryma whipplei (strain TW08/27) GN=rplS PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.533e-16
Identity = 45/96 (46.88%), Postives = 65/96 (67.71%), Query Frame = 1
Query:  403 EAVENVKSQREIPDIKPGYIVQLKVVIPENKR-RVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLR 687
            +A++ +  + +IPD  PG  V++ V I E  R RV   +G+VIARR  G+  TF +R++   VGVE +FPL+SP+I  I+V+ K  VRRAKLYY+R
Sbjct:    5 DALDALSIKADIPDFSPGDTVRVYVNITEGDRSRVQVFQGVVIARRGFGVRQTFTVRKISFQVGVERIFPLHSPSINRIEVVTKGSVRRAKLYYIR 100          
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RL19_STAAN (50S ribosomal protein L19 OS=Staphylococcus aureus (strain N315) GN=rplS PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.533e-16
Identity = 45/96 (46.88%), Postives = 65/96 (67.71%), Query Frame = 1
Query:  403 EAVENVKSQREIPDIKPGYIVQLKVVIPENKR-RVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLR 687
            EAV   + + ++P  +PG  +++ V I E  R R+   +GIVI RR  G+S TF +R++ +GVGVE  FPL++P I +I+V  + KVRRAKLYYLR
Sbjct:    8 EAVTKSQLRTDLPSFRPGDTLRVHVRIIEGTRERIQVFEGIVIKRRGGGVSETFTVRKISSGVGVERTFPLHTPKIEKIEVKRRGKVRRAKLYYLR 103          
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RL19_STAAM (50S ribosomal protein L19 OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=rplS PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.533e-16
Identity = 45/96 (46.88%), Postives = 65/96 (67.71%), Query Frame = 1
Query:  403 EAVENVKSQREIPDIKPGYIVQLKVVIPENKR-RVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLR 687
            EAV   + + ++P  +PG  +++ V I E  R R+   +GIVI RR  G+S TF +R++ +GVGVE  FPL++P I +I+V  + KVRRAKLYYLR
Sbjct:    8 EAVTKSQLRTDLPSFRPGDTLRVHVRIIEGTRERIQVFEGIVIKRRGGGVSETFTVRKISSGVGVERTFPLHTPKIEKIEVKRRGKVRRAKLYYLR 103          
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RL19_STAA9 (50S ribosomal protein L19 OS=Staphylococcus aureus (strain JH9) GN=rplS PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.533e-16
Identity = 45/96 (46.88%), Postives = 65/96 (67.71%), Query Frame = 1
Query:  403 EAVENVKSQREIPDIKPGYIVQLKVVIPENKR-RVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLR 687
            EAV   + + ++P  +PG  +++ V I E  R R+   +GIVI RR  G+S TF +R++ +GVGVE  FPL++P I +I+V  + KVRRAKLYYLR
Sbjct:    8 EAVTKSQLRTDLPSFRPGDTLRVHVRIIEGTRERIQVFEGIVIKRRGGGVSETFTVRKISSGVGVERTFPLHTPKIEKIEVKRRGKVRRAKLYYLR 103          
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RL19_STAA2 (50S ribosomal protein L19 OS=Staphylococcus aureus (strain JH1) GN=rplS PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.533e-16
Identity = 45/96 (46.88%), Postives = 65/96 (67.71%), Query Frame = 1
Query:  403 EAVENVKSQREIPDIKPGYIVQLKVVIPENKR-RVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLR 687
            EAV   + + ++P  +PG  +++ V I E  R R+   +GIVI RR  G+S TF +R++ +GVGVE  FPL++P I +I+V  + KVRRAKLYYLR
Sbjct:    8 EAVTKSQLRTDLPSFRPGDTLRVHVRIIEGTRERIQVFEGIVIKRRGGGVSETFTVRKISSGVGVERTFPLHTPKIEKIEVKRRGKVRRAKLYYLR 103          
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RL19_STAA1 (50S ribosomal protein L19 OS=Staphylococcus aureus (strain Mu3 / ATCC 700698) GN=rplS PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.533e-16
Identity = 45/96 (46.88%), Postives = 65/96 (67.71%), Query Frame = 1
Query:  403 EAVENVKSQREIPDIKPGYIVQLKVVIPENKR-RVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLR 687
            EAV   + + ++P  +PG  +++ V I E  R R+   +GIVI RR  G+S TF +R++ +GVGVE  FPL++P I +I+V  + KVRRAKLYYLR
Sbjct:    8 EAVTKSQLRTDLPSFRPGDTLRVHVRIIEGTRERIQVFEGIVIKRRGGGVSETFTVRKISSGVGVERTFPLHTPKIEKIEVKRRGKVRRAKLYYLR 103          
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RL19_OCHA4 (50S ribosomal protein L19 OS=Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168) GN=rplS PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.533e-16
Identity = 42/103 (40.78%), Postives = 70/103 (67.96%), Query Frame = 1
Query:  382 IMQILDKEAVENVKSQREIPDIKPGYIVQLKVVIPENKR-RVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLR 687
            I++ L+ E    ++ +R++PD +PG  V+++V + E  R RV   +G+ IAR  AG++  F +R++  G GVE +FP+YSP +  ++++ + KVRRAKLYYLR
Sbjct:    4 IIRQLEAEQAAKIEEKRKLPDFQPGDTVRVQVRVTEGTRTRVQAYEGVCIARSGAGLNENFTVRKISYGEGVERVFPVYSPIVEGVELVRRGKVRRAKLYYLR 106          
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RL19_NOCFA (50S ribosomal protein L19 OS=Nocardia farcinica GN=rplS PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.533e-16
Identity = 44/95 (46.32%), Postives = 62/95 (65.26%), Query Frame = 1
Query:  409 VENVKSQREIPDIKPGYIVQLKV-VIPENKRRVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRD 690
            V+    + ++PD +PG  + + V VI  +K R+   KG+VI R+  GI  TF +R++  GVGVE  FP++SPNI  I V+ +  VRRAKLYYLRD
Sbjct:    7 VDEKSLRSDVPDFRPGDTLNVHVKVIEGSKERIQVFKGVVIRRQGGGIRETFTVRKVSFGVGVERTFPVHSPNIDHIDVVTRGDVRRAKLYYLRD 101          
The following BLAST results are available for this feature:
BLAST of CF831998 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL19_ALKOO1.939e-1643.8150S ribosomal protein L19 OS=Alkaliphilus oremland... [more]
RL19_TROWT2.533e-1646.8850S ribosomal protein L19 OS=Tropheryma whipplei (... [more]
RL19_TROW82.533e-1646.8850S ribosomal protein L19 OS=Tropheryma whipplei (... [more]
RL19_STAAN2.533e-1646.8850S ribosomal protein L19 OS=Staphylococcus aureus... [more]
RL19_STAAM2.533e-1646.8850S ribosomal protein L19 OS=Staphylococcus aureus... [more]
RL19_STAA92.533e-1646.8850S ribosomal protein L19 OS=Staphylococcus aureus... [more]
RL19_STAA22.533e-1646.8850S ribosomal protein L19 OS=Staphylococcus aureus... [more]
RL19_STAA12.533e-1646.8850S ribosomal protein L19 OS=Staphylococcus aureus... [more]
RL19_OCHA42.533e-1640.7850S ribosomal protein L19 OS=Ochrobactrum anthropi... [more]
RL19_NOCFA2.533e-1646.3250S ribosomal protein L19 OS=Nocardia farcinica GN... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01C09_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01C09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF831998 ID=CF831998; Name=CF831998; organism=Citrus sinensis; type=EST; length=741bp
GGGAGCATCCGATTAATTCAAAGGCATGCCCTTACCAGCTCAAACACTTG
TTCAATCCCAAACGGAGTCGTTTCAACCAAATCTGTCGGTCATTCGTTCC
ATTCTTTCAACAATTTTCTATCCCGCTCGCTCCACTTGTTAGCTACTCGC
TCGCAGGTAAAATATGGCTATCAAACCGAGTCTTGGGGTTCTTCGAACTA
TTACATTAGAACTAGTGGGCCTGGTTTGTTTCCACCAGCAATGATGGAGC
CACATTTTGCCAACAGGTGTATTTCAACATCGGAAAGTTCAGTTGAATCA
GCTTCATATCCTCCTGCTGCTGCTTCCTCTGATTTGGCTCCCCGCATCAA
ATTTAAGAGGCTTGATAAAACTGCCAGGCATATAATGCAGATTCTAGATA
AGGAAGCAGTGGAGAATGTGAAGTCACAGAGGGAGATCCCCGATATAAAG
CCTGGTTATATCGTGCAACTAAAAGTGGTAATTCCAGAGAACAAGAGACG
TGTTTCAACTTTAAAGGGTATTGTTATAGCAAGGCGTAATGCTGGTATAA
GTACTACATTTAGATTGAGGAGGCTGGTAGCAGGGGTTGGAGTCGAATCT
CTTTTCCCTTTGTACTCACCTAATATACTAGAAATAAAGGTGCTGGACAA
GAAGAAAGTGAGGAGGGCCAAGCTTTACTATCTGAGGGATAAGCTGAATC
CACTTAGAAATAAATAAGAAGCTTTATTGGTGGGAGGATTC
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