CF832338
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF832338 vs. ExPASy Swiss-Prot
Match: PP386_ARATH (Pentatricopeptide repeat-containing protein At5g15340, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H91 PE=2 SV=1) HSP 1 Score: 90.5077 bits (223), Expect = 1.247e-17 Identity = 43/103 (41.75%), Postives = 59/103 (57.28%), Query Frame = -2 Query: 516 EKMKAVGFAGSEYVSMDKSEAS---KAEIFCGHSEMLAVAFGLINTAPGMPIWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHFKDGTCSCGDEGYW 815 E++++ G+ + SE K + C HSE LAV FGL+ T P P+ V KNL C CH+ +K +SK+ R+I +RD FH FK G+CSC D YW Sbjct: 523 ERIRSAGYVPDVSGLVSHSEGDLEEKEQALCCHSEKLAVCFGLLETKPSTPLLVFKNLRICRDCHSAMKIVSKVYDREIIIRDRNRFHQFKGGSCSCSD--YW 623
BLAST of CF832338 vs. ExPASy Swiss-Prot
Match: PP312_ARATH (Pentatricopeptide repeat-containing protein At4g14850 OS=Arabidopsis thaliana GN=LOI1 PE=1 SV=1) HSP 1 Score: 90.5077 bits (223), Expect = 1.247e-17 Identity = 47/100 (47.00%), Postives = 61/100 (61.00%), Query Frame = -2 Query: 516 KMKAVGFAGSEYVSM-DKSEASKAEIFCGHSEMLAVAFGLINTAPGMPIWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHFKDGTCSCGDEGYW 812 +M+A G+ +S+ D E KA HSE LA+AFGL++ +PI +TKNL C CH+ KF+S V+R+I VRD FH FKDG CSC D YW Sbjct: 587 EMEAAGYKPDLKLSLYDLEEEEKAAEVSHHSEKLALAFGLLSLPLSVPIRITKNLRICGDCHSFFKFVSGSVKREIIVRDNNRFHRFKDGICSCKD--YW 684
BLAST of CF832338 vs. ExPASy Swiss-Prot
Match: PP145_ARATH (Pentatricopeptide repeat-containing protein At2g02980 OS=Arabidopsis thaliana GN=PCMP-H26 PE=2 SV=2) HSP 1 Score: 90.5077 bits (223), Expect = 1.247e-17 Identity = 46/107 (42.99%), Postives = 61/107 (57.01%), Query Frame = -2 Query: 516 LEGFYEKMKAVGFAG--SEYVSMDKSEASKAEIFCGHSEMLAVAFGLINTAPGMPIWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHFKDGTCSCGDEGYW 830 L+ +++K G+ S V + ++ K HSE LA+ FGL+NT PG I V KNL C CHN K IS I R + +RD + FHHF+DG CSCGD +W Sbjct: 499 LDEMVKELKLSGYVPDTSMVVHANMNDQEKEITLRYHSEKLAITFGLLNTPPGTTIRVVKNLRVCRDCHNAAKLISLIFGRKVVLRDVQRFHHFEDGKCSCGD--FW 603
BLAST of CF832338 vs. ExPASy Swiss-Prot
Match: PPR84_ARATH (Pentatricopeptide repeat-containing protein At1g56690, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H69 PE=2 SV=1) HSP 1 Score: 89.7373 bits (221), Expect = 2.128e-17 Identity = 42/88 (47.73%), Postives = 52/88 (59.09%), Query Frame = -2 Query: 516 YVSMDKSEASKAEIFCGHSEMLAVAFGLINTAPGMPIWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHFKDGTCSCGDEGYW 779 +V D E K + HSE LAVA+GL+ G+PI V KNL C CH +K ISK+ R+I +RD FHHF +G CSC D YW Sbjct: 619 HVLHDVDEEEKVDSLSRHSERLAVAYGLLKLPEGVPIRVMKNLRVCGDCHAAIKLISKVTEREIILRDANRFHHFNNGECSCRD--YW 704
BLAST of CF832338 vs. ExPASy Swiss-Prot
Match: PP406_ARATH (Pentatricopeptide repeat-containing protein At5g39680 OS=Arabidopsis thaliana GN=EMB2744 PE=2 SV=1) HSP 1 Score: 89.7373 bits (221), Expect = 2.128e-17 Identity = 45/100 (45.00%), Postives = 61/100 (61.00%), Query Frame = -2 Query: 516 KMKAVGFAGSEYVSM-DKSEASKAEIFCGHSEMLAVAFGLINTAPGMPIWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHFKDGTCSCGDEGYW 812 K+K +G++ + D E + + HSE LAVA+GLI T P++VTKN+ C CH+ +K ISKI +R I +RD+ FHHF DG CSC D YW Sbjct: 613 KIKPLGYSPDVAGAFHDVDEEQREDNLSYHSEKLAVAYGLIKTPEKSPLYVTKNVRICDDCHSAIKLISKISKRYIVIRDSNRFHHFLDGQCSCCD--YW 710
BLAST of CF832338 vs. ExPASy Swiss-Prot
Match: PP330_ARATH (Pentatricopeptide repeat-containing protein At4g21065 OS=Arabidopsis thaliana GN=PCMP-H28 PE=2 SV=2) HSP 1 Score: 89.7373 bits (221), Expect = 2.128e-17 Identity = 42/88 (47.73%), Postives = 56/88 (63.64%), Query Frame = -2 Query: 516 YVSMDKSEASKAEIFCGHSEMLAVAFGLINTAPGMPIWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHFKDGTCSCGDEGYW 779 YV +++ E A ++ HSE +A+AF LI+T PI V KNL C CH +K +SK+ R+I VRD FHHFK+G+CSC D YW Sbjct: 512 YVDVEEEEKENAVVY--HSEKIAIAFMLISTPERSPITVVKNLRVCADCHLAIKLVSKVYNREIVVRDRSRFHHFKNGSCSCQD--YW 595
BLAST of CF832338 vs. ExPASy Swiss-Prot
Match: PP429_ARATH (Putative pentatricopeptide repeat-containing protein At5g52630 OS=Arabidopsis thaliana GN=PCMP-H52 PE=3 SV=1) HSP 1 Score: 89.3521 bits (220), Expect = 2.779e-17 Identity = 47/101 (46.53%), Postives = 57/101 (56.44%), Query Frame = -2 Query: 516 EKMKAVGF-AGSEYVSMDKSEASKAEIFCGHSEMLAVAFGLINTAPGMPIWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHFKDGTCSCGDEGYW 815 E+M+ G+ A + YV + K + HSE LA+AFGLI PI V KNL C CHN +KF+S RR I VRD FH F+DG CSC D YW Sbjct: 490 EEMEKAGYIADTSYVLREVDGDEKNQTIRYHSERLAIAFGLITFPADRPIRVMKNLRVCGDCHNAIKFMSVCTRRVIIVRDNNRFHRFEDGKCSCND--YW 588
BLAST of CF832338 vs. ExPASy Swiss-Prot
Match: PP427_ARATH (Pentatricopeptide repeat-containing protein At5g50390, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H58 PE=2 SV=1) HSP 1 Score: 89.3521 bits (220), Expect = 2.779e-17 Identity = 42/101 (41.58%), Postives = 62/101 (61.39%), Query Frame = -2 Query: 516 EKMKAVGFAGSE-YVSMDKSEASKAEIFCGHSEMLAVAFGLINTAPGMPIWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHFKDGTCSCGDEGYW 815 E++ G++ E ++ D E + + HSE LA+A+GL+NT P+ +T+N C +CH V+FIS + R++ VRD FHHFK+G CSCG GYW Sbjct: 603 EEISEYGYSEEEQHLLPDVDEKEEERVGRYHSEKLAIAYGLVNTPEWNPLQITQNHRICKNCHKVVEFISLVTGREMVVRDASRFHHFKEGKCSCG--GYW 701
BLAST of CF832338 vs. ExPASy Swiss-Prot
Match: PP390_ARATH (Pentatricopeptide repeat-containing protein At5g16860 OS=Arabidopsis thaliana GN=PCMP-H92 PE=2 SV=1) HSP 1 Score: 89.3521 bits (220), Expect = 2.779e-17 Identity = 41/107 (38.32%), Postives = 65/107 (60.75%), Query Frame = -2 Query: 516 VLEGFYEKMKAVGFAGSEYVSM-DKSEASKAEIFCGHSEMLAVAFGLINTAPGMPIWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHFKDGTCSCGDEGYW 833 VL +++K +G+ ++ D + K ++ HSE LA+A+G++ T G I +TKNL C CH ++S+I+ DI +RD+ FHHFK+G+CSC +GYW Sbjct: 746 VLLDHMQRIKDIGYVPETGFALHDVDDEEKDDLLFEHSEKLALAYGILTTPQGAAIRITKNLRVCGDCHTAFTYMSRIIDHDIILRDSSRFHHFKNGSCSC--KGYW 850
BLAST of CF832338 vs. ExPASy Swiss-Prot
Match: PP353_ARATH (Pentatricopeptide repeat-containing protein At4g37170 OS=Arabidopsis thaliana GN=PCMP-H5 PE=2 SV=1) HSP 1 Score: 89.3521 bits (220), Expect = 2.779e-17 Identity = 47/101 (46.53%), Postives = 60/101 (59.41%), Query Frame = -2 Query: 516 EKMKAVGFA-GSEYVSMDKSEASKAEIFCGHSEMLAVAFGLINTAPGMPIWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHFKDGTCSCGDEGYW 815 +KMK G+ + V D + K E HSE LAVAF +++T G I V KNL +C CH +KFIS I +R I VRD+ FH F++G CSCGD YW Sbjct: 593 KKMKEEGYVPATSLVLHDVEDEQKEENLVYHSEKLAVAFAILSTEEGTAIKVFKNLRSCVDCHGAIKFISNITKRKITVRDSTRFHCFENGQCSCGD--YW 691 The following BLAST results are available for this feature:
BLAST of CF832338 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 83
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Sequences
The
following sequences are available for this feature:
EST sequence >CF832338 ID=CF832338; Name=CF832338; organism=Citrus sinensis; type=EST; length=834bpback to top |