CF832338
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF832338 vs. ExPASy Swiss-Prot
Match: PP354_ARATH (Pentatricopeptide repeat-containing protein At4g37380, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H48 PE=2 SV=1) HSP 1 Score: 97.0561 bits (240), Expect = 1.333e-19 Identity = 48/107 (44.86%), Postives = 63/107 (58.88%), Query Frame = -2 Query: 516 VLEGFYEKMKAVGFA-GSEYVSMDKSEASKAEIFCGHSEMLAVAFGLINTAPGMPIWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHFKDGTCSCGDEGYW 833 +L E++K+ G+ + V D E K + HSE LA+A+GLI+T PG P+ + KNL C CH K ISKI R I +RD FHHF DG+CSCGD +W Sbjct: 528 MLRKISERIKSHGYVPNTNTVLQDLEETEKEQSLQVHSERLAIAYGLISTKPGSPLKIFKNLRVCSDCHTVTKLISKITGRKIVMRDRNRFHHFTDGSCSCGD--FW 632
BLAST of CF832338 vs. ExPASy Swiss-Prot
Match: PP301_ARATH (Pentatricopeptide repeat-containing protein At4g02750 OS=Arabidopsis thaliana GN=PCMP-H24 PE=2 SV=1) HSP 1 Score: 96.6709 bits (239), Expect = 1.740e-19 Identity = 48/106 (45.28%), Postives = 63/106 (59.43%), Query Frame = -2 Query: 516 LEGFYEKMKAVGFAGSEYVSM-DKSEASKAEIFCGHSEMLAVAFGLINTAPGMPIWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHFKDGTCSCGDEGYW 830 LE +MK G+ V + D E K + HSE LAVA+G++ + G PI V KNL C CHN +K++++I R I +RD FHHFKDG+CSCGD YW Sbjct: 678 LEELDLRMKKAGYVSKTSVVLHDVEEEEKERMVRYHSERLAVAYGIMRVSSGRPIRVIKNLRVCEDCHNAIKYMARITGRLIILRDNNRFHHFKDGSCSCGD--YW 781
BLAST of CF832338 vs. ExPASy Swiss-Prot
Match: PPR32_ARATH (Pentatricopeptide repeat-containing protein At1g11290 OS=Arabidopsis thaliana GN=PCMP-H40 PE=2 SV=1) HSP 1 Score: 96.2857 bits (238), Expect = 2.273e-19 Identity = 47/106 (44.34%), Postives = 61/106 (57.55%), Query Frame = -2 Query: 516 FYEKM----KAVGFAGSEYVSMDKSEASKAEIFCGHSEMLAVAFGLINTAPGMPIWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHFKDGTCSCGDEGYW 821 F EK+ K G+ + + K ++ HSE LA++FGL+NT G I V KNL C CHN K+IS + R+I VRD + FHHFK+G CSCGD YW Sbjct: 706 FLEKLICHIKEAGYVPDTNLVLGVENDVKEQLLSTHSEKLAISFGLLNTTAGTTIHVRKNLRVCADCHNATKYISLVTGREIVVRDMQRFHHFKNGACSCGD--YW 809
BLAST of CF832338 vs. ExPASy Swiss-Prot
Match: PPR10_ARATH (Pentatricopeptide repeat-containing protein At1g04840 OS=Arabidopsis thaliana GN=PCMP-H64 PE=2 SV=1) HSP 1 Score: 95.5153 bits (236), Expect = 3.877e-19 Identity = 44/91 (48.35%), Postives = 57/91 (62.64%), Query Frame = -2 Query: 516 GSEYVSMDKSEASKAEIFCGHSEMLAVAFGLINTAPGMPIWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHFKDGTCSCGDEGYW 788 G+++ D E K + HSE LA+ G + TAPG I + KNL C CH+ +K++SKI +RDI +RD FHHFKDG CSCGD YW Sbjct: 577 GADWSIHDIEEEEKENVTGIHSEKLALTLGFLRTAPGTTIRIIKNLRICGDCHSLMKYVSKISQRDILLRDARQFHHFKDGRCSCGD--YW 665
BLAST of CF832338 vs. ExPASy Swiss-Prot
Match: PP108_ARATH (Putative pentatricopeptide repeat-containing protein At1g68930 OS=Arabidopsis thaliana GN=PCMP-H22 PE=3 SV=1) HSP 1 Score: 95.5153 bits (236), Expect = 3.877e-19 Identity = 47/90 (52.22%), Postives = 55/90 (61.11%), Query Frame = -2 Query: 516 SEYVSMDKSEASKAEIFCGHSEMLAVAFGLINTAPGMPIWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHFKDGTCSCGDEGYW 785 + +V D EA K ++ HSE LA+AFGLI G PI V KNL C CHN K IS + R+I VRD FH FKDGTCSCGD +W Sbjct: 656 TSFVHHDVEEAVKVKMLNYHSERLAIAFGLIFVPSGQPIRVGKNLRVCVDCHNATKHISSVTGREILVRDAVRFHRFKDGTCSCGD--FW 743
BLAST of CF832338 vs. ExPASy Swiss-Prot
Match: PP428_ARATH (Pentatricopeptide repeat-containing protein At5g50990 OS=Arabidopsis thaliana GN=PCMP-H59 PE=2 SV=2) HSP 1 Score: 95.1301 bits (235), Expect = 5.064e-19 Identity = 48/107 (44.86%), Postives = 66/107 (61.68%), Query Frame = -2 Query: 516 VLEGFYEKMKAVGFAG-SEYVSMDKSEASKAEIFCGHSEMLAVAFGLINTAPGMPIWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHFKDGTCSCGDEGYW 833 VLEG +K K+ GF ++ V MD SE K E HSE LA+A+ ++ ++PG I + KN+ C CHN +K +SK++ R I +RD FH F+DG CSC D YW Sbjct: 430 VLEGLIQKTKSQGFVSDTDLVLMDVSEEEKEENLNYHSEKLALAYVILKSSPGTEIRIQKNIRMCSDCHNWIKAVSKLLNRVIIMRDRIRFHRFEDGLCSCRD--YW 534
BLAST of CF832338 vs. ExPASy Swiss-Prot
Match: PP219_ARATH (Putative pentatricopeptide repeat-containing protein At3g08820 OS=Arabidopsis thaliana GN=PCMP-H84 PE=3 SV=1) HSP 1 Score: 95.1301 bits (235), Expect = 5.064e-19 Identity = 51/106 (48.11%), Postives = 62/106 (58.49%), Query Frame = -2 Query: 516 LEGFYEKMKAVGFAGS-EYVSMDKSEASKAEIFCGHSEMLAVAFGLINTAPGMPIWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHFKDGTCSCGDEGYW 830 LE +M+ +GF + E+V D E K + HSE LAVA GLI+T G I V KNL C CH +K ISKI RR+I VRD FH F +G+CSC D YW Sbjct: 582 LEDLGNEMRLMGFVPTTEFVFFDVEEEEKERVLGYHSEKLAVALGLISTDHGQVIRVVKNLRVCGDCHEVMKLISKITRREIVVRDNNRFHCFTNGSCSCND--YW 685
BLAST of CF832338 vs. ExPASy Swiss-Prot
Match: PP172_ARATH (Pentatricopeptide repeat-containing protein At2g27610 OS=Arabidopsis thaliana GN=PCMP-H60 PE=2 SV=1) HSP 1 Score: 94.7449 bits (234), Expect = 6.614e-19 Identity = 48/107 (44.86%), Postives = 63/107 (58.88%), Query Frame = -2 Query: 516 LEGFYEKMKAVGFA-GSEYVSMDKSEASKAEIFCGHSEMLAVAFGLINTAPGMPIWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHF-KDGTCSCGDEGYW 830 LE ++K +G+ + YV D + K + HSE LA+AFGLI T G P+ + KNL C CH +K I+KI R+I VRD+ FHHF DG CSCGD +W Sbjct: 764 LEDLSTRLKDLGYEPDTSYVLQDIDDEHKEAVLAQHSERLAIAFGLIATPKGSPLLIIKNLRVCGDCHLVIKLIAKIEEREIVVRDSNRFHHFSSDGVCSCGD--FW 868
BLAST of CF832338 vs. ExPASy Swiss-Prot
Match: PP274_ARATH (Pentatricopeptide repeat-containing protein At3g49710 OS=Arabidopsis thaliana GN=PCMP-H79 PE=2 SV=1) HSP 1 Score: 94.3597 bits (233), Expect = 8.638e-19 Identity = 52/109 (47.71%), Postives = 66/109 (60.55%), Query Frame = -2 Query: 516 LEGFYEKMKAVGFAGSEYVSM---DKSEASKAEIFCGH-SEMLAVAFGLINTAPGMPIWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHFKDGTCSCGDEGYW 830 LE +KMK VG+ + +M D++ E+ GH SE LAVAFGL++T G + V KNL C CHN +KF+S + R+I VRD FH FKDG CSCGD YW Sbjct: 615 LEEMMKKMKKVGYVMDKKWAMVKEDEAGEGDEEMRLGHHSEKLAVAFGLMSTRDGEELVVVKNLRICGDCHNAIKFMSAVAGREIIVRDNLRFHCFKDGKCSCGD--YW 721
BLAST of CF832338 vs. ExPASy Swiss-Prot
Match: PP272_ARATH (Pentatricopeptide repeat-containing protein At3g49170, chloroplastic OS=Arabidopsis thaliana GN=EMB2261 PE=2 SV=1) HSP 1 Score: 94.3597 bits (233), Expect = 8.638e-19 Identity = 43/84 (51.19%), Postives = 54/84 (64.29%), Query Frame = -2 Query: 516 DKSEASKAEIFCGHSEMLAVAFGLINTAPGMPIWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHFKDGTCSCGDEGYW 767 + EA K + HSE +AVAFGLI+T+ P+ V KNL C CHN +K+IS + R+I +RD FHHFKDG CSC D YW Sbjct: 769 ENDEAEKERLLYQHSEKIAVAFGLISTSKSRPVRVFKNLRVCGDCHNAMKYISTVSGREIVLRDLNRFHHFKDGKCSCND--YW 850 The following BLAST results are available for this feature:
BLAST of CF832338 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 83
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Sequences
The
following sequences are available for this feature:
EST sequence >CF832338 ID=CF832338; Name=CF832338; organism=Citrus sinensis; type=EST; length=834bpback to top |