CF832338

Overview
NameCF832338
Unique NameCF832338
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length834
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832338 vs. ExPASy Swiss-Prot
Match: PPR57_ARATH (Pentatricopeptide repeat-containing protein At1g25360 OS=Arabidopsis thaliana GN=PCMP-H74 PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.924e-18
Identity = 45/107 (42.06%), Postives = 70/107 (65.42%), Query Frame = -2
Query:  516 LEGFYEKMKAVGFA-GSEYVSMD-KSEASKAEIFCGHSEMLAVAFGLINTAPGMPIWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHFKDGTCSCGDEGYW 830
            L+   ++M+ +G+   + +V  D +S+  K ++   HSE +AVAFGL+   PG  I + KNL TC  CHN  +F+S +V+RDI +RD + FHHF++G CSCG+  +W
Sbjct:  686 LQDLGKEMRRLGYVPDTSFVLHDVESDGHKEDMLTTHSEKIAVAFGLMKLPPGTTIRIFKNLRTCGDCHNFFRFLSWVVQRDIILRDRKRFHHFRNGECSCGN--FW 790          
BLAST of CF832338 vs. ExPASy Swiss-Prot
Match: PP153_ARATH (Pentatricopeptide repeat-containing protein At2g15690 OS=Arabidopsis thaliana GN=PCMP-H66 PE=2 SV=2)

HSP 1 Score: 92.8189 bits (229), Expect = 2.513e-18
Identity = 42/90 (46.67%), Postives = 57/90 (63.33%), Query Frame = -2
Query:  516 SEYVSMDKSEASKAEIFCGHSEMLAVAFGLINTAPGMPIWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHFKDGTCSCGDEGYW 785
            + +V  D  + +K +    HSE LA+A+G+I T P   + + KNL  C  CHN +K +SKI+ R + VRD + FHHFKDG CSCGD  YW
Sbjct:  492 TRFVLHDIDQEAKEQALLYHSERLAIAYGIICTPPRKTLTIIKNLRVCGDCHNFIKIMSKIIGRVLIVRDNKRFHHFKDGKCSCGD--YW 579          
BLAST of CF832338 vs. ExPASy Swiss-Prot
Match: PPR21_ARATH (Pentatricopeptide repeat-containing protein At1g08070 OS=Arabidopsis thaliana GN=PCMP-H12 PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 3.282e-18
Identity = 47/107 (43.93%), Postives = 60/107 (56.07%), Query Frame = -2
Query:  516 VLEGFYEKMKAVGFA-GSEYVSMDKSEASKAEIFCGHSEMLAVAFGLINTAPGMPIWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHFKDGTCSCGDEGYW 833
            +LE     ++  GF   +  V  +  E  K      HSE LA+AFGLI+T PG  + + KNL  C +CH   K ISKI +R+I  RD   FHHF+DG CSC D  YW
Sbjct:  637 MLEEMEVLLEKAGFVPDTSEVLQEMEEEWKEGALRHHSEKLAIAFGLISTKPGTKLTIVKNLRVCRNCHEATKLISKIYKREIIARDRTRFHHFRDGVCSCND--YW 741          
BLAST of CF832338 vs. ExPASy Swiss-Prot
Match: PP252_ARATH (Pentatricopeptide repeat-containing protein At3g24000, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H87 PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 3.282e-18
Identity = 44/100 (44.00%), Postives = 60/100 (60.00%), Query Frame = -2
Query:  516 KMKAVGFA-GSEYVSMDKSEASKAEIFCGHSEMLAVAFGLINTAPGMPIWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHFKDGTCSCGDEGYW 812
            K+K +G+   + +V +   +  +      HSE +A+AF L+NT PG  I + KN+  C  CH  +K  SK+V R+I VRDT  FHHFKDG CSC D  YW
Sbjct:  536 KIKELGYVPDTSHVIVHVDQQEREVNLQYHSEKIALAFALLNTPPGSTIHIKKNIRVCGDCHTAIKLASKVVGREIIVRDTNRFHHFKDGNCSCKD--YW 633          
BLAST of CF832338 vs. ExPASy Swiss-Prot
Match: PP227_ARATH (Putative pentatricopeptide repeat-containing protein At3g13770, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H85 PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 3.282e-18
Identity = 47/100 (47.00%), Postives = 56/100 (56.00%), Query Frame = -2
Query:  516 KMKAVGFAGS-EYVSMDKSEASKAEIFCGHSEMLAVAFGLINTAPGMPIWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHFKDGTCSCGDEGYW 812
            KMK  G+      V  D  E  K ++  GHSE LA+ FGLI T  G+PI V KNL  C  CHN  K  SK+  R++ +RD   FH   DG CSCGD  YW
Sbjct:  531 KMKQAGYVPDLSCVLYDVDEEQKEKMLLGHSEKLALTFGLIATGEGIPIRVFKNLRICVDCHNFAKIFSKVFEREVSLRDKNRFHQIVDGICSCGD--YW 628          
BLAST of CF832338 vs. ExPASy Swiss-Prot
Match: PP411_ARATH (Pentatricopeptide repeat-containing protein At5g40410, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H15 PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 5.599e-18
Identity = 49/107 (45.79%), Postives = 67/107 (62.62%), Query Frame = -2
Query:  516 LEGFYEKMKA-VGFAG-SEYVSMDKSEASKAEIFCGHSEMLAVAFGLINTAPGMPIWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHFKDGTCSCGDEGYW 830
            L+   +KMK+ +G+   +E+V  D  E  K E+   HSE +A+AFGL+  +P  PI + KNL  C  CH T K IS I +R I +RD++ FHHF DG+CSC D  YW
Sbjct:  504 LKEIRKKMKSEMGYKSKTEFVLHDVGEDVKEEMINQHSEKIAMAFGLLVVSPMEPIIIRKNLRICGDCHETAKAISLIEKRRIIIRDSKRFHHFLDGSCSCSD--YW 608          
BLAST of CF832338 vs. ExPASy Swiss-Prot
Match: PP295_ARATH (Pentatricopeptide repeat-containing protein At3g62890 OS=Arabidopsis thaliana GN=PCMP-H82 PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 5.599e-18
Identity = 44/107 (41.12%), Postives = 65/107 (60.75%), Query Frame = -2
Query:  516 VLEGFYEKMKAVGFA-GSEYVSMDKSEASKAEIFCGHSEMLAVAFGLINTAPGMPIWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHFKDGTCSCGDEGYW 833
            +L+   ++++  G+   ++ V +D +E  K      HSE LA+AF L+ T PG P+ + KNL  C  CH  +K ISK+  R+I VRD   FHHF+DG+CSC D  +W
Sbjct:  469 MLDEIMQRLREAGYVTDTKEVLLDLNEKDKEIALSYHSEKLAIAFCLMKTRPGTPVRIIKNLRICGDCHLVMKMISKLFSREIVVRDCNRFHHFRDGSCSCRD--FW 573          
BLAST of CF832338 vs. ExPASy Swiss-Prot
Match: PP449_ARATH (Pentatricopeptide repeat-containing protein At5g66520 OS=Arabidopsis thaliana GN=PCMP-H61 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 7.312e-18
Identity = 41/71 (57.75%), Postives = 47/71 (66.20%), Query Frame = -2
Query:  516 HSEMLAVAFGLINTAPGMPIWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHFKDGTCSCGDEGYW 728
            HSE LA+ +GLI T PG  I + KNL  C  CH   K ISKI +RDI +RD   FHHF+DG CSCGD  YW
Sbjct:  552 HSEKLAITYGLIKTKPGTIIRIMKNLRVCKDCHKVTKLISKIYKRDIVMRDRTRFHHFRDGKCSCGD--YW 620          
BLAST of CF832338 vs. ExPASy Swiss-Prot
Match: PP267_ARATH (Pentatricopeptide repeat-containing protein At3g47530 OS=Arabidopsis thaliana GN=PCMP-H76 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 7.312e-18
Identity = 47/103 (45.63%), Postives = 62/103 (60.19%), Query Frame = -2
Query:  516 EKMKAVGFAG---SEYVSMDKSEASKAEIFCGHSEMLAVAFGLINTAPGMPIWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHFKDGTCSCGDEGYW 815
            +++K  G+     SE  +++ SE  K      HSE LA+AFG++ T PG  I VTKNL TC  CHN  KF+S +  R + VRD   FHHFK G+CSC D  +W
Sbjct:  492 QQLKIAGYVAEITSELHNLE-SEEEKGYALRYHSEKLAIAFGILVTPPGTTIRVTKNLRTCVDCHNFAKFVSDVYDRIVIVRDRSRFHHFKGGSCSCND--FW 591          
BLAST of CF832338 vs. ExPASy Swiss-Prot
Match: PP296_ARATH (Pentatricopeptide repeat-containing protein At3g63370 OS=Arabidopsis thaliana GN=PCMP-H83 PE=2 SV=2)

HSP 1 Score: 90.8929 bits (224), Expect = 9.550e-18
Identity = 41/94 (43.62%), Postives = 59/94 (62.77%), Query Frame = -2
Query:  528 KAVGF-AGSEYVSMDKSEASKAEIFCGHSEMLAVAFGLINTAPGMPIWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHFKDGTCSCGD 806
            + VG+ A +++V  +  E  K ++  GHSE +A+A+GL+ T     + +TKNL  C  CH   K +SK+ RRDI +RD   FHHF+ G CSCGD
Sbjct:  865 REVGYVADTKFVLHNVDEGEKVQMLHGHSERIAIAYGLLRTPDRACLRITKNLRVCRDCHTFCKLVSKLFRRDIVMRDANRFHHFESGLCSCGD 958          
The following BLAST results are available for this feature:
BLAST of CF832338 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
PPR57_ARATH1.924e-1842.06Pentatricopeptide repeat-containing protein At1g25... [more]
PP153_ARATH2.513e-1846.67Pentatricopeptide repeat-containing protein At2g15... [more]
PPR21_ARATH3.282e-1843.93Pentatricopeptide repeat-containing protein At1g08... [more]
PP252_ARATH3.282e-1844.00Pentatricopeptide repeat-containing protein At3g24... [more]
PP227_ARATH3.282e-1847.00Putative pentatricopeptide repeat-containing prote... [more]
PP411_ARATH5.599e-1845.79Pentatricopeptide repeat-containing protein At5g40... [more]
PP295_ARATH5.599e-1841.12Pentatricopeptide repeat-containing protein At3g62... [more]
PP449_ARATH7.312e-1857.75Pentatricopeptide repeat-containing protein At5g66... [more]
PP267_ARATH7.312e-1845.63Pentatricopeptide repeat-containing protein At3g47... [more]
PP296_ARATH9.550e-1843.62Pentatricopeptide repeat-containing protein At3g63... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01L08_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01L08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832338 ID=CF832338; Name=CF832338; organism=Citrus sinensis; type=EST; length=834bp
TTTTTTTTTTTTTTTTTGAAATCAATCTACACAATTTTCATTTCACCTTT
AAGGTAAATTCTACTATATTTCACATGAAATATACATAAATAAAAAGAAT
AGCACTTTACCTACCTCGCACAACAATCTTGTTTAAATTATATTTTCCCT
TTTGGCAGCAAGAATACAGTGACGCTATATCCATTGGGTGCATACATAAA
AGTACTACACGATACCTTGATGTCAGTTCCATAATCAAAGGGTGTGCAGT
AAATTGAACAGCAAACCAGCTTCTTTCCTTTTCAAGACTGCTGGTTAAAG
CGAGCTGAATAACTGTTCATCAGTGTTTCAAGCTCTTGGAGTTGGGACTA
CGATGTTCTCTGCTTTGCCTGGAATCCTACAATTTAGTTCAAGGGGCCAG
CCACTGCCCAAGTGTACAAGTTTCACCACAACCCTGAAACTCTCATCCTG
TATTTTTGTACAAGTTATAGAATGCTTAAAAAAAATCTTTAGCTCTCTGA
CCTGTCTAGTCTTCCCCAGTAACCCTCATCACCACAAGAGCAGGTTCCAT
CCTTGAAGTGGTGAAAATGTTCAGTATCCCTAACAAAAATGTCTCTGCGT
ACAATCTTGGAGATGAACTTGACAGTGTTGTGACAACTTGGGCATGTATA
GAGATTCTTTGTAACCCAAATAGGCATCCCCGGGGCAGTATTTATGAGGC
CAAATGCCACAGCCAACATCTCACTGTGACCACAAAAGATCTCAGCTTTT
GAAGCTTCACTTTTGTCCATGGACACATATTCTGAACCAGCAAAACCAAC
TGCTTTCATTTTCTCATAAAATCCCTCCAAAACT
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