CF832338

Overview
NameCF832338
Unique NameCF832338
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length834
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832338 vs. ExPASy Swiss-Prot
Match: PP354_ARATH (Pentatricopeptide repeat-containing protein At4g37380, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H48 PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.333e-19
Identity = 48/107 (44.86%), Postives = 63/107 (58.88%), Query Frame = -2
Query:  516 VLEGFYEKMKAVGFA-GSEYVSMDKSEASKAEIFCGHSEMLAVAFGLINTAPGMPIWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHFKDGTCSCGDEGYW 833
            +L    E++K+ G+   +  V  D  E  K +    HSE LA+A+GLI+T PG P+ + KNL  C  CH   K ISKI  R I +RD   FHHF DG+CSCGD  +W
Sbjct:  528 MLRKISERIKSHGYVPNTNTVLQDLEETEKEQSLQVHSERLAIAYGLISTKPGSPLKIFKNLRVCSDCHTVTKLISKITGRKIVMRDRNRFHHFTDGSCSCGD--FW 632          
BLAST of CF832338 vs. ExPASy Swiss-Prot
Match: PP301_ARATH (Pentatricopeptide repeat-containing protein At4g02750 OS=Arabidopsis thaliana GN=PCMP-H24 PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.740e-19
Identity = 48/106 (45.28%), Postives = 63/106 (59.43%), Query Frame = -2
Query:  516 LEGFYEKMKAVGFAGSEYVSM-DKSEASKAEIFCGHSEMLAVAFGLINTAPGMPIWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHFKDGTCSCGDEGYW 830
            LE    +MK  G+     V + D  E  K  +   HSE LAVA+G++  + G PI V KNL  C  CHN +K++++I  R I +RD   FHHFKDG+CSCGD  YW
Sbjct:  678 LEELDLRMKKAGYVSKTSVVLHDVEEEEKERMVRYHSERLAVAYGIMRVSSGRPIRVIKNLRVCEDCHNAIKYMARITGRLIILRDNNRFHHFKDGSCSCGD--YW 781          
BLAST of CF832338 vs. ExPASy Swiss-Prot
Match: PPR32_ARATH (Pentatricopeptide repeat-containing protein At1g11290 OS=Arabidopsis thaliana GN=PCMP-H40 PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.273e-19
Identity = 47/106 (44.34%), Postives = 61/106 (57.55%), Query Frame = -2
Query:  516 FYEKM----KAVGFAGSEYVSMDKSEASKAEIFCGHSEMLAVAFGLINTAPGMPIWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHFKDGTCSCGDEGYW 821
            F EK+    K  G+     + +      K ++   HSE LA++FGL+NT  G  I V KNL  C  CHN  K+IS +  R+I VRD + FHHFK+G CSCGD  YW
Sbjct:  706 FLEKLICHIKEAGYVPDTNLVLGVENDVKEQLLSTHSEKLAISFGLLNTTAGTTIHVRKNLRVCADCHNATKYISLVTGREIVVRDMQRFHHFKNGACSCGD--YW 809          
BLAST of CF832338 vs. ExPASy Swiss-Prot
Match: PPR10_ARATH (Pentatricopeptide repeat-containing protein At1g04840 OS=Arabidopsis thaliana GN=PCMP-H64 PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.877e-19
Identity = 44/91 (48.35%), Postives = 57/91 (62.64%), Query Frame = -2
Query:  516 GSEYVSMDKSEASKAEIFCGHSEMLAVAFGLINTAPGMPIWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHFKDGTCSCGDEGYW 788
            G+++   D  E  K  +   HSE LA+  G + TAPG  I + KNL  C  CH+ +K++SKI +RDI +RD   FHHFKDG CSCGD  YW
Sbjct:  577 GADWSIHDIEEEEKENVTGIHSEKLALTLGFLRTAPGTTIRIIKNLRICGDCHSLMKYVSKISQRDILLRDARQFHHFKDGRCSCGD--YW 665          
BLAST of CF832338 vs. ExPASy Swiss-Prot
Match: PP108_ARATH (Putative pentatricopeptide repeat-containing protein At1g68930 OS=Arabidopsis thaliana GN=PCMP-H22 PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.877e-19
Identity = 47/90 (52.22%), Postives = 55/90 (61.11%), Query Frame = -2
Query:  516 SEYVSMDKSEASKAEIFCGHSEMLAVAFGLINTAPGMPIWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHFKDGTCSCGDEGYW 785
            + +V  D  EA K ++   HSE LA+AFGLI    G PI V KNL  C  CHN  K IS +  R+I VRD   FH FKDGTCSCGD  +W
Sbjct:  656 TSFVHHDVEEAVKVKMLNYHSERLAIAFGLIFVPSGQPIRVGKNLRVCVDCHNATKHISSVTGREILVRDAVRFHRFKDGTCSCGD--FW 743          
BLAST of CF832338 vs. ExPASy Swiss-Prot
Match: PP428_ARATH (Pentatricopeptide repeat-containing protein At5g50990 OS=Arabidopsis thaliana GN=PCMP-H59 PE=2 SV=2)

HSP 1 Score: 95.1301 bits (235), Expect = 5.064e-19
Identity = 48/107 (44.86%), Postives = 66/107 (61.68%), Query Frame = -2
Query:  516 VLEGFYEKMKAVGFAG-SEYVSMDKSEASKAEIFCGHSEMLAVAFGLINTAPGMPIWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHFKDGTCSCGDEGYW 833
            VLEG  +K K+ GF   ++ V MD SE  K E    HSE LA+A+ ++ ++PG  I + KN+  C  CHN +K +SK++ R I +RD   FH F+DG CSC D  YW
Sbjct:  430 VLEGLIQKTKSQGFVSDTDLVLMDVSEEEKEENLNYHSEKLALAYVILKSSPGTEIRIQKNIRMCSDCHNWIKAVSKLLNRVIIMRDRIRFHRFEDGLCSCRD--YW 534          
BLAST of CF832338 vs. ExPASy Swiss-Prot
Match: PP219_ARATH (Putative pentatricopeptide repeat-containing protein At3g08820 OS=Arabidopsis thaliana GN=PCMP-H84 PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 5.064e-19
Identity = 51/106 (48.11%), Postives = 62/106 (58.49%), Query Frame = -2
Query:  516 LEGFYEKMKAVGFAGS-EYVSMDKSEASKAEIFCGHSEMLAVAFGLINTAPGMPIWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHFKDGTCSCGDEGYW 830
            LE    +M+ +GF  + E+V  D  E  K  +   HSE LAVA GLI+T  G  I V KNL  C  CH  +K ISKI RR+I VRD   FH F +G+CSC D  YW
Sbjct:  582 LEDLGNEMRLMGFVPTTEFVFFDVEEEEKERVLGYHSEKLAVALGLISTDHGQVIRVVKNLRVCGDCHEVMKLISKITRREIVVRDNNRFHCFTNGSCSCND--YW 685          
BLAST of CF832338 vs. ExPASy Swiss-Prot
Match: PP172_ARATH (Pentatricopeptide repeat-containing protein At2g27610 OS=Arabidopsis thaliana GN=PCMP-H60 PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 6.614e-19
Identity = 48/107 (44.86%), Postives = 63/107 (58.88%), Query Frame = -2
Query:  516 LEGFYEKMKAVGFA-GSEYVSMDKSEASKAEIFCGHSEMLAVAFGLINTAPGMPIWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHF-KDGTCSCGDEGYW 830
            LE    ++K +G+   + YV  D  +  K  +   HSE LA+AFGLI T  G P+ + KNL  C  CH  +K I+KI  R+I VRD+  FHHF  DG CSCGD  +W
Sbjct:  764 LEDLSTRLKDLGYEPDTSYVLQDIDDEHKEAVLAQHSERLAIAFGLIATPKGSPLLIIKNLRVCGDCHLVIKLIAKIEEREIVVRDSNRFHHFSSDGVCSCGD--FW 868          
BLAST of CF832338 vs. ExPASy Swiss-Prot
Match: PP274_ARATH (Pentatricopeptide repeat-containing protein At3g49710 OS=Arabidopsis thaliana GN=PCMP-H79 PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 8.638e-19
Identity = 52/109 (47.71%), Postives = 66/109 (60.55%), Query Frame = -2
Query:  516 LEGFYEKMKAVGFAGSEYVSM---DKSEASKAEIFCGH-SEMLAVAFGLINTAPGMPIWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHFKDGTCSCGDEGYW 830
            LE   +KMK VG+   +  +M   D++     E+  GH SE LAVAFGL++T  G  + V KNL  C  CHN +KF+S +  R+I VRD   FH FKDG CSCGD  YW
Sbjct:  615 LEEMMKKMKKVGYVMDKKWAMVKEDEAGEGDEEMRLGHHSEKLAVAFGLMSTRDGEELVVVKNLRICGDCHNAIKFMSAVAGREIIVRDNLRFHCFKDGKCSCGD--YW 721          
BLAST of CF832338 vs. ExPASy Swiss-Prot
Match: PP272_ARATH (Pentatricopeptide repeat-containing protein At3g49170, chloroplastic OS=Arabidopsis thaliana GN=EMB2261 PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 8.638e-19
Identity = 43/84 (51.19%), Postives = 54/84 (64.29%), Query Frame = -2
Query:  516 DKSEASKAEIFCGHSEMLAVAFGLINTAPGMPIWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHFKDGTCSCGDEGYW 767
            +  EA K  +   HSE +AVAFGLI+T+   P+ V KNL  C  CHN +K+IS +  R+I +RD   FHHFKDG CSC D  YW
Sbjct:  769 ENDEAEKERLLYQHSEKIAVAFGLISTSKSRPVRVFKNLRVCGDCHNAMKYISTVSGREIVLRDLNRFHHFKDGKCSCND--YW 850          
The following BLAST results are available for this feature:
BLAST of CF832338 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
PP354_ARATH1.333e-1944.86Pentatricopeptide repeat-containing protein At4g37... [more]
PP301_ARATH1.740e-1945.28Pentatricopeptide repeat-containing protein At4g02... [more]
PPR32_ARATH2.273e-1944.34Pentatricopeptide repeat-containing protein At1g11... [more]
PPR10_ARATH3.877e-1948.35Pentatricopeptide repeat-containing protein At1g04... [more]
PP108_ARATH3.877e-1952.22Putative pentatricopeptide repeat-containing prote... [more]
PP428_ARATH5.064e-1944.86Pentatricopeptide repeat-containing protein At5g50... [more]
PP219_ARATH5.064e-1948.11Putative pentatricopeptide repeat-containing prote... [more]
PP172_ARATH6.614e-1944.86Pentatricopeptide repeat-containing protein At2g27... [more]
PP274_ARATH8.638e-1947.71Pentatricopeptide repeat-containing protein At3g49... [more]
PP272_ARATH8.638e-1951.19Pentatricopeptide repeat-containing protein At3g49... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS02_01L08_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01L08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832338 ID=CF832338; Name=CF832338; organism=Citrus sinensis; type=EST; length=834bp
TTTTTTTTTTTTTTTTTGAAATCAATCTACACAATTTTCATTTCACCTTT
AAGGTAAATTCTACTATATTTCACATGAAATATACATAAATAAAAAGAAT
AGCACTTTACCTACCTCGCACAACAATCTTGTTTAAATTATATTTTCCCT
TTTGGCAGCAAGAATACAGTGACGCTATATCCATTGGGTGCATACATAAA
AGTACTACACGATACCTTGATGTCAGTTCCATAATCAAAGGGTGTGCAGT
AAATTGAACAGCAAACCAGCTTCTTTCCTTTTCAAGACTGCTGGTTAAAG
CGAGCTGAATAACTGTTCATCAGTGTTTCAAGCTCTTGGAGTTGGGACTA
CGATGTTCTCTGCTTTGCCTGGAATCCTACAATTTAGTTCAAGGGGCCAG
CCACTGCCCAAGTGTACAAGTTTCACCACAACCCTGAAACTCTCATCCTG
TATTTTTGTACAAGTTATAGAATGCTTAAAAAAAATCTTTAGCTCTCTGA
CCTGTCTAGTCTTCCCCAGTAACCCTCATCACCACAAGAGCAGGTTCCAT
CCTTGAAGTGGTGAAAATGTTCAGTATCCCTAACAAAAATGTCTCTGCGT
ACAATCTTGGAGATGAACTTGACAGTGTTGTGACAACTTGGGCATGTATA
GAGATTCTTTGTAACCCAAATAGGCATCCCCGGGGCAGTATTTATGAGGC
CAAATGCCACAGCCAACATCTCACTGTGACCACAAAAGATCTCAGCTTTT
GAAGCTTCACTTTTGTCCATGGACACATATTCTGAACCAGCAAAACCAAC
TGCTTTCATTTTCTCATAAAATCCCTCCAAAACT
back to top