CF831998

Overview
NameCF831998
Unique NameCF831998
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length741
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11031 contig Csv1_Contig11031:39..779. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RL19_HELMI (50S ribosomal protein L19 OS=Heliobacterium modesticaldum (strain ATCC 51547 / Ice1) GN=rplS PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.533e-16
Identity = 44/95 (46.32%), Postives = 66/95 (69.47%), Query Frame = 1 
Query:  409 VENVKSQREIPDIKPGYIVQLKVVIPE-NKRRVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRD 690
            +E  + +++IPD KPG  V++ V + E N+ R+   +GIVI RR  G+S TF +RR+  GV VE  F ++SP + +I+V+ + +VRRAKLYYLRD
Sbjct:    8 IEAEQLRKDIPDFKPGDTVKVHVKVVEGNRERIQLFEGIVIKRRGGGLSETFTVRRVSYGVAVERTFLVHSPRLDKIEVVRRGRVRRAKLYYLRD 102
[Close]
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RL19_STACT (50S ribosomal protein L19 OS=Staphylococcus carnosus (strain TM300) GN=rplS PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.308e-16
Identity = 45/97 (46.39%), Postives = 65/97 (67.01%), Query Frame = 1 
Query:  403 EAVENVKSQREIPDIKPGYIVQLKVVIPENKR-RVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRD 690
            EAV   + + ++P  +PG  V++ V I E  R R+   +G+VI R   GIS TF +R++ +GVGVE  FPL++P I +I+V  + KVRRAKLYYLR+
Sbjct:    8 EAVTKSQLRTDLPTFRPGDTVRVHVRIVEGTRERIQVFEGVVIKRHGGGISETFTVRKISSGVGVERTFPLHTPKIEKIEVKRRGKVRRAKLYYLRN 104
[Close]
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RL19_STAAW (50S ribosomal protein L19 OS=Staphylococcus aureus (strain MW2) GN=rplS PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.308e-16
Identity = 44/96 (45.83%), Postives = 65/96 (67.71%), Query Frame = 1 
Query:  403 EAVENVKSQREIPDIKPGYIVQLKVVIPENKR-RVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLR 687
            EAV   + + ++P  +PG  +++ V I E  R R+   +G+VI RR  G+S TF +R++ +GVGVE  FPL++P I +I+V  + KVRRAKLYYLR
Sbjct:    8 EAVTKSQLRTDLPSFRPGDTLRVHVRIIEGTRERIQVFEGVVIKRRGGGVSETFTVRKISSGVGVERTFPLHTPKIEKIEVKRRGKVRRAKLYYLR 103
[Close]
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RL19_STAAS (50S ribosomal protein L19 OS=Staphylococcus aureus (strain MSSA476) GN=rplS PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.308e-16
Identity = 44/96 (45.83%), Postives = 65/96 (67.71%), Query Frame = 1 
Query:  403 EAVENVKSQREIPDIKPGYIVQLKVVIPENKR-RVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLR 687
            EAV   + + ++P  +PG  +++ V I E  R R+   +G+VI RR  G+S TF +R++ +GVGVE  FPL++P I +I+V  + KVRRAKLYYLR
Sbjct:    8 EAVTKSQLRTDLPSFRPGDTLRVHVRIIEGTRERIQVFEGVVIKRRGGGVSETFTVRKISSGVGVERTFPLHTPKIEKIEVKRRGKVRRAKLYYLR 103
[Close]
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RL19_STAAR (50S ribosomal protein L19 OS=Staphylococcus aureus (strain MRSA252) GN=rplS PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.308e-16
Identity = 44/96 (45.83%), Postives = 65/96 (67.71%), Query Frame = 1 
Query:  403 EAVENVKSQREIPDIKPGYIVQLKVVIPENKR-RVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLR 687
            EAV   + + ++P  +PG  +++ V I E  R R+   +G+VI RR  G+S TF +R++ +GVGVE  FPL++P I +I+V  + KVRRAKLYYLR
Sbjct:    8 EAVTKSQLRTDLPSFRPGDTLRVHVRIIEGTRERIQVFEGVVIKRRGGGVSETFTVRKISSGVGVERTFPLHTPKIEKIEVKRRGKVRRAKLYYLR 103
[Close]
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RL19_STAAE (50S ribosomal protein L19 OS=Staphylococcus aureus (strain Newman) GN=rplS PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.308e-16
Identity = 44/96 (45.83%), Postives = 65/96 (67.71%), Query Frame = 1 
Query:  403 EAVENVKSQREIPDIKPGYIVQLKVVIPENKR-RVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLR 687
            EAV   + + ++P  +PG  +++ V I E  R R+   +G+VI RR  G+S TF +R++ +GVGVE  FPL++P I +I+V  + KVRRAKLYYLR
Sbjct:    8 EAVTKSQLRTDLPSFRPGDTLRVHVRIIEGTRERIQVFEGVVIKRRGGGVSETFTVRKISSGVGVERTFPLHTPKIEKIEVKRRGKVRRAKLYYLR 103
[Close]
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RL19_STAAC (50S ribosomal protein L19 OS=Staphylococcus aureus (strain COL) GN=rplS PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.308e-16
Identity = 44/96 (45.83%), Postives = 65/96 (67.71%), Query Frame = 1 
Query:  403 EAVENVKSQREIPDIKPGYIVQLKVVIPENKR-RVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLR 687
            EAV   + + ++P  +PG  +++ V I E  R R+   +G+VI RR  G+S TF +R++ +GVGVE  FPL++P I +I+V  + KVRRAKLYYLR
Sbjct:    8 EAVTKSQLRTDLPSFRPGDTLRVHVRIIEGTRERIQVFEGVVIKRRGGGVSETFTVRKISSGVGVERTFPLHTPKIEKIEVKRRGKVRRAKLYYLR 103
[Close]
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RL19_STAAB (50S ribosomal protein L19 OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) GN=rplS PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.308e-16
Identity = 44/96 (45.83%), Postives = 65/96 (67.71%), Query Frame = 1 
Query:  403 EAVENVKSQREIPDIKPGYIVQLKVVIPENKR-RVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLR 687
            EAV   + + ++P  +PG  +++ V I E  R R+   +G+VI RR  G+S TF +R++ +GVGVE  FPL++P I +I+V  + KVRRAKLYYLR
Sbjct:    8 EAVTKSQLRTDLPSFRPGDTLRVHVRIIEGTRERIQVFEGVVIKRRGGGVSETFTVRKISSGVGVERTFPLHTPKIEKIEVKRRGKVRRAKLYYLR 103
[Close]
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RL19_STAA8 (50S ribosomal protein L19 OS=Staphylococcus aureus (strain NCTC 8325) GN=rplS PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.308e-16
Identity = 44/96 (45.83%), Postives = 65/96 (67.71%), Query Frame = 1 
Query:  403 EAVENVKSQREIPDIKPGYIVQLKVVIPENKR-RVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLR 687
            EAV   + + ++P  +PG  +++ V I E  R R+   +G+VI RR  G+S TF +R++ +GVGVE  FPL++P I +I+V  + KVRRAKLYYLR
Sbjct:    8 EAVTKSQLRTDLPSFRPGDTLRVHVRIIEGTRERIQVFEGVVIKRRGGGVSETFTVRKISSGVGVERTFPLHTPKIEKIEVKRRGKVRRAKLYYLR 103
[Close]
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RL19_STAA3 (50S ribosomal protein L19 OS=Staphylococcus aureus (strain USA300) GN=rplS PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.308e-16
Identity = 44/96 (45.83%), Postives = 65/96 (67.71%), Query Frame = 1 
Query:  403 EAVENVKSQREIPDIKPGYIVQLKVVIPENKR-RVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLR 687
            EAV   + + ++P  +PG  +++ V I E  R R+   +G+VI RR  G+S TF +R++ +GVGVE  FPL++P I +I+V  + KVRRAKLYYLR
Sbjct:    8 EAVTKSQLRTDLPSFRPGDTLRVHVRIIEGTRERIQVFEGVVIKRRGGGVSETFTVRKISSGVGVERTFPLHTPKIEKIEVKRRGKVRRAKLYYLR 103
The following BLAST results are available for this feature:
BLAST of CF831998 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL19_HELMI2.533e-1646.3250S ribosomal protein L19 OS=Heliobacterium modest... [more]
RL19_STACT3.308e-1646.3950S ribosomal protein L19 OS=Staphylococcus carnos... [more]
RL19_STAAW3.308e-1645.8350S ribosomal protein L19 OS=Staphylococcus aureus... [more]
RL19_STAAS3.308e-1645.8350S ribosomal protein L19 OS=Staphylococcus aureus... [more]
RL19_STAAR3.308e-1645.8350S ribosomal protein L19 OS=Staphylococcus aureus... [more]
RL19_STAAE3.308e-1645.8350S ribosomal protein L19 OS=Staphylococcus aureus... [more]
RL19_STAAC3.308e-1645.8350S ribosomal protein L19 OS=Staphylococcus aureus... [more]
RL19_STAAB3.308e-1645.8350S ribosomal protein L19 OS=Staphylococcus aureus... [more]
RL19_STAA83.308e-1645.8350S ribosomal protein L19 OS=Staphylococcus aureus... [more]
RL19_STAA33.308e-1645.8350S ribosomal protein L19 OS=Staphylococcus aureus... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01C09_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01C09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF831998 ID=CF831998; Name=CF831998; organism=Citrus sinensis; type=EST; length=741bp
GGGAGCATCCGATTAATTCAAAGGCATGCCCTTACCAGCTCAAACACTTG
TTCAATCCCAAACGGAGTCGTTTCAACCAAATCTGTCGGTCATTCGTTCC
ATTCTTTCAACAATTTTCTATCCCGCTCGCTCCACTTGTTAGCTACTCGC
TCGCAGGTAAAATATGGCTATCAAACCGAGTCTTGGGGTTCTTCGAACTA
TTACATTAGAACTAGTGGGCCTGGTTTGTTTCCACCAGCAATGATGGAGC
CACATTTTGCCAACAGGTGTATTTCAACATCGGAAAGTTCAGTTGAATCA
GCTTCATATCCTCCTGCTGCTGCTTCCTCTGATTTGGCTCCCCGCATCAA
ATTTAAGAGGCTTGATAAAACTGCCAGGCATATAATGCAGATTCTAGATA
AGGAAGCAGTGGAGAATGTGAAGTCACAGAGGGAGATCCCCGATATAAAG
CCTGGTTATATCGTGCAACTAAAAGTGGTAATTCCAGAGAACAAGAGACG
TGTTTCAACTTTAAAGGGTATTGTTATAGCAAGGCGTAATGCTGGTATAA
GTACTACATTTAGATTGAGGAGGCTGGTAGCAGGGGTTGGAGTCGAATCT
CTTTTCCCTTTGTACTCACCTAATATACTAGAAATAAAGGTGCTGGACAA
GAAGAAAGTGAGGAGGGCCAAGCTTTACTATCTGAGGGATAAGCTGAATC
CACTTAGAAATAAATAAGAAGCTTTATTGGTGGGAGGATTC
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