CF832338
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF832338 vs. ExPASy Swiss-Prot
Match: PPR57_ARATH (Pentatricopeptide repeat-containing protein At1g25360 OS=Arabidopsis thaliana GN=PCMP-H74 PE=2 SV=1) HSP 1 Score: 93.2041 bits (230), Expect = 1.924e-18 Identity = 45/107 (42.06%), Postives = 70/107 (65.42%), Query Frame = -2 Query: 516 LEGFYEKMKAVGFA-GSEYVSMD-KSEASKAEIFCGHSEMLAVAFGLINTAPGMPIWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHFKDGTCSCGDEGYW 830 L+ ++M+ +G+ + +V D +S+ K ++ HSE +AVAFGL+ PG I + KNL TC CHN +F+S +V+RDI +RD + FHHF++G CSCG+ +W Sbjct: 686 LQDLGKEMRRLGYVPDTSFVLHDVESDGHKEDMLTTHSEKIAVAFGLMKLPPGTTIRIFKNLRTCGDCHNFFRFLSWVVQRDIILRDRKRFHHFRNGECSCGN--FW 790
BLAST of CF832338 vs. ExPASy Swiss-Prot
Match: PP153_ARATH (Pentatricopeptide repeat-containing protein At2g15690 OS=Arabidopsis thaliana GN=PCMP-H66 PE=2 SV=2) HSP 1 Score: 92.8189 bits (229), Expect = 2.513e-18 Identity = 42/90 (46.67%), Postives = 57/90 (63.33%), Query Frame = -2 Query: 516 SEYVSMDKSEASKAEIFCGHSEMLAVAFGLINTAPGMPIWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHFKDGTCSCGDEGYW 785 + +V D + +K + HSE LA+A+G+I T P + + KNL C CHN +K +SKI+ R + VRD + FHHFKDG CSCGD YW Sbjct: 492 TRFVLHDIDQEAKEQALLYHSERLAIAYGIICTPPRKTLTIIKNLRVCGDCHNFIKIMSKIIGRVLIVRDNKRFHHFKDGKCSCGD--YW 579
BLAST of CF832338 vs. ExPASy Swiss-Prot
Match: PPR21_ARATH (Pentatricopeptide repeat-containing protein At1g08070 OS=Arabidopsis thaliana GN=PCMP-H12 PE=2 SV=1) HSP 1 Score: 92.4337 bits (228), Expect = 3.282e-18 Identity = 47/107 (43.93%), Postives = 60/107 (56.07%), Query Frame = -2 Query: 516 VLEGFYEKMKAVGFA-GSEYVSMDKSEASKAEIFCGHSEMLAVAFGLINTAPGMPIWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHFKDGTCSCGDEGYW 833 +LE ++ GF + V + E K HSE LA+AFGLI+T PG + + KNL C +CH K ISKI +R+I RD FHHF+DG CSC D YW Sbjct: 637 MLEEMEVLLEKAGFVPDTSEVLQEMEEEWKEGALRHHSEKLAIAFGLISTKPGTKLTIVKNLRVCRNCHEATKLISKIYKREIIARDRTRFHHFRDGVCSCND--YW 741
BLAST of CF832338 vs. ExPASy Swiss-Prot
Match: PP252_ARATH (Pentatricopeptide repeat-containing protein At3g24000, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H87 PE=2 SV=1) HSP 1 Score: 92.4337 bits (228), Expect = 3.282e-18 Identity = 44/100 (44.00%), Postives = 60/100 (60.00%), Query Frame = -2 Query: 516 KMKAVGFA-GSEYVSMDKSEASKAEIFCGHSEMLAVAFGLINTAPGMPIWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHFKDGTCSCGDEGYW 812 K+K +G+ + +V + + + HSE +A+AF L+NT PG I + KN+ C CH +K SK+V R+I VRDT FHHFKDG CSC D YW Sbjct: 536 KIKELGYVPDTSHVIVHVDQQEREVNLQYHSEKIALAFALLNTPPGSTIHIKKNIRVCGDCHTAIKLASKVVGREIIVRDTNRFHHFKDGNCSCKD--YW 633
BLAST of CF832338 vs. ExPASy Swiss-Prot
Match: PP227_ARATH (Putative pentatricopeptide repeat-containing protein At3g13770, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H85 PE=3 SV=1) HSP 1 Score: 92.4337 bits (228), Expect = 3.282e-18 Identity = 47/100 (47.00%), Postives = 56/100 (56.00%), Query Frame = -2 Query: 516 KMKAVGFAGS-EYVSMDKSEASKAEIFCGHSEMLAVAFGLINTAPGMPIWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHFKDGTCSCGDEGYW 812 KMK G+ V D E K ++ GHSE LA+ FGLI T G+PI V KNL C CHN K SK+ R++ +RD FH DG CSCGD YW Sbjct: 531 KMKQAGYVPDLSCVLYDVDEEQKEKMLLGHSEKLALTFGLIATGEGIPIRVFKNLRICVDCHNFAKIFSKVFEREVSLRDKNRFHQIVDGICSCGD--YW 628
BLAST of CF832338 vs. ExPASy Swiss-Prot
Match: PP411_ARATH (Pentatricopeptide repeat-containing protein At5g40410, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H15 PE=2 SV=1) HSP 1 Score: 91.6633 bits (226), Expect = 5.599e-18 Identity = 49/107 (45.79%), Postives = 67/107 (62.62%), Query Frame = -2 Query: 516 LEGFYEKMKA-VGFAG-SEYVSMDKSEASKAEIFCGHSEMLAVAFGLINTAPGMPIWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHFKDGTCSCGDEGYW 830 L+ +KMK+ +G+ +E+V D E K E+ HSE +A+AFGL+ +P PI + KNL C CH T K IS I +R I +RD++ FHHF DG+CSC D YW Sbjct: 504 LKEIRKKMKSEMGYKSKTEFVLHDVGEDVKEEMINQHSEKIAMAFGLLVVSPMEPIIIRKNLRICGDCHETAKAISLIEKRRIIIRDSKRFHHFLDGSCSCSD--YW 608
BLAST of CF832338 vs. ExPASy Swiss-Prot
Match: PP295_ARATH (Pentatricopeptide repeat-containing protein At3g62890 OS=Arabidopsis thaliana GN=PCMP-H82 PE=2 SV=1) HSP 1 Score: 91.6633 bits (226), Expect = 5.599e-18 Identity = 44/107 (41.12%), Postives = 65/107 (60.75%), Query Frame = -2 Query: 516 VLEGFYEKMKAVGFA-GSEYVSMDKSEASKAEIFCGHSEMLAVAFGLINTAPGMPIWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHFKDGTCSCGDEGYW 833 +L+ ++++ G+ ++ V +D +E K HSE LA+AF L+ T PG P+ + KNL C CH +K ISK+ R+I VRD FHHF+DG+CSC D +W Sbjct: 469 MLDEIMQRLREAGYVTDTKEVLLDLNEKDKEIALSYHSEKLAIAFCLMKTRPGTPVRIIKNLRICGDCHLVMKMISKLFSREIVVRDCNRFHHFRDGSCSCRD--FW 573
BLAST of CF832338 vs. ExPASy Swiss-Prot
Match: PP449_ARATH (Pentatricopeptide repeat-containing protein At5g66520 OS=Arabidopsis thaliana GN=PCMP-H61 PE=2 SV=1) HSP 1 Score: 91.2781 bits (225), Expect = 7.312e-18 Identity = 41/71 (57.75%), Postives = 47/71 (66.20%), Query Frame = -2 Query: 516 HSEMLAVAFGLINTAPGMPIWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHFKDGTCSCGDEGYW 728 HSE LA+ +GLI T PG I + KNL C CH K ISKI +RDI +RD FHHF+DG CSCGD YW Sbjct: 552 HSEKLAITYGLIKTKPGTIIRIMKNLRVCKDCHKVTKLISKIYKRDIVMRDRTRFHHFRDGKCSCGD--YW 620
BLAST of CF832338 vs. ExPASy Swiss-Prot
Match: PP267_ARATH (Pentatricopeptide repeat-containing protein At3g47530 OS=Arabidopsis thaliana GN=PCMP-H76 PE=2 SV=1) HSP 1 Score: 91.2781 bits (225), Expect = 7.312e-18 Identity = 47/103 (45.63%), Postives = 62/103 (60.19%), Query Frame = -2 Query: 516 EKMKAVGFAG---SEYVSMDKSEASKAEIFCGHSEMLAVAFGLINTAPGMPIWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHFKDGTCSCGDEGYW 815 +++K G+ SE +++ SE K HSE LA+AFG++ T PG I VTKNL TC CHN KF+S + R + VRD FHHFK G+CSC D +W Sbjct: 492 QQLKIAGYVAEITSELHNLE-SEEEKGYALRYHSEKLAIAFGILVTPPGTTIRVTKNLRTCVDCHNFAKFVSDVYDRIVIVRDRSRFHHFKGGSCSCND--FW 591
BLAST of CF832338 vs. ExPASy Swiss-Prot
Match: PP296_ARATH (Pentatricopeptide repeat-containing protein At3g63370 OS=Arabidopsis thaliana GN=PCMP-H83 PE=2 SV=2) HSP 1 Score: 90.8929 bits (224), Expect = 9.550e-18 Identity = 41/94 (43.62%), Postives = 59/94 (62.77%), Query Frame = -2 Query: 528 KAVGF-AGSEYVSMDKSEASKAEIFCGHSEMLAVAFGLINTAPGMPIWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHFKDGTCSCGD 806 + VG+ A +++V + E K ++ GHSE +A+A+GL+ T + +TKNL C CH K +SK+ RRDI +RD FHHF+ G CSCGD Sbjct: 865 REVGYVADTKFVLHNVDEGEKVQMLHGHSERIAIAYGLLRTPDRACLRITKNLRVCRDCHTFCKLVSKLFRRDIVMRDANRFHHFESGLCSCGD 958 The following BLAST results are available for this feature:
BLAST of CF832338 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 83
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CF832338 ID=CF832338; Name=CF832338; organism=Citrus sinensis; type=EST; length=834bpback to top |