CF832338
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF832338 vs. ExPASy Swiss-Prot
Match: PPR45_ARATH (Pentatricopeptide repeat-containing protein At1g15510, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H73 PE=2 SV=1) HSP 1 Score: 159.458 bits (402), Expect = 2.186e-38 Identity = 76/103 (73.79%), Postives = 83/103 (80.58%), Query Frame = -2 Query: 528 VLEGFYEKMKAVGFAG-SEYVSMDKSEASKAEIFCGHSEMLAVAFGLINTAPGMPIWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHFKDGTCSCGD 833 VLEGFYEKM VG SE SMD++E S+ EIFCGHSE A+AFGLINT PGMPIWVTKNL C +CH+TVKFISK VRR+I VRD EHFHHFKDG CSCGD Sbjct: 764 VLEGFYEKMSEVGLTKISESSSMDETEISRDEIFCGHSERKAIAFGLINTVPGMPIWVTKNLSMCENCHDTVKFISKTVRREISVRDAEHFHHFKDGECSCGD 866
BLAST of CF832338 vs. ExPASy Swiss-Prot
Match: PP251_ARATH (Putative pentatricopeptide repeat-containing protein At3g23330 OS=Arabidopsis thaliana GN=PCMP-H32 PE=3 SV=1) HSP 1 Score: 109.768 bits (273), Expect = 1.987e-23 Identity = 56/106 (52.83%), Postives = 66/106 (62.26%), Query Frame = -2 Query: 516 LEGFYEKMKAVGF-AGSEYVSMDKSEASKAEIFCGHSEMLAVAFGLINTAPGMPIWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHFKDGTCSCGDEGYW 830 L+ E+M+ G+ A + V D E K E+ GHSE LAVAFG+INT PG I VTKN+ C CH +KFISKI R+I VRD FHHF G CSCGD YW Sbjct: 612 LKAVMEQMEKEGYVADTSGVLHDVDEEHKRELLFGHSERLAVAFGIINTEPGTTIRVTKNIRICTDCHVAIKFISKITEREIIVRDNSRFHHFNRGNCSCGD--YW 715
BLAST of CF832338 vs. ExPASy Swiss-Prot
Match: PP285_ARATH (Pentatricopeptide repeat-containing protein At3g57430, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H81 PE=2 SV=2) HSP 1 Score: 109.383 bits (272), Expect = 2.595e-23 Identity = 54/106 (50.94%), Postives = 67/106 (63.21%), Query Frame = -2 Query: 516 LEGFYEKMKAVGFAGSEYVSMDKSEASKAEIF-CGHSEMLAVAFGLINTAPGMPIWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHFKDGTCSCGDEGYW 830 LE +E+M+ G+ + E + EI CGHSE LA+AFG++NT+PG I V KNL C CH KFISKIV R+I +RD FH FK+GTCSCGD YW Sbjct: 787 LETLWERMRKEGYVPDTSCVLHNVEEDEKEILLCGHSEKLAIAFGILNTSPGTIIRVAKNLRVCNDCHLATKFISKIVDREIILRDVRRFHRFKNGTCSCGD--YW 890
BLAST of CF832338 vs. ExPASy Swiss-Prot
Match: PP224_ARATH (Pentatricopeptide repeat-containing protein At3g12770 OS=Arabidopsis thaliana GN=PCMP-H43 PE=2 SV=1) HSP 1 Score: 108.612 bits (270), Expect = 4.426e-23 Identity = 51/106 (48.11%), Postives = 68/106 (64.15%), Query Frame = -2 Query: 516 LEGFYEKMKAVGFAGSEYVSM-DKSEASKAEIFCGHSEMLAVAFGLINTAPGMPIWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHFKDGTCSCGDEGYW 830 +E ++K GF ++ S+ D ++ E C HSE +A+A+GLI+T G P+ +TKNL C +CH K ISK+V R+I VRDT FHHFKDG CSCGD YW Sbjct: 591 VEWIESRLKEGGFVANKDASLHDLNDEEAEETLCSHSERIAIAYGLISTPQGTPLRITKNLRACVNCHAATKLISKLVDREIVVRDTNRFHHFKDGVCSCGD--YW 694
BLAST of CF832338 vs. ExPASy Swiss-Prot
Match: PP210_ARATH (Pentatricopeptide repeat-containing protein At3g03580 OS=Arabidopsis thaliana GN=PCMP-H23 PE=2 SV=1) HSP 1 Score: 104.375 bits (259), Expect = 8.347e-22 Identity = 47/79 (59.49%), Postives = 53/79 (67.09%), Query Frame = -2 Query: 528 KSEASKAEIFCGHSEMLAVAFGLINTAPGMPIWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHFKDGTCSCGD 764 + E K + CGHSE LA+AFGL+NT PG P+ V KNL C CH K ISKIV R+I VRD FH FKDGTCSC D Sbjct: 802 EEEEEKRRLICGHSERLAIAFGLLNTEPGTPLQVMKNLRVCGDCHEVTKLISKIVGREILVRDANRFHLFKDGTCSCKD 880
BLAST of CF832338 vs. ExPASy Swiss-Prot
Match: PPR74_ARATH (Pentatricopeptide repeat-containing protein At1g47580, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H50 PE=2 SV=1) HSP 1 Score: 103.219 bits (256), Expect = 1.859e-21 Identity = 54/109 (49.54%), Postives = 68/109 (62.39%), Query Frame = -2 Query: 516 YEKMKAVGF----AG----SEYVSMDKSEASKAEIFCGHSEMLAVAFGLINTAPGMPIWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHFKDGTCSCGDEGYW 818 Y K+K++G AG ++YV D E +K + HSE LA+AFG+INT PG I V KNL C CHN +K +S I R+I VRD + FHHF+DG CSCGD YW Sbjct: 133 YVKLKSLGKEVRDAGYVPETKYVLHDIDEEAKEKALMHHSERLAIAFGIINTPPGTTIRVMKNLRICGDCHNFIKILSSIEDREIIVRDNKRFHHFRDGNCSCGD--YW 239
BLAST of CF832338 vs. ExPASy Swiss-Prot
Match: PP419_ARATH (Pentatricopeptide repeat-containing protein At5g46460, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H49 PE=2 SV=1) HSP 1 Score: 102.834 bits (255), Expect = 2.429e-21 Identity = 52/106 (49.06%), Postives = 66/106 (62.26%), Query Frame = -2 Query: 516 LEGFYEKMKAVGFAGSEYVSM-DKSEASKAEIFCGHSEMLAVAFGLINTAPGMPIWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHFKDGTCSCGDEGYW 830 LE EK+K +G+A ++ D + K E+ HSE LA+AFGLINT G + V KNL C CH +K IS +V R+I +RD FHHFK+GTCSCGD YW Sbjct: 594 LEFLREKLKELGYAPDYRSALHDVEDEQKEEMLWYHSERLAIAFGLINTVEGSAVTVMKNLRVCEDCHTVIKLISGVVGREIVLRDPIRFHHFKNGTCSCGD--YW 697
BLAST of CF832338 vs. ExPASy Swiss-Prot
Match: PPR53_ARATH (Pentatricopeptide repeat-containing protein At1g20230 OS=Arabidopsis thaliana GN=PCMP-H21 PE=2 SV=2) HSP 1 Score: 102.449 bits (254), Expect = 3.172e-21 Identity = 46/89 (51.69%), Postives = 57/89 (64.04%), Query Frame = -2 Query: 516 EYVSMDKSEASKAEIFCGHSEMLAVAFGLINTAPGMPIWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHFKDGTCSCGDEGYW 782 ++ D E + ++ GHSE LAV FGL+NT G P+ V KNL C CH +KFIS R+IF+RDT FHHFKDG CSCGD +W Sbjct: 674 DFALHDVEEQEQEQMLWGHSEKLAVVFGLLNTPDGTPLQVIKNLRICGDCHAVIKFISSYAGREIFIRDTNRFHHFKDGICSCGD--FW 760
BLAST of CF832338 vs. ExPASy Swiss-Prot
Match: PP316_ARATH (Pentatricopeptide repeat-containing protein At4g16835, mitochondrial OS=Arabidopsis thaliana GN=DYW10 PE=2 SV=2) HSP 1 Score: 101.293 bits (251), Expect = 7.066e-21 Identity = 52/106 (49.06%), Postives = 64/106 (60.38%), Query Frame = -2 Query: 516 LEGFYEKMKAVGFAGS-EYVSMDKSEASKAEIFCGHSEMLAVAFGLINTAPGMPIWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHFKDGTCSCGDEGYW 830 L+ +KMK G+ E+ + E K ++ HSE LAVAFG I G I V KNL C CH +KFIS+I +R+I VRDT FHHFKDG+CSCGD YW Sbjct: 558 LKELEKKMKLAGYKPELEFALHNVEEEQKEKLLLWHSEKLAVAFGCIKLPQGSQIQVFKNLRICGDCHKAIKFISEIEKREIIVRDTTRFHHFKDGSCSCGD--YW 661
BLAST of CF832338 vs. ExPASy Swiss-Prot
Match: PP258_ARATH (Pentatricopeptide repeat-containing protein At3g26782, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H34 PE=2 SV=1) HSP 1 Score: 101.293 bits (251), Expect = 7.066e-21 Identity = 50/100 (50.00%), Postives = 61/100 (61.00%), Query Frame = -2 Query: 516 KMKAVGF-AGSEYVSMDKSEASKAEIFCGHSEMLAVAFGLINTAPGMPIWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHFKDGTCSCGDEGYW 812 K+ G+ + + V D E K HSE LA+AFG++NT PG + V KNL C CHN +K ISKIV R+ VRD + FHHFKDG CSCGD YW Sbjct: 562 KLLEAGYVSNTSSVCHDVDEEEKEMTLRVHSEKLAIAFGIMNTVPGSTVNVVKNLRVCSDCHNVIKLISKIVDREFVVRDAKRFHHFKDGGCSCGD--YW 659 The following BLAST results are available for this feature:
BLAST of CF832338 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 83
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Sequences
The
following sequences are available for this feature:
EST sequence >CF832338 ID=CF832338; Name=CF832338; organism=Citrus sinensis; type=EST; length=834bpback to top |