CF832338
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF832338 vs. ExPASy Swiss-Prot
Match: PP249_ARATH (Pentatricopeptide repeat-containing protein At3g22690 OS=Arabidopsis thaliana GN=PCMP-H56 PE=2 SV=1) HSP 1 Score: 83.9593 bits (206), Expect = 1.167e-15 Identity = 39/87 (44.83%), Postives = 52/87 (59.77%), Query Frame = -2 Query: 516 VSMDKSEASKAEIFCGHSEMLAVAFGLINTAPGMPIWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHFKDGTCSCGDEGYW 776 V MD E K + HSE LA+A+GLI++ G I + KNL C CH+ KF SK+ R+I +RD FH+ + G CSCGD +W Sbjct: 758 VLMDVDEKEKIFMLSRHSEKLAMAYGLISSNKGTTIRIVKNLRVCSDCHSFAKFASKVYNREIILRDNNRFHYIRQGKCSCGD--FW 842
BLAST of CF832338 vs. ExPASy Swiss-Prot
Match: PP373_ARATH (Putative pentatricopeptide repeat-containing protein At5g09950 OS=Arabidopsis thaliana GN=PCMP-H35 PE=3 SV=1) HSP 1 Score: 83.5741 bits (205), Expect = 1.525e-15 Identity = 45/107 (42.06%), Postives = 60/107 (56.07%), Query Frame = -2 Query: 516 LEGFYEKMKAVGFAGSE-YVSMDKSEASKAEIFCGHSEMLAVAFGLI-NTAPGMPIWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHFKDGTCSCGDEGYW 830 L+ KM+ G+ + D + +K EI HSE LAVAF L + +PI + KNL C CH+ K+ISKI R I +RD+ FHHF+DG CSC D +W Sbjct: 891 LKELNRKMRDAGYVPQTGFALYDLEQENKEEILSYHSEKLAVAFVLAAQRSSTLPIRIMKNLRVCGDCHSAFKYISKIEGRQIILRDSNRFHHFQDGACSCSD--FW 995
BLAST of CF832338 vs. ExPASy Swiss-Prot
Match: PPR68_ARATH (Pentatricopeptide repeat-containing protein At1g31920 OS=Arabidopsis thaliana GN=PCMP-H11 PE=2 SV=1) HSP 1 Score: 83.1889 bits (204), Expect = 1.991e-15 Identity = 41/87 (47.13%), Postives = 51/87 (58.62%), Query Frame = -2 Query: 516 VSMDKSEASKAEIFCGHSEMLAVAFGLINTAPGMPIWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHFKDGTCSCGDEGYW 776 + ++ E K E GHS+ +A+AFGL+ T PG I + +NL C CH K IS I R+I VRD FH FK GTCSC D YW Sbjct: 522 ILLNVDEEEKKERLKGHSQKVAIAFGLLYTPPGSIIKIARNLRMCSDCHTYTKKISMIYEREIVVRDRNRFHLFKGGTCSCKD--YW 606
BLAST of CF832338 vs. ExPASy Swiss-Prot
Match: PP170_ARATH (Pentatricopeptide repeat-containing protein At2g25580 OS=Arabidopsis thaliana GN=PCMP-H75 PE=2 SV=2) HSP 1 Score: 83.1889 bits (204), Expect = 1.991e-15 Identity = 40/99 (40.40%), Postives = 57/99 (57.58%), Query Frame = -2 Query: 516 MKAVGFAGSEYVSM-DKSEASKAEIFCGHSEMLAVAFGLINTAPGMPIWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHFKDGTCSCGDEGYW 809 M VG+ +++ D + SK + GHSE +A A ++N+AP P V KNL C CHN +K +S IV R++ RD + FH K+G C+C D YW Sbjct: 519 MVEVGYVAETRMALHDIDQESKETLLLGHSERIAFARAVLNSAPRKPFTVIKNLRVCVDCHNALKIMSDIVGREVITRDIKRFHQMKNGACTCKD--YW 615
BLAST of CF832338 vs. ExPASy Swiss-Prot
Match: PP307_ARATH (Pentatricopeptide repeat-containing protein At4g13650 OS=Arabidopsis thaliana GN=PCMP-H42 PE=2 SV=2) HSP 1 Score: 82.4185 bits (202), Expect = 3.397e-15 Identity = 37/71 (52.11%), Postives = 47/71 (66.20%), Query Frame = -2 Query: 516 HSEMLAVAFGLINTAPGMPIWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHFKDGTCSCGDEGYW 728 HSE LA++FGL++ +PI V KNL C CH +KF+SK+ R+I VRD FHHF+ G CSC D YW Sbjct: 996 HSEKLAISFGLLSLPATVPINVMKNLRVCNDCHAWIKFVSKVSNREIIVRDAYRFHHFEGGACSCKD--YW 1064
BLAST of CF832338 vs. ExPASy Swiss-Prot
Match: PP271_ARATH (Putative pentatricopeptide repeat-containing protein At3g49140 OS=Arabidopsis thaliana GN=PCMP-H77 PE=3 SV=1) HSP 1 Score: 81.6481 bits (200), Expect = 5.794e-15 Identity = 47/111 (42.34%), Postives = 58/111 (52.25%), Query Frame = -2 Query: 516 LEGFYEKMKAVGFA-GSEYVSMDKSEASKAEIFCGHSEMLAVAFGLINTAP-----GMPIWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHFKDGTCSCGDEGYW 830 L+ +KMK +G+ SE D E K HSE LA+ F L+NT I +TKNL C CH K IS+I R+I +RDT FH F+ G CSCGD YW Sbjct: 578 LDVLVKKMKELGYVPDSESALHDVEEEDKETHLAVHSEKLAIVFALMNTKEEEEDSNNTIRITKNLRICGDCHVAAKLISQITSREIIIRDTNRFHVFRFGVCSCGD--YW 686
BLAST of CF832338 vs. ExPASy Swiss-Prot
Match: PP313_ARATH (Pentatricopeptide repeat-containing protein At4g15720 OS=Arabidopsis thaliana GN=PCMP-H1 PE=2 SV=1) HSP 1 Score: 81.2629 bits (199), Expect = 7.567e-15 Identity = 45/112 (40.18%), Postives = 61/112 (54.46%), Query Frame = -2 Query: 516 LEGFYEKMKAVGFAGSEY-------VSMDKSEASKAEIFCGHSEMLAVAFGLINTAPGMPIWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHFKDGTCSCGDEGYW 830 L+ ++MK G GS V +D E +K E+ H E LA+A+GL++ G I + NL C CH K IS+IV R+I VRD FH FK+G+C+C D YW Sbjct: 507 LKDLEKRMKERGHRGSSSMITTSSSVFVDVDEEAKDEMVSLHCERLALAYGLLHLPAGSTIRIMNNLRMCRDCHEAFKLISEIVEREIVVRDVNRFHCFKNGSCTCRD--YW 616
BLAST of CF832338 vs. ExPASy Swiss-Prot
Match: PP198_ARATH (Pentatricopeptide repeat-containing protein At2g41080 OS=Arabidopsis thaliana GN=PCMP-H29 PE=2 SV=2) HSP 1 Score: 81.2629 bits (199), Expect = 7.567e-15 Identity = 45/100 (45.00%), Postives = 54/100 (54.00%), Query Frame = -2 Query: 516 KMKAVGFA-GSEYVSMDKSEASKAEIFCGHSEMLAVAFGLINTAPGMPIWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHFKDGTCSCGDEGYW 812 +MK G+ + V D E K HSE LAVAF L+ G PI + KNL C CH K+IS I R+I +RD FHHF +G CSCGD YW Sbjct: 553 EMKLKGYKPDTASVLHDMDEEEKESDLVQHSEKLAVAFALMILPEGAPIRIIKNLRVCSDCHVAFKYISVIKNREITLRDGSRFHHFINGKCSCGD--YW 650
BLAST of CF832338 vs. ExPASy Swiss-Prot
Match: PP182_ARATH (Pentatricopeptide repeat-containing protein At2g33760 OS=Arabidopsis thaliana GN=PCMP-H6 PE=2 SV=1) HSP 1 Score: 81.2629 bits (199), Expect = 7.567e-15 Identity = 47/106 (44.34%), Postives = 59/106 (55.66%), Query Frame = -2 Query: 516 LEGFYEKMKAVGFAG-SEYVSMDKSEASKAEIFCGHSEMLAVAFGLINTAPGMPIWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHFKDGTCSCGDEGYW 830 LE + K +G+A SE V E K HSE LAVAFGL+ T + I + KNL C CH+ K+IS + R I VRD FHHF++G+CSC D YW Sbjct: 481 LETLISRCKEIGYAPVSEEVMHQVEEEEKEFALRYHSEKLAVAFGLLKTVD-VAITIVKNLRICEDCHSAFKYISIVSNRQITVRDKLRFHHFQNGSCSCLD--YW 583
BLAST of CF832338 vs. ExPASy Swiss-Prot
Match: PP175_ARATH (Pentatricopeptide repeat-containing protein At2g29760, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H33 PE=2 SV=1) HSP 1 Score: 81.2629 bits (199), Expect = 7.567e-15 Identity = 42/102 (41.18%), Postives = 60/102 (58.82%), Query Frame = -2 Query: 516 EKMKAVGFAG--SEYVSMDKSEASKAEIFCGHSEMLAVAFGLINTAPGMPIWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHFKDGTCSCGDEGYW 815 EK+K+ G+ S+ + + + E K + HSE LA+ +GLI+T I V KNL C CH+ K IS++ R+I VRD FHHF++G CSC D +W Sbjct: 639 EKLKSNGYEPEISQVLQIIEEEEMKEQSLNLHSEKLAICYGLISTEAPKVIRVIKNLRVCGDCHSVAKLISQLYDREIIVRDRYRFHHFRNGQCSCND--FW 738 The following BLAST results are available for this feature:
BLAST of CF832338 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 83
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Sequences
The
following sequences are available for this feature:
EST sequence >CF832338 ID=CF832338; Name=CF832338; organism=Citrus sinensis; type=EST; length=834bpback to top |