CF832338

Overview
NameCF832338
Unique NameCF832338
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length834
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832338 vs. ExPASy Swiss-Prot
Match: PP386_ARATH (Pentatricopeptide repeat-containing protein At5g15340, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H91 PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.247e-17
Identity = 43/103 (41.75%), Postives = 59/103 (57.28%), Query Frame = -2
Query:  516 EKMKAVGFAGSEYVSMDKSEAS---KAEIFCGHSEMLAVAFGLINTAPGMPIWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHFKDGTCSCGDEGYW 815
            E++++ G+       +  SE     K +  C HSE LAV FGL+ T P  P+ V KNL  C  CH+ +K +SK+  R+I +RD   FH FK G+CSC D  YW
Sbjct:  523 ERIRSAGYVPDVSGLVSHSEGDLEEKEQALCCHSEKLAVCFGLLETKPSTPLLVFKNLRICRDCHSAMKIVSKVYDREIIIRDRNRFHQFKGGSCSCSD--YW 623          
BLAST of CF832338 vs. ExPASy Swiss-Prot
Match: PP312_ARATH (Pentatricopeptide repeat-containing protein At4g14850 OS=Arabidopsis thaliana GN=LOI1 PE=1 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.247e-17
Identity = 47/100 (47.00%), Postives = 61/100 (61.00%), Query Frame = -2
Query:  516 KMKAVGFAGSEYVSM-DKSEASKAEIFCGHSEMLAVAFGLINTAPGMPIWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHFKDGTCSCGDEGYW 812
            +M+A G+     +S+ D  E  KA     HSE LA+AFGL++    +PI +TKNL  C  CH+  KF+S  V+R+I VRD   FH FKDG CSC D  YW
Sbjct:  587 EMEAAGYKPDLKLSLYDLEEEEKAAEVSHHSEKLALAFGLLSLPLSVPIRITKNLRICGDCHSFFKFVSGSVKREIIVRDNNRFHRFKDGICSCKD--YW 684          
BLAST of CF832338 vs. ExPASy Swiss-Prot
Match: PP145_ARATH (Pentatricopeptide repeat-containing protein At2g02980 OS=Arabidopsis thaliana GN=PCMP-H26 PE=2 SV=2)

HSP 1 Score: 90.5077 bits (223), Expect = 1.247e-17
Identity = 46/107 (42.99%), Postives = 61/107 (57.01%), Query Frame = -2
Query:  516 LEGFYEKMKAVGFAG--SEYVSMDKSEASKAEIFCGHSEMLAVAFGLINTAPGMPIWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHFKDGTCSCGDEGYW 830
            L+   +++K  G+    S  V  + ++  K      HSE LA+ FGL+NT PG  I V KNL  C  CHN  K IS I  R + +RD + FHHF+DG CSCGD  +W
Sbjct:  499 LDEMVKELKLSGYVPDTSMVVHANMNDQEKEITLRYHSEKLAITFGLLNTPPGTTIRVVKNLRVCRDCHNAAKLISLIFGRKVVLRDVQRFHHFEDGKCSCGD--FW 603          
BLAST of CF832338 vs. ExPASy Swiss-Prot
Match: PPR84_ARATH (Pentatricopeptide repeat-containing protein At1g56690, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H69 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 2.128e-17
Identity = 42/88 (47.73%), Postives = 52/88 (59.09%), Query Frame = -2
Query:  516 YVSMDKSEASKAEIFCGHSEMLAVAFGLINTAPGMPIWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHFKDGTCSCGDEGYW 779
            +V  D  E  K +    HSE LAVA+GL+    G+PI V KNL  C  CH  +K ISK+  R+I +RD   FHHF +G CSC D  YW
Sbjct:  619 HVLHDVDEEEKVDSLSRHSERLAVAYGLLKLPEGVPIRVMKNLRVCGDCHAAIKLISKVTEREIILRDANRFHHFNNGECSCRD--YW 704          
BLAST of CF832338 vs. ExPASy Swiss-Prot
Match: PP406_ARATH (Pentatricopeptide repeat-containing protein At5g39680 OS=Arabidopsis thaliana GN=EMB2744 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 2.128e-17
Identity = 45/100 (45.00%), Postives = 61/100 (61.00%), Query Frame = -2
Query:  516 KMKAVGFAGSEYVSM-DKSEASKAEIFCGHSEMLAVAFGLINTAPGMPIWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHFKDGTCSCGDEGYW 812
            K+K +G++     +  D  E  + +    HSE LAVA+GLI T    P++VTKN+  C  CH+ +K ISKI +R I +RD+  FHHF DG CSC D  YW
Sbjct:  613 KIKPLGYSPDVAGAFHDVDEEQREDNLSYHSEKLAVAYGLIKTPEKSPLYVTKNVRICDDCHSAIKLISKISKRYIVIRDSNRFHHFLDGQCSCCD--YW 710          
BLAST of CF832338 vs. ExPASy Swiss-Prot
Match: PP330_ARATH (Pentatricopeptide repeat-containing protein At4g21065 OS=Arabidopsis thaliana GN=PCMP-H28 PE=2 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 2.128e-17
Identity = 42/88 (47.73%), Postives = 56/88 (63.64%), Query Frame = -2
Query:  516 YVSMDKSEASKAEIFCGHSEMLAVAFGLINTAPGMPIWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHFKDGTCSCGDEGYW 779
            YV +++ E   A ++  HSE +A+AF LI+T    PI V KNL  C  CH  +K +SK+  R+I VRD   FHHFK+G+CSC D  YW
Sbjct:  512 YVDVEEEEKENAVVY--HSEKIAIAFMLISTPERSPITVVKNLRVCADCHLAIKLVSKVYNREIVVRDRSRFHHFKNGSCSCQD--YW 595          
BLAST of CF832338 vs. ExPASy Swiss-Prot
Match: PP429_ARATH (Putative pentatricopeptide repeat-containing protein At5g52630 OS=Arabidopsis thaliana GN=PCMP-H52 PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.779e-17
Identity = 47/101 (46.53%), Postives = 57/101 (56.44%), Query Frame = -2
Query:  516 EKMKAVGF-AGSEYVSMDKSEASKAEIFCGHSEMLAVAFGLINTAPGMPIWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHFKDGTCSCGDEGYW 815
            E+M+  G+ A + YV  +     K +    HSE LA+AFGLI      PI V KNL  C  CHN +KF+S   RR I VRD   FH F+DG CSC D  YW
Sbjct:  490 EEMEKAGYIADTSYVLREVDGDEKNQTIRYHSERLAIAFGLITFPADRPIRVMKNLRVCGDCHNAIKFMSVCTRRVIIVRDNNRFHRFEDGKCSCND--YW 588          
BLAST of CF832338 vs. ExPASy Swiss-Prot
Match: PP427_ARATH (Pentatricopeptide repeat-containing protein At5g50390, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H58 PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.779e-17
Identity = 42/101 (41.58%), Postives = 62/101 (61.39%), Query Frame = -2
Query:  516 EKMKAVGFAGSE-YVSMDKSEASKAEIFCGHSEMLAVAFGLINTAPGMPIWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHFKDGTCSCGDEGYW 815
            E++   G++  E ++  D  E  +  +   HSE LA+A+GL+NT    P+ +T+N   C +CH  V+FIS +  R++ VRD   FHHFK+G CSCG  GYW
Sbjct:  603 EEISEYGYSEEEQHLLPDVDEKEEERVGRYHSEKLAIAYGLVNTPEWNPLQITQNHRICKNCHKVVEFISLVTGREMVVRDASRFHHFKEGKCSCG--GYW 701          
BLAST of CF832338 vs. ExPASy Swiss-Prot
Match: PP390_ARATH (Pentatricopeptide repeat-containing protein At5g16860 OS=Arabidopsis thaliana GN=PCMP-H92 PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.779e-17
Identity = 41/107 (38.32%), Postives = 65/107 (60.75%), Query Frame = -2
Query:  516 VLEGFYEKMKAVGFAGSEYVSM-DKSEASKAEIFCGHSEMLAVAFGLINTAPGMPIWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHFKDGTCSCGDEGYW 833
            VL    +++K +G+      ++ D  +  K ++   HSE LA+A+G++ T  G  I +TKNL  C  CH    ++S+I+  DI +RD+  FHHFK+G+CSC  +GYW
Sbjct:  746 VLLDHMQRIKDIGYVPETGFALHDVDDEEKDDLLFEHSEKLALAYGILTTPQGAAIRITKNLRVCGDCHTAFTYMSRIIDHDIILRDSSRFHHFKNGSCSC--KGYW 850          
BLAST of CF832338 vs. ExPASy Swiss-Prot
Match: PP353_ARATH (Pentatricopeptide repeat-containing protein At4g37170 OS=Arabidopsis thaliana GN=PCMP-H5 PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.779e-17
Identity = 47/101 (46.53%), Postives = 60/101 (59.41%), Query Frame = -2
Query:  516 EKMKAVGFA-GSEYVSMDKSEASKAEIFCGHSEMLAVAFGLINTAPGMPIWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHFKDGTCSCGDEGYW 815
            +KMK  G+   +  V  D  +  K E    HSE LAVAF +++T  G  I V KNL +C  CH  +KFIS I +R I VRD+  FH F++G CSCGD  YW
Sbjct:  593 KKMKEEGYVPATSLVLHDVEDEQKEENLVYHSEKLAVAFAILSTEEGTAIKVFKNLRSCVDCHGAIKFISNITKRKITVRDSTRFHCFENGQCSCGD--YW 691          
The following BLAST results are available for this feature:
BLAST of CF832338 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
PP386_ARATH1.247e-1741.75Pentatricopeptide repeat-containing protein At5g15... [more]
PP312_ARATH1.247e-1747.00Pentatricopeptide repeat-containing protein At4g14... [more]
PP145_ARATH1.247e-1742.99Pentatricopeptide repeat-containing protein At2g02... [more]
PPR84_ARATH2.128e-1747.73Pentatricopeptide repeat-containing protein At1g56... [more]
PP406_ARATH2.128e-1745.00Pentatricopeptide repeat-containing protein At5g39... [more]
PP330_ARATH2.128e-1747.73Pentatricopeptide repeat-containing protein At4g21... [more]
PP429_ARATH2.779e-1746.53Putative pentatricopeptide repeat-containing prote... [more]
PP427_ARATH2.779e-1741.58Pentatricopeptide repeat-containing protein At5g50... [more]
PP390_ARATH2.779e-1738.32Pentatricopeptide repeat-containing protein At5g16... [more]
PP353_ARATH2.779e-1746.53Pentatricopeptide repeat-containing protein At4g37... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01L08_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01L08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832338 ID=CF832338; Name=CF832338; organism=Citrus sinensis; type=EST; length=834bp
TTTTTTTTTTTTTTTTTGAAATCAATCTACACAATTTTCATTTCACCTTT
AAGGTAAATTCTACTATATTTCACATGAAATATACATAAATAAAAAGAAT
AGCACTTTACCTACCTCGCACAACAATCTTGTTTAAATTATATTTTCCCT
TTTGGCAGCAAGAATACAGTGACGCTATATCCATTGGGTGCATACATAAA
AGTACTACACGATACCTTGATGTCAGTTCCATAATCAAAGGGTGTGCAGT
AAATTGAACAGCAAACCAGCTTCTTTCCTTTTCAAGACTGCTGGTTAAAG
CGAGCTGAATAACTGTTCATCAGTGTTTCAAGCTCTTGGAGTTGGGACTA
CGATGTTCTCTGCTTTGCCTGGAATCCTACAATTTAGTTCAAGGGGCCAG
CCACTGCCCAAGTGTACAAGTTTCACCACAACCCTGAAACTCTCATCCTG
TATTTTTGTACAAGTTATAGAATGCTTAAAAAAAATCTTTAGCTCTCTGA
CCTGTCTAGTCTTCCCCAGTAACCCTCATCACCACAAGAGCAGGTTCCAT
CCTTGAAGTGGTGAAAATGTTCAGTATCCCTAACAAAAATGTCTCTGCGT
ACAATCTTGGAGATGAACTTGACAGTGTTGTGACAACTTGGGCATGTATA
GAGATTCTTTGTAACCCAAATAGGCATCCCCGGGGCAGTATTTATGAGGC
CAAATGCCACAGCCAACATCTCACTGTGACCACAAAAGATCTCAGCTTTT
GAAGCTTCACTTTTGTCCATGGACACATATTCTGAACCAGCAAAACCAAC
TGCTTTCATTTTCTCATAAAATCCCTCCAAAACT
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