CF832338
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF832338 vs. ExPASy Swiss-Prot
Match: PP410_ARATH (Putative pentatricopeptide repeat-containing protein At5g40405 OS=Arabidopsis thaliana GN=PCMP-H14 PE=3 SV=1) HSP 1 Score: 88.9669 bits (219), Expect = 3.629e-17 Identity = 43/100 (43.00%), Postives = 57/100 (57.00%), Query Frame = -2 Query: 516 KMKAVGF-AGSEYVSMDKSEASKAEIFCGHSEMLAVAFGLINTAPGMPIWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHFKDGTCSCGDEGYW 812 +++ G+ A + V D E K + C HSE A+AFG+++ +PI + KNL C CH ISKI R+I VRD FHHFKDG CSC G+W Sbjct: 515 RLRLAGYKADTTPVMFDIDEEEKEDALCLHSEKAAIAFGIMSLKEDVPIRIVKNLRVCGDCHQVSMMISKIFNREIIVRDRNRFHHFKDGHCSC--NGFW 612
BLAST of CF832338 vs. ExPASy Swiss-Prot
Match: PP308_ARATH (Pentatricopeptide repeat-containing protein At4g14050, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H13 PE=2 SV=3) HSP 1 Score: 88.5817 bits (218), Expect = 4.740e-17 Identity = 40/90 (44.44%), Postives = 53/90 (58.89%), Query Frame = -2 Query: 516 SEYVSMDKSEASKAEIFCGHSEMLAVAFGLINTAPGMPIWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHFKDGTCSCGDEGYW 785 + ++ D E K ++ HSE AVA+GL+ PG PI + KNL C CH +K IS+I R+I VRD +HHFK G CSC D +W Sbjct: 525 TSWILHDMDEQEKEKLLFWHSERSAVAYGLLKAVPGTPIRIVKNLRVCGDCHVVLKHISEITEREIIVRDATRYHHFKGGKCSCND--FW 612
BLAST of CF832338 vs. ExPASy Swiss-Prot
Match: PPR85_ARATH (Pentatricopeptide repeat-containing protein At1g59720, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H51 PE=2 SV=2) HSP 1 Score: 88.1965 bits (217), Expect = 6.190e-17 Identity = 41/71 (57.75%), Postives = 46/71 (64.79%), Query Frame = -2 Query: 516 HSEMLAVAFGLINTAPGMPIWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHFKDGTCSCGDEGYW 728 HSE LA+AFGLIN P PI + KNL C CH K ISK+ +I VRD FHHFKDG+CSC D YW Sbjct: 570 HSERLAIAFGLINLPPQTPIRIFKNLRVCNDCHEVTKLISKVFNTEIIVRDRVRFHHFKDGSCSCLD--YW 638
BLAST of CF832338 vs. ExPASy Swiss-Prot
Match: PPR25_ARATH (Pentatricopeptide repeat-containing protein At1g09410 OS=Arabidopsis thaliana GN=PCMP-H18 PE=2 SV=2) HSP 1 Score: 87.8113 bits (216), Expect = 8.084e-17 Identity = 41/88 (46.59%), Postives = 51/88 (57.95%), Query Frame = -2 Query: 516 YVSMDKSEASKAEIFCGHSEMLAVAFGLINTAPGMPIWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHFKDGTCSCGDEGYW 779 Y D E K HSE LAVA+ L+ + G+PI V KNL C CH +K ISK+ R+I +RD FHHF++G CSC D YW Sbjct: 620 YALHDVDEEEKVNSLKYHSERLAVAYALLKLSEGIPIRVMKNLRVCSDCHTAIKIISKVKEREIILRDANRFHHFRNGECSCKD--YW 705
BLAST of CF832338 vs. ExPASy Swiss-Prot
Match: PP367_ARATH (Pentatricopeptide repeat-containing protein At5g06540 OS=Arabidopsis thaliana GN=PCMP-H88 PE=2 SV=1) HSP 1 Score: 87.8113 bits (216), Expect = 8.084e-17 Identity = 41/100 (41.00%), Postives = 58/100 (58.00%), Query Frame = -2 Query: 516 KMKAVGFAGSEYVSM-DKSEASKAEIFCGHSEMLAVAFGLINTAPGMPIWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHFKDGTCSCGDEGYW 812 K++ +G+ G+ + D E K HSE LA+A+G++ T PG I + KNL C CH K IS++ R++ VRD FHHF++G CSC D YW Sbjct: 525 KIRLIGYKGNTGDAFFDVDEEEKESSIHMHSEKLAIAYGMMKTKPGTTIRIVKNLRVCEDCHTVTKLISEVYGRELIVRDRNRFHHFRNGVCSCRD--YW 622
BLAST of CF832338 vs. ExPASy Swiss-Prot
Match: PP446_ARATH (Pentatricopeptide repeat-containing protein At5g65570 OS=Arabidopsis thaliana GN=PCMP-H47 PE=2 SV=1) HSP 1 Score: 86.2705 bits (212), Expect = 2.352e-16 Identity = 43/106 (40.57%), Postives = 63/106 (59.43%), Query Frame = -2 Query: 516 LEGFYEKMKAVGFAGSEY-VSMDKSEASKAEIFCGHSEMLAVAFGLINTAPGMPIWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHFKDGTCSCGDEGYW 830 LE +K K +G+ + V D E +K HSE LA+AF + G I + KNL C CH+ +K +S++++R+I RD++ FHHF+DG+CSCGD YW Sbjct: 636 LEELIKKSKDLGYVEDKSCVFQDMEETAKERSLHQHSEKLAIAFAVWRNVGGS-IRILKNLRVCVDCHSWIKIVSRVMKREIICRDSKRFHHFRDGSCSCGD--YW 738
BLAST of CF832338 vs. ExPASy Swiss-Prot
Match: PP223_ARATH (Putative pentatricopeptide repeat-containing protein At3g11460 OS=Arabidopsis thaliana GN=PCMP-H52 PE=3 SV=1) HSP 1 Score: 86.2705 bits (212), Expect = 2.352e-16 Identity = 40/71 (56.34%), Postives = 47/71 (66.20%), Query Frame = -2 Query: 516 HSEMLAVAFGLINTAPGMPIWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHFKDGTCSCGDEGYW 728 HSE LA+AFG++N+ PG I V KNL C CH +K +SKIV R VRD FH+FKDG CSC D YW Sbjct: 555 HSERLAIAFGILNSIPGTEILVIKNLRVCEDCHVFLKQVSKIVDRQFVVRDASRFHYFKDGVCSCKD--YW 623
BLAST of CF832338 vs. ExPASy Swiss-Prot
Match: PP284_ARATH (Pentatricopeptide repeat-containing protein At3g56550 OS=Arabidopsis thaliana GN=PCMP-H80 PE=2 SV=1) HSP 1 Score: 84.7297 bits (208), Expect = 6.844e-16 Identity = 37/71 (52.11%), Postives = 46/71 (64.79%), Query Frame = -2 Query: 516 HSEMLAVAFGLINTAPGMPIWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHFKDGTCSCGDEGYW 728 HSE LA+A+GL+ T G + +TKNL C CH+ K++SK R+I VRD FHHF DG CSC D YW Sbjct: 513 HSEKLAIAYGLMRTTAGTTLRITKNLRVCRDCHSFTKYVSKAFNREIIVRDRVRFHHFADGICSCND--YW 581
BLAST of CF832338 vs. ExPASy Swiss-Prot
Match: PP140_ARATH (Pentatricopeptide repeat-containing protein At2g01510, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H37 PE=2 SV=1) HSP 1 Score: 84.3445 bits (207), Expect = 8.938e-16 Identity = 41/87 (47.13%), Postives = 53/87 (60.92%), Query Frame = -2 Query: 516 VSMDKSEASKAEIFCGHSEMLAVAFGLINTAPGMPIWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHFKDGTCSCGDEGYW 776 V M++ E S + HSE LA+AFGLI PG PI V KNL TC CH KF+S + +I +RD FHHF++G CSC + +W Sbjct: 504 VEMEEKECSLSH----HSEKLAIAFGLIKGRPGHPIRVMKNLRTCDDCHAFSKFVSSLTSTEIIMRDKNRFHHFRNGVCSCKE--FW 584
BLAST of CF832338 vs. ExPASy Swiss-Prot
Match: PP378_ARATH (Pentatricopeptide repeat-containing protein At5g13270, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H90 PE=2 SV=1) HSP 1 Score: 83.9593 bits (206), Expect = 1.167e-15 Identity = 47/105 (44.76%), Postives = 60/105 (57.14%), Query Frame = -2 Query: 516 YEKMKAV-GFAGSEYVSMDKSEASKAEIFCGHSEMLAVAFGLINT---APGMPIWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHFKDGTCSCGDEGYW 818 YEK+K GF + + +E + E HSE LA+AFGLI+ AP PI V KNL CP CH K +S + +I +RD+ FHHFK+G CSC D YW Sbjct: 653 YEKLKEFDGFMEGDMFQCNMTE--RREQLLDHSERLAIAFGLISVHGNAPA-PIKVFKNLRACPDCHEFAKHVSLVTGHEIVIRDSRRFHHFKEGKCSCND--YW 752 The following BLAST results are available for this feature:
BLAST of CF832338 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 83
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Sequences
The
following sequences are available for this feature:
EST sequence >CF832338 ID=CF832338; Name=CF832338; organism=Citrus sinensis; type=EST; length=834bpback to top |