CF832338

Overview
NameCF832338
Unique NameCF832338
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length834
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832338 vs. ExPASy Swiss-Prot
Match: PP410_ARATH (Putative pentatricopeptide repeat-containing protein At5g40405 OS=Arabidopsis thaliana GN=PCMP-H14 PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.629e-17
Identity = 43/100 (43.00%), Postives = 57/100 (57.00%), Query Frame = -2
Query:  516 KMKAVGF-AGSEYVSMDKSEASKAEIFCGHSEMLAVAFGLINTAPGMPIWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHFKDGTCSCGDEGYW 812
            +++  G+ A +  V  D  E  K +  C HSE  A+AFG+++    +PI + KNL  C  CH     ISKI  R+I VRD   FHHFKDG CSC   G+W
Sbjct:  515 RLRLAGYKADTTPVMFDIDEEEKEDALCLHSEKAAIAFGIMSLKEDVPIRIVKNLRVCGDCHQVSMMISKIFNREIIVRDRNRFHHFKDGHCSC--NGFW 612          
BLAST of CF832338 vs. ExPASy Swiss-Prot
Match: PP308_ARATH (Pentatricopeptide repeat-containing protein At4g14050, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H13 PE=2 SV=3)

HSP 1 Score: 88.5817 bits (218), Expect = 4.740e-17
Identity = 40/90 (44.44%), Postives = 53/90 (58.89%), Query Frame = -2
Query:  516 SEYVSMDKSEASKAEIFCGHSEMLAVAFGLINTAPGMPIWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHFKDGTCSCGDEGYW 785
            + ++  D  E  K ++   HSE  AVA+GL+   PG PI + KNL  C  CH  +K IS+I  R+I VRD   +HHFK G CSC D  +W
Sbjct:  525 TSWILHDMDEQEKEKLLFWHSERSAVAYGLLKAVPGTPIRIVKNLRVCGDCHVVLKHISEITEREIIVRDATRYHHFKGGKCSCND--FW 612          
BLAST of CF832338 vs. ExPASy Swiss-Prot
Match: PPR85_ARATH (Pentatricopeptide repeat-containing protein At1g59720, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H51 PE=2 SV=2)

HSP 1 Score: 88.1965 bits (217), Expect = 6.190e-17
Identity = 41/71 (57.75%), Postives = 46/71 (64.79%), Query Frame = -2
Query:  516 HSEMLAVAFGLINTAPGMPIWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHFKDGTCSCGDEGYW 728
            HSE LA+AFGLIN  P  PI + KNL  C  CH   K ISK+   +I VRD   FHHFKDG+CSC D  YW
Sbjct:  570 HSERLAIAFGLINLPPQTPIRIFKNLRVCNDCHEVTKLISKVFNTEIIVRDRVRFHHFKDGSCSCLD--YW 638          
BLAST of CF832338 vs. ExPASy Swiss-Prot
Match: PPR25_ARATH (Pentatricopeptide repeat-containing protein At1g09410 OS=Arabidopsis thaliana GN=PCMP-H18 PE=2 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 8.084e-17
Identity = 41/88 (46.59%), Postives = 51/88 (57.95%), Query Frame = -2
Query:  516 YVSMDKSEASKAEIFCGHSEMLAVAFGLINTAPGMPIWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHFKDGTCSCGDEGYW 779
            Y   D  E  K      HSE LAVA+ L+  + G+PI V KNL  C  CH  +K ISK+  R+I +RD   FHHF++G CSC D  YW
Sbjct:  620 YALHDVDEEEKVNSLKYHSERLAVAYALLKLSEGIPIRVMKNLRVCSDCHTAIKIISKVKEREIILRDANRFHHFRNGECSCKD--YW 705          
BLAST of CF832338 vs. ExPASy Swiss-Prot
Match: PP367_ARATH (Pentatricopeptide repeat-containing protein At5g06540 OS=Arabidopsis thaliana GN=PCMP-H88 PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 8.084e-17
Identity = 41/100 (41.00%), Postives = 58/100 (58.00%), Query Frame = -2
Query:  516 KMKAVGFAGSEYVSM-DKSEASKAEIFCGHSEMLAVAFGLINTAPGMPIWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHFKDGTCSCGDEGYW 812
            K++ +G+ G+   +  D  E  K      HSE LA+A+G++ T PG  I + KNL  C  CH   K IS++  R++ VRD   FHHF++G CSC D  YW
Sbjct:  525 KIRLIGYKGNTGDAFFDVDEEEKESSIHMHSEKLAIAYGMMKTKPGTTIRIVKNLRVCEDCHTVTKLISEVYGRELIVRDRNRFHHFRNGVCSCRD--YW 622          
BLAST of CF832338 vs. ExPASy Swiss-Prot
Match: PP446_ARATH (Pentatricopeptide repeat-containing protein At5g65570 OS=Arabidopsis thaliana GN=PCMP-H47 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.352e-16
Identity = 43/106 (40.57%), Postives = 63/106 (59.43%), Query Frame = -2
Query:  516 LEGFYEKMKAVGFAGSEY-VSMDKSEASKAEIFCGHSEMLAVAFGLINTAPGMPIWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHFKDGTCSCGDEGYW 830
            LE   +K K +G+   +  V  D  E +K      HSE LA+AF +     G  I + KNL  C  CH+ +K +S++++R+I  RD++ FHHF+DG+CSCGD  YW
Sbjct:  636 LEELIKKSKDLGYVEDKSCVFQDMEETAKERSLHQHSEKLAIAFAVWRNVGGS-IRILKNLRVCVDCHSWIKIVSRVMKREIICRDSKRFHHFRDGSCSCGD--YW 738          
BLAST of CF832338 vs. ExPASy Swiss-Prot
Match: PP223_ARATH (Putative pentatricopeptide repeat-containing protein At3g11460 OS=Arabidopsis thaliana GN=PCMP-H52 PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.352e-16
Identity = 40/71 (56.34%), Postives = 47/71 (66.20%), Query Frame = -2
Query:  516 HSEMLAVAFGLINTAPGMPIWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHFKDGTCSCGDEGYW 728
            HSE LA+AFG++N+ PG  I V KNL  C  CH  +K +SKIV R   VRD   FH+FKDG CSC D  YW
Sbjct:  555 HSERLAIAFGILNSIPGTEILVIKNLRVCEDCHVFLKQVSKIVDRQFVVRDASRFHYFKDGVCSCKD--YW 623          
BLAST of CF832338 vs. ExPASy Swiss-Prot
Match: PP284_ARATH (Pentatricopeptide repeat-containing protein At3g56550 OS=Arabidopsis thaliana GN=PCMP-H80 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 6.844e-16
Identity = 37/71 (52.11%), Postives = 46/71 (64.79%), Query Frame = -2
Query:  516 HSEMLAVAFGLINTAPGMPIWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHFKDGTCSCGDEGYW 728
            HSE LA+A+GL+ T  G  + +TKNL  C  CH+  K++SK   R+I VRD   FHHF DG CSC D  YW
Sbjct:  513 HSEKLAIAYGLMRTTAGTTLRITKNLRVCRDCHSFTKYVSKAFNREIIVRDRVRFHHFADGICSCND--YW 581          
BLAST of CF832338 vs. ExPASy Swiss-Prot
Match: PP140_ARATH (Pentatricopeptide repeat-containing protein At2g01510, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H37 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 8.938e-16
Identity = 41/87 (47.13%), Postives = 53/87 (60.92%), Query Frame = -2
Query:  516 VSMDKSEASKAEIFCGHSEMLAVAFGLINTAPGMPIWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHFKDGTCSCGDEGYW 776
            V M++ E S +     HSE LA+AFGLI   PG PI V KNL TC  CH   KF+S +   +I +RD   FHHF++G CSC +  +W
Sbjct:  504 VEMEEKECSLSH----HSEKLAIAFGLIKGRPGHPIRVMKNLRTCDDCHAFSKFVSSLTSTEIIMRDKNRFHHFRNGVCSCKE--FW 584          
BLAST of CF832338 vs. ExPASy Swiss-Prot
Match: PP378_ARATH (Pentatricopeptide repeat-containing protein At5g13270, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H90 PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.167e-15
Identity = 47/105 (44.76%), Postives = 60/105 (57.14%), Query Frame = -2
Query:  516 YEKMKAV-GFAGSEYVSMDKSEASKAEIFCGHSEMLAVAFGLINT---APGMPIWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHFKDGTCSCGDEGYW 818
            YEK+K   GF   +    + +E  + E    HSE LA+AFGLI+    AP  PI V KNL  CP CH   K +S +   +I +RD+  FHHFK+G CSC D  YW
Sbjct:  653 YEKLKEFDGFMEGDMFQCNMTE--RREQLLDHSERLAIAFGLISVHGNAPA-PIKVFKNLRACPDCHEFAKHVSLVTGHEIVIRDSRRFHHFKEGKCSCND--YW 752          
The following BLAST results are available for this feature:
BLAST of CF832338 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
PP410_ARATH3.629e-1743.00Putative pentatricopeptide repeat-containing prote... [more]
PP308_ARATH4.740e-1744.44Pentatricopeptide repeat-containing protein At4g14... [more]
PPR85_ARATH6.190e-1757.75Pentatricopeptide repeat-containing protein At1g59... [more]
PPR25_ARATH8.084e-1746.59Pentatricopeptide repeat-containing protein At1g09... [more]
PP367_ARATH8.084e-1741.00Pentatricopeptide repeat-containing protein At5g06... [more]
PP446_ARATH2.352e-1640.57Pentatricopeptide repeat-containing protein At5g65... [more]
PP223_ARATH2.352e-1656.34Putative pentatricopeptide repeat-containing prote... [more]
PP284_ARATH6.844e-1652.11Pentatricopeptide repeat-containing protein At3g56... [more]
PP140_ARATH8.938e-1647.13Pentatricopeptide repeat-containing protein At2g01... [more]
PP378_ARATH1.167e-1544.76Pentatricopeptide repeat-containing protein At5g13... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS02_01L08_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01L08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832338 ID=CF832338; Name=CF832338; organism=Citrus sinensis; type=EST; length=834bp
TTTTTTTTTTTTTTTTTGAAATCAATCTACACAATTTTCATTTCACCTTT
AAGGTAAATTCTACTATATTTCACATGAAATATACATAAATAAAAAGAAT
AGCACTTTACCTACCTCGCACAACAATCTTGTTTAAATTATATTTTCCCT
TTTGGCAGCAAGAATACAGTGACGCTATATCCATTGGGTGCATACATAAA
AGTACTACACGATACCTTGATGTCAGTTCCATAATCAAAGGGTGTGCAGT
AAATTGAACAGCAAACCAGCTTCTTTCCTTTTCAAGACTGCTGGTTAAAG
CGAGCTGAATAACTGTTCATCAGTGTTTCAAGCTCTTGGAGTTGGGACTA
CGATGTTCTCTGCTTTGCCTGGAATCCTACAATTTAGTTCAAGGGGCCAG
CCACTGCCCAAGTGTACAAGTTTCACCACAACCCTGAAACTCTCATCCTG
TATTTTTGTACAAGTTATAGAATGCTTAAAAAAAATCTTTAGCTCTCTGA
CCTGTCTAGTCTTCCCCAGTAACCCTCATCACCACAAGAGCAGGTTCCAT
CCTTGAAGTGGTGAAAATGTTCAGTATCCCTAACAAAAATGTCTCTGCGT
ACAATCTTGGAGATGAACTTGACAGTGTTGTGACAACTTGGGCATGTATA
GAGATTCTTTGTAACCCAAATAGGCATCCCCGGGGCAGTATTTATGAGGC
CAAATGCCACAGCCAACATCTCACTGTGACCACAAAAGATCTCAGCTTTT
GAAGCTTCACTTTTGTCCATGGACACATATTCTGAACCAGCAAAACCAAC
TGCTTTCATTTTCTCATAAAATCCCTCCAAAACT
back to top