CF832236

Overview
NameCF832236
Unique NameCF832236
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length672
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6048 contig Csv1_Contig6048:24..695. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832236 vs. ExPASy Swiss-Prot
Match: RLA4_SCHPO (60S acidic ribosomal protein P2-beta OS=Schizosaccharomyces pombe GN=rpp202 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.685e-11
Identity = 34/62 (54.84%), Postives = 45/62 (72.58%), Query Frame = 1
Query:   16 MKVVAAYPLAVLGGNTSPSADDIKGILGSVGADCEDNRLELLLSEVKGKDITELIASGREKL 201
            MK +AAY L  +GG  SPSA DI+ +L +VG + E  R+E L+SE+ GK+I ELIA+G EKL
Sbjct:    1 MKYLAAYLLLTVGGKQSPSASDIESVLSTVGIEAEAERVESLISELNGKNIEELIAAGNEKL 62          
BLAST of CF832236 vs. ExPASy Swiss-Prot
Match: RLA2_PODAN (60S acidic ribosomal protein P2 OS=Podospora anserina PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.685e-11
Identity = 33/62 (53.23%), Postives = 45/62 (72.58%), Query Frame = 1
Query:   16 MKVVAAYPLAVLGGNTSPSADDIKGILGSVGADCEDNRLELLLSEVKGKDITELIASGREKL 201
            MK +AAY L  LGG  +PSA D+K +L SVG + + +RL+ L+SE++GKD+ ELIA G  KL
Sbjct:    1 MKHLAAYLLLTLGGKATPSAADVKAVLESVGIEADSDRLDKLISELEGKDVNELIAEGSSKL 62          
BLAST of CF832236 vs. ExPASy Swiss-Prot
Match: RLA2_BOVIN (60S acidic ribosomal protein P2 OS=Bos taurus GN=RPLP2 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.685e-11
Identity = 35/62 (56.45%), Postives = 47/62 (75.81%), Query Frame = 1
Query:   16 MKVVAAYPLAVLGGNTSPSADDIKGILGSVGADCEDNRLELLLSEVKGKDITELIASGREKL 201
            M+ VA+Y LA LGGN+SPSA DIK IL SVG + +D+RL  ++SE+ GK+I ++IA G  KL
Sbjct:    1 MRYVASYLLAALGGNSSPSAKDIKKILDSVGIEADDDRLNKVISELHGKNIEDVIAQGIGKL 62          
BLAST of CF832236 vs. ExPASy Swiss-Prot
Match: RLA2_RAT (60S acidic ribosomal protein P2 OS=Rattus norvegicus GN=Rplp2 PE=1 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 5.982e-11
Identity = 34/62 (54.84%), Postives = 46/62 (74.19%), Query Frame = 1
Query:   16 MKVVAAYPLAVLGGNTSPSADDIKGILGSVGADCEDNRLELLLSEVKGKDITELIASGREKL 201
            M+ VA+Y LA LGGN++PSA DIK IL SVG + +D RL  ++SE+ GK+I ++IA G  KL
Sbjct:    1 MRYVASYLLAALGGNSNPSAKDIKKILDSVGIEADDERLNKVISELNGKNIEDVIAQGVGKL 62          
The following BLAST results are available for this feature:
BLAST of CF832236 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 24
Match NameE-valueIdentityDescription
RLA4_SCHPO2.685e-1154.8460S acidic ribosomal protein P2-beta OS=Schizosacc... [more]
RLA2_PODAN2.685e-1153.2360S acidic ribosomal protein P2 OS=Podospora anser... [more]
RLA2_BOVIN2.685e-1156.4560S acidic ribosomal protein P2 OS=Bos taurus GN=R... [more]
RLA2_RAT5.982e-1154.8460S acidic ribosomal protein P2 OS=Rattus norvegic... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01I14_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01I14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832236 ID=CF832236; Name=CF832236; organism=Citrus sinensis; type=EST; length=672bp
CTCCCGAGAAAGAAAATGAAGGTGGTGGCAGCATATCCGTTGGCTGTTTT
GGGAGGAAACACCAGCCCTTCCGCCGATGATATTAAGGGAATCCTTGGCT
CTGTTGGAGCTGATTGCGAGGACAATAGGCTTGAGCTCCTTCTATCAGAA
GTTAAAGGCAAAGACATAACTGAGCTTATTGCATCTGGGCGGGAGAAATT
GGCCTCAGTGCCTTCTGGTGGTGGAGTTGCAGTTGCTGCTGCTCCATCTG
CCGGTGGTGCAGGCGCTGCCCCAGCTGCTGCTGAGGCCAAGAAAGAGGAG
AAAGTGGAGGAGAAAGAAGAATCTGATGATGATATGGGTTTCAGTCTTTT
CGACTAGAGAGCTCTTCAGCATTTTTTTCACCTCTTTCTCCTCAATTGGG
AGCTTCTAACTGGACTTAAAAGTTTTGTTATTTTGGAGTTCTGTAGTTTT
TAGTTTATATAATCCTTAGATGAAACTTTTGACGGGTTAAGTTGTGGCTC
CATATTGATATGCTGCTTTGTTATGCCTGTTCAGAGATTTATATATCTGG
CAACTATCATTTTCTATTATTTCATCATACAAATGACTCCATGGATGTTT
CTGTCAGAAGTTTAGATCCATTCCATGTTCTGCTTGAATGGAAACATATG
CAATTGAAAAAAAAAAAAAAAA
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