CF832338

Overview
NameCF832338
Unique NameCF832338
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length834
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832338 vs. ExPASy Swiss-Prot
Match: PP249_ARATH (Pentatricopeptide repeat-containing protein At3g22690 OS=Arabidopsis thaliana GN=PCMP-H56 PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.167e-15
Identity = 39/87 (44.83%), Postives = 52/87 (59.77%), Query Frame = -2
Query:  516 VSMDKSEASKAEIFCGHSEMLAVAFGLINTAPGMPIWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHFKDGTCSCGDEGYW 776
            V MD  E  K  +   HSE LA+A+GLI++  G  I + KNL  C  CH+  KF SK+  R+I +RD   FH+ + G CSCGD  +W
Sbjct:  758 VLMDVDEKEKIFMLSRHSEKLAMAYGLISSNKGTTIRIVKNLRVCSDCHSFAKFASKVYNREIILRDNNRFHYIRQGKCSCGD--FW 842          
BLAST of CF832338 vs. ExPASy Swiss-Prot
Match: PP373_ARATH (Putative pentatricopeptide repeat-containing protein At5g09950 OS=Arabidopsis thaliana GN=PCMP-H35 PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.525e-15
Identity = 45/107 (42.06%), Postives = 60/107 (56.07%), Query Frame = -2
Query:  516 LEGFYEKMKAVGFAGSE-YVSMDKSEASKAEIFCGHSEMLAVAFGLI-NTAPGMPIWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHFKDGTCSCGDEGYW 830
            L+    KM+  G+     +   D  + +K EI   HSE LAVAF L    +  +PI + KNL  C  CH+  K+ISKI  R I +RD+  FHHF+DG CSC D  +W
Sbjct:  891 LKELNRKMRDAGYVPQTGFALYDLEQENKEEILSYHSEKLAVAFVLAAQRSSTLPIRIMKNLRVCGDCHSAFKYISKIEGRQIILRDSNRFHHFQDGACSCSD--FW 995          
BLAST of CF832338 vs. ExPASy Swiss-Prot
Match: PPR68_ARATH (Pentatricopeptide repeat-containing protein At1g31920 OS=Arabidopsis thaliana GN=PCMP-H11 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.991e-15
Identity = 41/87 (47.13%), Postives = 51/87 (58.62%), Query Frame = -2
Query:  516 VSMDKSEASKAEIFCGHSEMLAVAFGLINTAPGMPIWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHFKDGTCSCGDEGYW 776
            + ++  E  K E   GHS+ +A+AFGL+ T PG  I + +NL  C  CH   K IS I  R+I VRD   FH FK GTCSC D  YW
Sbjct:  522 ILLNVDEEEKKERLKGHSQKVAIAFGLLYTPPGSIIKIARNLRMCSDCHTYTKKISMIYEREIVVRDRNRFHLFKGGTCSCKD--YW 606          
BLAST of CF832338 vs. ExPASy Swiss-Prot
Match: PP170_ARATH (Pentatricopeptide repeat-containing protein At2g25580 OS=Arabidopsis thaliana GN=PCMP-H75 PE=2 SV=2)

HSP 1 Score: 83.1889 bits (204), Expect = 1.991e-15
Identity = 40/99 (40.40%), Postives = 57/99 (57.58%), Query Frame = -2
Query:  516 MKAVGFAGSEYVSM-DKSEASKAEIFCGHSEMLAVAFGLINTAPGMPIWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHFKDGTCSCGDEGYW 809
            M  VG+     +++ D  + SK  +  GHSE +A A  ++N+AP  P  V KNL  C  CHN +K +S IV R++  RD + FH  K+G C+C D  YW
Sbjct:  519 MVEVGYVAETRMALHDIDQESKETLLLGHSERIAFARAVLNSAPRKPFTVIKNLRVCVDCHNALKIMSDIVGREVITRDIKRFHQMKNGACTCKD--YW 615          
BLAST of CF832338 vs. ExPASy Swiss-Prot
Match: PP307_ARATH (Pentatricopeptide repeat-containing protein At4g13650 OS=Arabidopsis thaliana GN=PCMP-H42 PE=2 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 3.397e-15
Identity = 37/71 (52.11%), Postives = 47/71 (66.20%), Query Frame = -2
Query:  516 HSEMLAVAFGLINTAPGMPIWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHFKDGTCSCGDEGYW 728
            HSE LA++FGL++    +PI V KNL  C  CH  +KF+SK+  R+I VRD   FHHF+ G CSC D  YW
Sbjct:  996 HSEKLAISFGLLSLPATVPINVMKNLRVCNDCHAWIKFVSKVSNREIIVRDAYRFHHFEGGACSCKD--YW 1064          
BLAST of CF832338 vs. ExPASy Swiss-Prot
Match: PP271_ARATH (Putative pentatricopeptide repeat-containing protein At3g49140 OS=Arabidopsis thaliana GN=PCMP-H77 PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 5.794e-15
Identity = 47/111 (42.34%), Postives = 58/111 (52.25%), Query Frame = -2
Query:  516 LEGFYEKMKAVGFA-GSEYVSMDKSEASKAEIFCGHSEMLAVAFGLINTAP-----GMPIWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHFKDGTCSCGDEGYW 830
            L+   +KMK +G+   SE    D  E  K      HSE LA+ F L+NT          I +TKNL  C  CH   K IS+I  R+I +RDT  FH F+ G CSCGD  YW
Sbjct:  578 LDVLVKKMKELGYVPDSESALHDVEEEDKETHLAVHSEKLAIVFALMNTKEEEEDSNNTIRITKNLRICGDCHVAAKLISQITSREIIIRDTNRFHVFRFGVCSCGD--YW 686          
BLAST of CF832338 vs. ExPASy Swiss-Prot
Match: PP313_ARATH (Pentatricopeptide repeat-containing protein At4g15720 OS=Arabidopsis thaliana GN=PCMP-H1 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 7.567e-15
Identity = 45/112 (40.18%), Postives = 61/112 (54.46%), Query Frame = -2
Query:  516 LEGFYEKMKAVGFAGSEY-------VSMDKSEASKAEIFCGHSEMLAVAFGLINTAPGMPIWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHFKDGTCSCGDEGYW 830
            L+   ++MK  G  GS         V +D  E +K E+   H E LA+A+GL++   G  I +  NL  C  CH   K IS+IV R+I VRD   FH FK+G+C+C D  YW
Sbjct:  507 LKDLEKRMKERGHRGSSSMITTSSSVFVDVDEEAKDEMVSLHCERLALAYGLLHLPAGSTIRIMNNLRMCRDCHEAFKLISEIVEREIVVRDVNRFHCFKNGSCTCRD--YW 616          
BLAST of CF832338 vs. ExPASy Swiss-Prot
Match: PP198_ARATH (Pentatricopeptide repeat-containing protein At2g41080 OS=Arabidopsis thaliana GN=PCMP-H29 PE=2 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 7.567e-15
Identity = 45/100 (45.00%), Postives = 54/100 (54.00%), Query Frame = -2
Query:  516 KMKAVGFA-GSEYVSMDKSEASKAEIFCGHSEMLAVAFGLINTAPGMPIWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHFKDGTCSCGDEGYW 812
            +MK  G+   +  V  D  E  K      HSE LAVAF L+    G PI + KNL  C  CH   K+IS I  R+I +RD   FHHF +G CSCGD  YW
Sbjct:  553 EMKLKGYKPDTASVLHDMDEEEKESDLVQHSEKLAVAFALMILPEGAPIRIIKNLRVCSDCHVAFKYISVIKNREITLRDGSRFHHFINGKCSCGD--YW 650          
BLAST of CF832338 vs. ExPASy Swiss-Prot
Match: PP182_ARATH (Pentatricopeptide repeat-containing protein At2g33760 OS=Arabidopsis thaliana GN=PCMP-H6 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 7.567e-15
Identity = 47/106 (44.34%), Postives = 59/106 (55.66%), Query Frame = -2
Query:  516 LEGFYEKMKAVGFAG-SEYVSMDKSEASKAEIFCGHSEMLAVAFGLINTAPGMPIWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHFKDGTCSCGDEGYW 830
            LE    + K +G+A  SE V     E  K      HSE LAVAFGL+ T   + I + KNL  C  CH+  K+IS +  R I VRD   FHHF++G+CSC D  YW
Sbjct:  481 LETLISRCKEIGYAPVSEEVMHQVEEEEKEFALRYHSEKLAVAFGLLKTVD-VAITIVKNLRICEDCHSAFKYISIVSNRQITVRDKLRFHHFQNGSCSCLD--YW 583          
BLAST of CF832338 vs. ExPASy Swiss-Prot
Match: PP175_ARATH (Pentatricopeptide repeat-containing protein At2g29760, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H33 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 7.567e-15
Identity = 42/102 (41.18%), Postives = 60/102 (58.82%), Query Frame = -2
Query:  516 EKMKAVGFAG--SEYVSMDKSEASKAEIFCGHSEMLAVAFGLINTAPGMPIWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHFKDGTCSCGDEGYW 815
            EK+K+ G+    S+ + + + E  K +    HSE LA+ +GLI+T     I V KNL  C  CH+  K IS++  R+I VRD   FHHF++G CSC D  +W
Sbjct:  639 EKLKSNGYEPEISQVLQIIEEEEMKEQSLNLHSEKLAICYGLISTEAPKVIRVIKNLRVCGDCHSVAKLISQLYDREIIVRDRYRFHHFRNGQCSCND--FW 738          
The following BLAST results are available for this feature:
BLAST of CF832338 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
PP249_ARATH1.167e-1544.83Pentatricopeptide repeat-containing protein At3g22... [more]
PP373_ARATH1.525e-1542.06Putative pentatricopeptide repeat-containing prote... [more]
PPR68_ARATH1.991e-1547.13Pentatricopeptide repeat-containing protein At1g31... [more]
PP170_ARATH1.991e-1540.40Pentatricopeptide repeat-containing protein At2g25... [more]
PP307_ARATH3.397e-1552.11Pentatricopeptide repeat-containing protein At4g13... [more]
PP271_ARATH5.794e-1542.34Putative pentatricopeptide repeat-containing prote... [more]
PP313_ARATH7.567e-1540.18Pentatricopeptide repeat-containing protein At4g15... [more]
PP198_ARATH7.567e-1545.00Pentatricopeptide repeat-containing protein At2g41... [more]
PP182_ARATH7.567e-1544.34Pentatricopeptide repeat-containing protein At2g33... [more]
PP175_ARATH7.567e-1541.18Pentatricopeptide repeat-containing protein At2g29... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01L08_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01L08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832338 ID=CF832338; Name=CF832338; organism=Citrus sinensis; type=EST; length=834bp
TTTTTTTTTTTTTTTTTGAAATCAATCTACACAATTTTCATTTCACCTTT
AAGGTAAATTCTACTATATTTCACATGAAATATACATAAATAAAAAGAAT
AGCACTTTACCTACCTCGCACAACAATCTTGTTTAAATTATATTTTCCCT
TTTGGCAGCAAGAATACAGTGACGCTATATCCATTGGGTGCATACATAAA
AGTACTACACGATACCTTGATGTCAGTTCCATAATCAAAGGGTGTGCAGT
AAATTGAACAGCAAACCAGCTTCTTTCCTTTTCAAGACTGCTGGTTAAAG
CGAGCTGAATAACTGTTCATCAGTGTTTCAAGCTCTTGGAGTTGGGACTA
CGATGTTCTCTGCTTTGCCTGGAATCCTACAATTTAGTTCAAGGGGCCAG
CCACTGCCCAAGTGTACAAGTTTCACCACAACCCTGAAACTCTCATCCTG
TATTTTTGTACAAGTTATAGAATGCTTAAAAAAAATCTTTAGCTCTCTGA
CCTGTCTAGTCTTCCCCAGTAACCCTCATCACCACAAGAGCAGGTTCCAT
CCTTGAAGTGGTGAAAATGTTCAGTATCCCTAACAAAAATGTCTCTGCGT
ACAATCTTGGAGATGAACTTGACAGTGTTGTGACAACTTGGGCATGTATA
GAGATTCTTTGTAACCCAAATAGGCATCCCCGGGGCAGTATTTATGAGGC
CAAATGCCACAGCCAACATCTCACTGTGACCACAAAAGATCTCAGCTTTT
GAAGCTTCACTTTTGTCCATGGACACATATTCTGAACCAGCAAAACCAAC
TGCTTTCATTTTCTCATAAAATCCCTCCAAAACT
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